Open science resources for the discovery and analysis of Tara Oceans data. Pesant, S., Not, F., Picheral, M., Kandels-Lewis, S., Le Bescot, N., Gorsky, G., Iudicone, D., Karsenti, E., Speich, S., Troublé, R., Dimier, C., Searson, S., Acinas, S., G., Bork, P., Boss, E., Bowler, C., De Vargas, C., Follows, M., Grimsley, N., Hingamp, P., Jaillon, O., Karp-Boss, L., Krzic, U., Ogata, H., Raes, J., Reynaud, E., G., Sardet, C., Sieracki, M., Stemmann, L., Sullivan, M., B., Sunagawa, S., Velayoudon, D., Weissenbach, J., & Wincker, P. Scientific Data, 2:150023, Nature Publishing Group, 5, 2015. abstract bibtex The Tara Oceans expedition (2009–2013) sampled contrasting ecosystems of the world oceans, collecting environmental data and plankton, from viruses to metazoans, for later analysis using modern sequencing and state-of-the-art imaging technologies. It surveyed 210 ecosystems in 20 biogeographic provinces, collecting over 35,000 samples of seawater and plankton. The interpretation of such an extensive collection of samples in their ecological context requires means to explore, assess and access raw and validated data sets. To address this challenge, the Tara Oceans Consortium offers open science resources, including the use of open access archives for nucleotides (ENA) and for environmental, biogeochemical, taxonomic and morphological data (PANGAEA), and the development of on line discovery tools and collaborative annotation tools for sequences and images. Here, we present an overview of Tara Oceans Data, and we provide detailed registries (data sets) of all campaigns (from port-to-port), stations and sampling events.
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title = {Open science resources for the discovery and analysis of Tara Oceans data},
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year = {2015},
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abstract = {The Tara Oceans expedition (2009–2013) sampled contrasting ecosystems of the world oceans, collecting environmental data and plankton, from viruses to metazoans, for later analysis using modern sequencing and state-of-the-art imaging technologies. It surveyed 210 ecosystems in 20 biogeographic provinces, collecting over 35,000 samples of seawater and plankton. The interpretation of such an extensive collection of samples in their ecological context requires means to explore, assess and access raw and validated data sets. To address this challenge, the Tara Oceans Consortium offers open science resources, including the use of open access archives for nucleotides (ENA) and for environmental, biogeochemical, taxonomic and morphological data (PANGAEA), and the development of on line discovery tools and collaborative annotation tools for sequences and images. Here, we present an overview of Tara Oceans Data, and we provide detailed registries (data sets) of all campaigns (from port-to-port), stations and sampling events.},
bibtype = {article},
author = {Pesant, Stéphane and Not, Fabrice and Picheral, Marc and Kandels-Lewis, Stefanie and Le Bescot, Noan and Gorsky, Gabriel and Iudicone, Daniele and Karsenti, Eric and Speich, Sabrina and Troublé, Romain and Dimier, Céline and Searson, Sarah and Acinas, Silvia G. and Bork, Peer and Boss, Emmanuel and Bowler, Chris and De Vargas, Colomban and Follows, Michael and Grimsley, Nigel and Hingamp, Pascal and Jaillon, Olivier and Karp-Boss, Lee and Krzic, Uros and Ogata, Hiroyuki and Raes, Jeroen and Reynaud, Emmanuel G. and Sardet, Christian and Sieracki, Mike and Stemmann, Lars and Sullivan, Matthew B. and Sunagawa, Shinichi and Velayoudon, Didier and Weissenbach, Jean and Wincker, Patrick},
journal = {Scientific Data}
}
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