@article{RN293,
   author = {Rigonato, J. and Budinich, M. and Murillo, A. A. and Brandao, M. C. and Pierella Karlusich, J. J. and Soviadan, Y. D. and Gregory, A. C. and Endo, H. and Kokoszka, F. and Vik, D. and Henry, N. and Fremont, P. and Labadie, K. and Zayed, A. A. and Dimier, C. and Picheral, M. and Searson, S. and Poulain, J. and Kandels, S. and Pesant, S. and Karsenti, E. and Tara Oceans, coordinators and Bork, P. and Bowler, C. and de Vargas, C. and Eveillard, D. and Gehlen, M. and Iudicone, D. and Lombard, F. and Ogata, H. and Stemmann, L. and Sullivan, M. B. and Sunagawa, S. and Wincker, P. and Chaffron, S. and Jaillon, O.},
   title = {Ocean-wide comparisons of mesopelagic planktonic community structures},
   journal = {ISME Commun},
   volume = {3},
   number = {1},
   pages = {83},
   note = {Rigonato, Janaina
Budinich, Marko
Murillo, Alejandro A
Brandao, Manoela C
Pierella Karlusich, Juan J
Soviadan, Yawouvi Dodji
Gregory, Ann C
Endo, Hisashi
Kokoszka, Florian
Vik, Dean
Henry, Nicolas
Fremont, Paul
Labadie, Karine
Zayed, Ahmed A
Dimier, Celine
Picheral, Marc
Searson, Sarah
Poulain, Julie
Kandels, Stefanie
Pesant, Stephane
Karsenti, Eric
Bork, Peer
Bowler, Chris
de Vargas, Colomban
Eveillard, Damien
Gehlen, Marion
Iudicone, Daniele
Lombard, Fabien
Ogata, Hiroyuki
Stemmann, Lars
Sullivan, Matthew B
Sunagawa, Shinichi
Wincker, Patrick
Chaffron, Samuel
Jaillon, Olivier
eng
England
2023/08/19
ISME Commun. 2023 Aug 18;3(1):83. doi: 10.1038/s43705-023-00279-9.},
   abstract = {For decades, marine plankton have been investigated for their capacity to modulate biogeochemical cycles and provide fishery resources. Between the sunlit (epipelagic) layer and the deep dark waters, lies a vast and heterogeneous part of the ocean: the mesopelagic zone. How plankton composition is shaped by environment has been well-explored in the epipelagic but much less in the mesopelagic ocean. Here, we conducted comparative analyses of trans-kingdom community assemblages thriving in the mesopelagic oxygen minimum zone (OMZ), mesopelagic oxic, and their epipelagic counterparts. We identified nine distinct types of intermediate water masses that correlate with variation in mesopelagic community composition. Furthermore, oxygen, NO(3)(-) and particle flux together appeared as the main drivers governing these communities. Novel taxonomic signatures emerged from OMZ while a global co-occurrence network analysis showed that about 70% of the abundance of mesopelagic plankton groups is organized into three community modules. One module gathers prokaryotes, pico-eukaryotes and Nucleo-Cytoplasmic Large DNA Viruses (NCLDV) from oxic regions, and the two other modules are enriched in OMZ prokaryotes and OMZ pico-eukaryotes, respectively. We hypothesize that OMZ conditions led to a diversification of ecological niches, and thus communities, due to selective pressure from limited resources. Our study further clarifies the interplay between environmental factors in the mesopelagic oxic and OMZ, and the compositional features of communities.},
   ISSN = {2730-6151 (Electronic)
2730-6151 (Print)
2730-6151 (Linking)},
   DOI = {10.1038/s43705-023-00279-9},
   url = {https://www.ncbi.nlm.nih.gov/pubmed/37596349},
   year = {2023},
   type = {Journal Article}
}

