Coordinates and intervals in graph-based reference genomes. Rand, K. D., Grytten, I., Nederbragt, A. J., Storvik, G. O., Glad, I. K., & Sandve, G. K. BMC Bioinformatics, 18(1):263, May, 2017.
Coordinates and intervals in graph-based reference genomes [link]Paper  doi  abstract   bibtex   
It has been proposed that future reference genomes should be graph structures in order to better represent the sequence diversity present in a species. However, there is currently no standard method to represent genomic intervals, such as the positions of genes or transcription factor binding sites, on graph-based reference genomes.
@article{rand_coordinates_2017,
	title = {Coordinates and intervals in graph-based reference genomes},
	volume = {18},
	issn = {1471-2105},
	url = {https://doi.org/10.1186/s12859-017-1678-9},
	doi = {10.1186/s12859-017-1678-9},
	abstract = {It has been proposed that future reference genomes should be graph structures in order to better represent the sequence diversity present in a species. However, there is currently no standard method to represent genomic intervals, such as the positions of genes or transcription factor binding sites, on graph-based reference genomes.},
	number = {1},
	urldate = {2022-06-15},
	journal = {BMC Bioinformatics},
	author = {Rand, Knut D. and Grytten, Ivar and Nederbragt, Alexander J. and Storvik, Geir O. and Glad, Ingrid K. and Sandve, Geir K.},
	month = may,
	year = {2017},
	keywords = {coordinate, pangenome, pangenome graph},
	pages = {263},
}

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