@article{ranade_lignin_2024,
	title = {Lignin biosynthesis pathway repressors in gymnosperms: differential repressor domains as compared to angiosperms},
	volume = {4},
	copyright = {2024 The Author(s)},
	issn = {2767-3812},
	shorttitle = {Lignin biosynthesis pathway repressors in gymnosperms},
	url = {https://www.maxapress.com/article/doi/10.48130/forres-0024-0029},
	doi = {10.48130/forres-0024-0029},
	abstract = {{\textless}p{\textgreater}Lignin is a polyphenolic polymer present in the cell walls of specialized plant cell types in vascular plants that provides structural support and plays a major role in plant protection. The lignin biosynthesis pathway is regulated by transcription factors from the MYB (myeloblastosis) family. While several MYB members positively regulate lignin synthesis, only a few negatively regulate lignin synthesis. These lignin suppressors are well characterized in model plant species; however, their role has not been fully explored in gymnosperms. Lignin forms one of the major hurdles for the forest-based industry e.g. paper, pulp, and biofuel production. Therefore, the detailed mechanisms involved in the regulation of lignin synthesis are valuable, especially in conifers that form the major source of softwood for timber and paper production. In this review, the potential and differential domains present in the MYB suppressors in gymnosperms are discussed, along with their phylogenetic analysis. Sequence analysis revealed that the N-terminal regions of the MYB suppressor members were found to be conserved among the gymnosperms and angiosperms containing the R2, R3, and bHLH domains, while the C-terminal regions were found to be highly variable. The typical repressor motifs like the LxLxL-type EAR motif and the TLLLFR motif were absent from the C-terminal regions of MYB suppressors from most gymnosperms. However, although the gymnosperms lacked the characteristic repressor domains, a R2R3-type MYB member from \textit{Ginkgo} was reported to repress the lignin biosynthetic pathway. It is proposed that gymnosperms possess unique kinds of repressors that need further functional validation.{\textless}/p{\textgreater}},
	language = {en},
	number = {1},
	urldate = {2024-09-27},
	journal = {Forestry Research},
	author = {Ranade, Sonali Sachin and García-Gil, María Rosario and Ranade, Sonali Sachin and García-Gil, María Rosario},
	month = sep,
	year = {2024},
	note = {Bandiera\_abtest: a
Cc\_license\_type: cc\_by
Cg\_type: Maximum Academic Press
Number: forres-0024-0029
Primary\_atype: Forestry Research
Publisher: Maximum Academic Press
Subject\_term: MINI REVIEW
Subject\_term\_id: MINI REVIEW},
}

{"_id":"bM4XZHMXNgmui69S7","bibbaseid":"ranade-garcagil-ranade-garcagil-ligninbiosynthesispathwayrepressorsingymnospermsdifferentialrepressordomainsascomparedtoangiosperms-2024","author_short":["Ranade, S. S.","García-Gil, M. R.","Ranade, S. S.","García-Gil, M. R."],"bibdata":{"bibtype":"article","type":"article","title":"Lignin biosynthesis pathway repressors in gymnosperms: differential repressor domains as compared to angiosperms","volume":"4","copyright":"2024 The Author(s)","issn":"2767-3812","shorttitle":"Lignin biosynthesis pathway repressors in gymnosperms","url":"https://www.maxapress.com/article/doi/10.48130/forres-0024-0029","doi":"10.48130/forres-0024-0029","abstract":"\\textlessp\\textgreaterLignin is a polyphenolic polymer present in the cell walls of specialized plant cell types in vascular plants that provides structural support and plays a major role in plant protection. The lignin biosynthesis pathway is regulated by transcription factors from the MYB (myeloblastosis) family. While several MYB members positively regulate lignin synthesis, only a few negatively regulate lignin synthesis. These lignin suppressors are well characterized in model plant species; however, their role has not been fully explored in gymnosperms. Lignin forms one of the major hurdles for the forest-based industry e.g. paper, pulp, and biofuel production. Therefore, the detailed mechanisms involved in the regulation of lignin synthesis are valuable, especially in conifers that form the major source of softwood for timber and paper production. In this review, the potential and differential domains present in the MYB suppressors in gymnosperms are discussed, along with their phylogenetic analysis. Sequence analysis revealed that the N-terminal regions of the MYB suppressor members were found to be conserved among the gymnosperms and angiosperms containing the R2, R3, and bHLH domains, while the C-terminal regions were found to be highly variable. The typical repressor motifs like the LxLxL-type EAR motif and the TLLLFR motif were absent from the C-terminal regions of MYB suppressors from most gymnosperms. However, although the gymnosperms lacked the characteristic repressor domains, a R2R3-type MYB member from <i>Ginkgo</i> was reported to repress the lignin biosynthetic pathway. It is proposed that gymnosperms possess unique kinds of repressors that need further functional validation.