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B.","Sunagawa, S.","Wincker, P.","Chaffron, S.","Jaillon, O."],"bibdata":{"bibtype":"article","type":"Journal Article","author":[{"propositions":[],"lastnames":["Rigonato"],"firstnames":["J."],"suffixes":[]},{"propositions":[],"lastnames":["Budinich"],"firstnames":["M."],"suffixes":[]},{"propositions":[],"lastnames":["Murillo"],"firstnames":["A.","A."],"suffixes":[]},{"propositions":[],"lastnames":["Brandao"],"firstnames":["M.","C."],"suffixes":[]},{"propositions":[],"lastnames":["Pierella","Karlusich"],"firstnames":["J.","J."],"suffixes":[]},{"propositions":[],"lastnames":["Soviadan"],"firstnames":["Y.","D."],"suffixes":[]},{"propositions":[],"lastnames":["Gregory"],"firstnames":["A.","C."],"suffixes":[]},{"propositions":[],"lastnames":["Endo"],"firstnames":["H."],"suffixes":[]},{"propositions":[],"lastnames":["Kokoszka"],"firstnames":["F."],"suffixes":[]},{"propositions":[],"lastnames":["Vik"],"firstnames":["D."],"suffixes":[]},{"propositions":[],"lastnames":["Henry"],"firstnames":["N."],"suffixes":[]},{"propositions":[],"lastnames":["Fremont"],"firstnames":["P."],"suffixes":[]},{"propositions":[],"lastnames":["Labadie"],"firstnames":["K."],"suffixes":[]},{"propositions":[],"lastnames":["Zayed"],"firstnames":["A.","A."],"suffixes":[]},{"propositions":[],"lastnames":["Dimier"],"firstnames":["C."],"suffixes":[]},{"propositions":[],"lastnames":["Picheral"],"firstnames":["M."],"suffixes":[]},{"propositions":[],"lastnames":["Searson"],"firstnames":["S."],"suffixes":[]},{"propositions":[],"lastnames":["Poulain"],"firstnames":["J."],"suffixes":[]},{"propositions":[],"lastnames":["Kandels"],"firstnames":["S."],"suffixes":[]},{"propositions":[],"lastnames":["Pesant"],"firstnames":["S."],"suffixes":[]},{"propositions":[],"lastnames":["Karsenti"],"firstnames":["E."],"suffixes":[]},{"propositions":[],"lastnames":["Tara","Oceans"],"firstnames":["coordinators"],"suffixes":[]},{"propositions":[],"lastnames":["Bork"],"firstnames":["P."],"suffixes":[]},{"propositions":[],"lastnames":["Bowler"],"firstnames":["C."],"suffixes":[]},{"propositions":["de"],"lastnames":["Vargas"],"firstnames":["C."],"suffixes":[]},{"propositions":[],"lastnames":["Eveillard"],"firstnames":["D."],"suffixes":[]},{"propositions":[],"lastnames":["Gehlen"],"firstnames":["M."],"suffixes":[]},{"propositions":[],"lastnames":["Iudicone"],"firstnames":["D."],"suffixes":[]},{"propositions":[],"lastnames":["Lombard"],"firstnames":["F."],"suffixes":[]},{"propositions":[],"lastnames":["Ogata"],"firstnames":["H."],"suffixes":[]},{"propositions":[],"lastnames":["Stemmann"],"firstnames":["L."],"suffixes":[]},{"propositions":[],"lastnames":["Sullivan"],"firstnames":["M.","B."],"suffixes":[]},{"propositions":[],"lastnames":["Sunagawa"],"firstnames":["S."],"suffixes":[]},{"propositions":[],"lastnames":["Wincker"],"firstnames":["P."],"suffixes":[]},{"propositions":[],"lastnames":["Chaffron"],"firstnames":["S."],"suffixes":[]},{"propositions":[],"lastnames":["Jaillon"],"firstnames":["O."],"suffixes":[]}],"title":"Ocean-wide comparisons of mesopelagic planktonic community structures","journal":"ISME Commun","volume":"3","number":"1","pages":"83","note":"Rigonato, Janaina Budinich, Marko Murillo, Alejandro A Brandao, Manoela C Pierella Karlusich, Juan J Soviadan, Yawouvi Dodji Gregory, Ann C Endo, Hisashi Kokoszka, Florian Vik, Dean Henry, Nicolas Fremont, Paul Labadie, Karine Zayed, Ahmed A Dimier, Celine Picheral, Marc Searson, Sarah Poulain, Julie Kandels, Stefanie Pesant, Stephane Karsenti, Eric Bork, Peer Bowler, Chris de Vargas, Colomban Eveillard, Damien Gehlen, Marion Iudicone, Daniele Lombard, Fabien Ogata, Hiroyuki Stemmann, Lars Sullivan, Matthew B Sunagawa, Shinichi Wincker, Patrick Chaffron, Samuel Jaillon, Olivier eng England 2023/08/19 ISME Commun. 2023 Aug 18;3(1):83. doi: 10.1038/s43705-023-00279-9.","abstract":"For decades, marine plankton have been investigated for their capacity to modulate biogeochemical cycles and provide fishery resources. 