Beyond Mfold: Recent advances in RNA bioinformatics. Reeder, J.; Höchsmann, M.; Rehmsmeier, M.; Voß, B.; and Giegerich, R. Journal of Biotechnology, 124(1):41–55, June, 2006. 00057
Beyond Mfold: Recent advances in RNA bioinformatics [link]Paper  doi  abstract   bibtex   
Computational analysis of RNA secondary structure is a classical field of biosequence analysis, which has recently gained momentum due to the manyfold regulatory functions of RNA that have become apparent. We present five recent computational approaches that address the problems of synoptic folding space analysis, pseudoknot prediction, structure alignment, comparative structure prediction, and miRNA target prediction. All these programs are in current use and are available via the Bielefeld Bioinformatics Server at http://bibiserv.techfak.uni-bielefeld.de.
@article{reeder_beyond_2006,
	title = {Beyond {Mfold}: {Recent} advances in {RNA} bioinformatics},
	volume = {124},
	issn = {0168-1656},
	shorttitle = {Beyond {Mfold}},
	url = {http://www.sciencedirect.com/science/article/B6T3C-4JFHDS5-1/2/cdc38facf439d671b17c4f84d1729468},
	doi = {10.1016/j.jbiotec.2006.01.034},
	abstract = {Computational analysis of RNA secondary structure is a classical field of biosequence analysis, which has recently gained momentum due to the manyfold regulatory functions of RNA that have become apparent. We present five recent computational approaches that address the problems of synoptic folding space analysis, pseudoknot prediction, structure alignment, comparative structure prediction, and miRNA target prediction. All these programs are in current use and are available via the Bielefeld Bioinformatics Server at http://bibiserv.techfak.uni-bielefeld.de.},
	number = {1},
	urldate = {2009-03-10},
	journal = {Journal of Biotechnology},
	author = {Reeder, Jens and Höchsmann, Matthias and Rehmsmeier, Marc and Voß, Bjoern and Giegerich, Robert},
	month = jun,
	year = {2006},
	note = {00057},
	keywords = {Consensus structure prediction, RNA interference, RNA pseudoknots, RNA secondary structure, RNA structure comparison, miRNA target prediction},
	pages = {41--55}
}
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