\\textless/p\\textgreater","language":"en","number":"1","urldate":"2024-09-27","journal":"Forestry Research","author":[{"propositions":[],"lastnames":["Ranade"],"firstnames":["Sonali","Sachin"],"suffixes":[]},{"propositions":[],"lastnames":["García-Gil"],"firstnames":["María","Rosario"],"suffixes":[]},{"propositions":[],"lastnames":["Ranade"],"firstnames":["Sonali","Sachin"],"suffixes":[]},{"propositions":[],"lastnames":["García-Gil"],"firstnames":["María","Rosario"],"suffixes":[]}],"month":"September","year":"2024","note":"Bandiera_abtest: a Cc_license_type: cc_by Cg_type: Maximum Academic Press Number: forres-0024-0029 Primary_atype: Forestry Research Publisher: Maximum Academic Press Subject_term: MINI REVIEW Subject_term_id: MINI REVIEW","bibtex":"@article{ranade_lignin_2024,\n\ttitle = {Lignin biosynthesis pathway repressors in gymnosperms: differential repressor domains as compared to angiosperms},\n\tvolume = {4},\n\tcopyright = {2024 The Author(s)},\n\tissn = {2767-3812},\n\tshorttitle = {Lignin biosynthesis pathway repressors in gymnosperms},\n\turl = {https://www.maxapress.com/article/doi/10.48130/forres-0024-0029},\n\tdoi = {10.48130/forres-0024-0029},\n\tabstract = {{\\textless}p{\\textgreater}Lignin is a polyphenolic polymer present in the cell walls of specialized plant cell types in vascular plants that provides structural support and plays a major role in plant protection. The lignin biosynthesis pathway is regulated by transcription factors from the MYB (myeloblastosis) family. While several MYB members positively regulate lignin synthesis, only a few negatively regulate lignin synthesis. These lignin suppressors are well characterized in model plant species; however, their role has not been fully explored in gymnosperms. Lignin forms one of the major hurdles for the forest-based industry e.g. paper, pulp, and biofuel production. Therefore, the detailed mechanisms involved in the regulation of lignin synthesis are valuable, especially in conifers that form the major source of softwood for timber and paper production. In this review, the potential and differential domains present in the MYB suppressors in gymnosperms are discussed, along with their phylogenetic analysis. Sequence analysis revealed that the N-terminal regions of the MYB suppressor members were found to be conserved among the gymnosperms and angiosperms containing the R2, R3, and bHLH domains, while the C-terminal regions were found to be highly variable. The typical repressor motifs like the LxLxL-type EAR motif and the TLLLFR motif were absent from the C-terminal regions of MYB suppressors from most gymnosperms. However, although the gymnosperms lacked the characteristic repressor domains, a R2R3-type MYB member from \\textit{Ginkgo} was reported to repress the lignin biosynthetic pathway. It is proposed that gymnosperms possess unique kinds of repressors that need further functional validation.{\\textless}/p{\\textgreater}},\n\tlanguage = {en},\n\tnumber = {1},\n\turldate = {2024-09-27},\n\tjournal = {Forestry Research},\n\tauthor = {Ranade, Sonali Sachin and García-Gil, María Rosario and Ranade, Sonali Sachin and García-Gil, María Rosario},\n\tmonth = sep,\n\tyear = {2024},\n\tnote = {Bandiera\\_abtest: a\nCc\\_license\\_type: cc\\_by\nCg\\_type: Maximum Academic Press\nNumber: forres-0024-0029\nPrimary\\_atype: Forestry Research\nPublisher: Maximum Academic Press\nSubject\\_term: MINI REVIEW\nSubject\\_term\\_id: MINI REVIEW},\n}\n\n\n\n\n\n\n\n\n\n\n\n","author_short":["Ranade, S. S.","García-Gil, M. R.","Ranade, S. S.","García-Gil, M. R."],"key":"ranade_lignin_2024","id":"ranade_lignin_2024","bibbaseid":"ranade-garcagil-ranade-garcagil-ligninbiosynthesispathwayrepressorsingymnospermsdifferentialrepressordomainsascomparedtoangiosperms-2024","role":"author","urls":{"Paper":"https://www.maxapress.com/article/doi/10.48130/forres-0024-0029"},"metadata":{"authorlinks":{}}},"bibtype":"article","biburl":"https://bibbase.org/zotero/upscpub","dataSources":["9cGcv2t8pRzC92kzs"],"keywords":[],"search_terms":["lignin","biosynthesis","pathway","repressors","gymnosperms","differential","repressor","domains","compared","angiosperms","ranade","garcía-gil","ranade","garcía-gil"],"title":"Lignin biosynthesis pathway repressors in gymnosperms: differential repressor domains as compared to angiosperms","year":2024}