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One module gathers prokaryotes, pico-eukaryotes and Nucleo-Cytoplasmic Large DNA Viruses (NCLDV) from oxic regions, and the two other modules are enriched in OMZ prokaryotes and OMZ pico-eukaryotes, respectively. We hypothesize that OMZ conditions led to a diversification of ecological niches, and thus communities, due to selective pressure from limited resources. Our study further clarifies the interplay between environmental factors in the mesopelagic oxic and OMZ, and the compositional features of communities.","issn":"2730-6151 (Electronic) 2730-6151 (Print) 2730-6151 (Linking)","doi":"10.1038/s43705-023-00279-9","url":"https://www.ncbi.nlm.nih.gov/pubmed/37596349","year":"2023","bibtex":"@article{RN293,\r\n author = {Rigonato, J. and Budinich, M. and Murillo, A. A. and Brandao, M. C. and Pierella Karlusich, J. J. and Soviadan, Y. D. and Gregory, A. C. and Endo, H. and Kokoszka, F. and Vik, D. and Henry, N. and Fremont, P. and Labadie, K. and Zayed, A. A. and Dimier, C. and Picheral, M. and Searson, S. and Poulain, J. and Kandels, S. and Pesant, S. and Karsenti, E. and Tara Oceans, coordinators and Bork, P. and Bowler, C. and de Vargas, C. and Eveillard, D. and Gehlen, M. and Iudicone, D. and Lombard, F. and Ogata, H. and Stemmann, L. and Sullivan, M. B. and Sunagawa, S. and Wincker, P. and Chaffron, S. and Jaillon, O.},\r\n title = {Ocean-wide comparisons of mesopelagic planktonic community structures},\r\n journal = {ISME Commun},\r\n volume = {3},\r\n number = {1},\r\n pages = {83},\r\n note = {Rigonato, Janaina\r\nBudinich, Marko\r\nMurillo, Alejandro A\r\nBrandao, Manoela C\r\nPierella Karlusich, Juan J\r\nSoviadan, Yawouvi Dodji\r\nGregory, Ann C\r\nEndo, Hisashi\r\nKokoszka, Florian\r\nVik, Dean\r\nHenry, Nicolas\r\nFremont, Paul\r\nLabadie, Karine\r\nZayed, Ahmed A\r\nDimier, Celine\r\nPicheral, Marc\r\nSearson, Sarah\r\nPoulain, Julie\r\nKandels, Stefanie\r\nPesant, Stephane\r\nKarsenti, Eric\r\nBork, Peer\r\nBowler, Chris\r\nde Vargas, Colomban\r\nEveillard, Damien\r\nGehlen, Marion\r\nIudicone, Daniele\r\nLombard, Fabien\r\nOgata, Hiroyuki\r\nStemmann, Lars\r\nSullivan, Matthew B\r\nSunagawa, Shinichi\r\nWincker, Patrick\r\nChaffron, Samuel\r\nJaillon, Olivier\r\neng\r\nEngland\r\n2023/08/19\r\nISME Commun. 2023 Aug 18;3(1):83. doi: 10.1038/s43705-023-00279-9.},\r\n abstract = {For decades, marine plankton have been investigated for their capacity to modulate biogeochemical cycles and provide fishery resources. 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One module gathers prokaryotes, pico-eukaryotes and Nucleo-Cytoplasmic Large DNA Viruses (NCLDV) from oxic regions, and the two other modules are enriched in OMZ prokaryotes and OMZ pico-eukaryotes, respectively. We hypothesize that OMZ conditions led to a diversification of ecological niches, and thus communities, due to selective pressure from limited resources. Our study further clarifies the interplay between environmental factors in the mesopelagic oxic and OMZ, and the compositional features of communities.},\r\n ISSN = {2730-6151 (Electronic)\r\n2730-6151 (Print)\r\n2730-6151 (Linking)},\r\n DOI = {10.1038/s43705-023-00279-9},\r\n url = {https://www.ncbi.nlm.nih.gov/pubmed/37596349},\r\n year = {2023},\r\n type = {Journal Article}\r\n}\r\n\r\n","author_short":["Rigonato, J.","Budinich, M.","Murillo, A. A.","Brandao, M. C.","Pierella Karlusich, J. J.","Soviadan, Y. D.","Gregory, A. C.","Endo, H.","Kokoszka, F.","Vik, D.","Henry, N.","Fremont, P.","Labadie, K.","Zayed, A. 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