Coordinates and intervals in graph-based reference genomes. Rand, K. D., Grytten, I., Nederbragt, A. J., Storvik, G. O., Glad, I. K., & Sandve, G. K. BMC Bioinformatics, 18(1):263, May, 2017.
Paper doi abstract bibtex It has been proposed that future reference genomes should be graph structures in order to better represent the sequence diversity present in a species. However, there is currently no standard method to represent genomic intervals, such as the positions of genes or transcription factor binding sites, on graph-based reference genomes.
@article{rand_coordinates_2017,
title = {Coordinates and intervals in graph-based reference genomes},
volume = {18},
issn = {1471-2105},
url = {https://doi.org/10.1186/s12859-017-1678-9},
doi = {10.1186/s12859-017-1678-9},
abstract = {It has been proposed that future reference genomes should be graph structures in order to better represent the sequence diversity present in a species. However, there is currently no standard method to represent genomic intervals, such as the positions of genes or transcription factor binding sites, on graph-based reference genomes.},
number = {1},
urldate = {2022-06-15},
journal = {BMC Bioinformatics},
author = {Rand, Knut D. and Grytten, Ivar and Nederbragt, Alexander J. and Storvik, Geir O. and Glad, Ingrid K. and Sandve, Geir K.},
month = may,
year = {2017},
keywords = {coordinate, pangenome, pangenome graph},
pages = {263},
}