MotifOrganizer: a scalable model-based motif clustering tool for mammalian genomes. Qin, Z. S, Bilenky, M., Su, G., & Jones, S. Front Biosci, 5:785–797, 2013.
bibtex   
@article{qin2013motiforganizer,
  title={MotifOrganizer: a scalable model-based motif clustering tool for mammalian genomes},
  author={Qin, Zhaohui S and Bilenky, Misha and Su, Gang and Jones, SJ},
  journal={Front Biosci},
  volume={5},
  pages={785--797},
  year={2013}
}

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