@article{RN258,
   author = {Royo-Llonch, M. and Sanchez, P. and Ruiz-Gonzalez, C. and Salazar, G. and Pedros-Alio, C. and Sebastian, M. and Labadie, K. and Paoli, L. and F, M. Ibarbalz and Zinger, L. and Churcheward, B. and Tara Oceans, Coordinators and Chaffron, S. and Eveillard, D. and Karsenti, E. and Sunagawa, S. and Wincker, P. and Karp-Boss, L. and Bowler, C. and Acinas, S. G.},
   title = {Compendium of 530 metagenome-assembled bacterial and archaeal genomes from the polar Arctic Ocean},
   journal = {Nat Microbiol},
   volume = {6},
   number = {12},
   pages = {1561-1574},
   note = {Royo-Llonch, Marta
Sanchez, Pablo
Ruiz-Gonzalez, Clara
Salazar, Guillem
Pedros-Alio, Carlos
Sebastian, Marta
Labadie, Karine
Paoli, Lucas
M Ibarbalz, Federico
Zinger, Lucie
Churcheward, Benjamin
Chaffron, Samuel
Eveillard, Damien
Karsenti, Eric
Sunagawa, Shinichi
Wincker, Patrick
Karp-Boss, Lee
Bowler, Chris
Acinas, Silvia G
eng
Research Support, Non-U.S. Gov't
England
Nat Microbiol. 2021 Dec;6(12):1561-1574. doi: 10.1038/s41564-021-00979-9. Epub 2021 Nov 15.},
   abstract = {The role of the Arctic Ocean ecosystem in climate regulation may depend on the responses of marine microorganisms to environmental change. We applied genome-resolved metagenomics to 41 Arctic seawater samples, collected at various depths in different seasons during the Tara Oceans Polar Circle expedition, to evaluate the ecology, metabolic potential and activity of resident bacteria and archaea. We assembled 530 metagenome-assembled genomes (MAGs) to form the Arctic MAGs catalogue comprising 526 species. A total of 441 MAGs belonged to species that have not previously been reported and 299 genomes showed an exclusively polar distribution. Most Arctic MAGs have large genomes and the potential for fast generation times, both of which may enable adaptation to a copiotrophic lifestyle in nutrient-rich waters. We identified 38 habitat generalists and 111 specialists in the Arctic Ocean. We also found a general prevalence of 14 mixotrophs, while chemolithoautotrophs were mostly present in the mesopelagic layer during spring and autumn. We revealed 62 MAGs classified as key Arctic species, found only in the Arctic Ocean, showing the highest gene expression values and predicted to have habitat-specific traits. The Artic MAGs catalogue will inform our understanding of polar microorganisms that drive global biogeochemical cycles.},
   keywords = {Archaea/classification/*genetics/isolation & purification
Arctic Regions
Bacteria/classification/*genetics/isolation & purification
Ecosystem
Genome, Archaeal
Genome, Bacterial
Metagenome
Phylogeny
Seawater/*microbiology},
   ISSN = {2058-5276 (Electronic)
2058-5276 (Linking)},
   DOI = {10.1038/s41564-021-00979-9},
   url = {https://www.ncbi.nlm.nih.gov/pubmed/34782724},
   year = {2021},
   type = {Journal Article}
}

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G."],"bibdata":{"bibtype":"article","type":"Journal Article","author":[{"propositions":[],"lastnames":["Royo-Llonch"],"firstnames":["M."],"suffixes":[]},{"propositions":[],"lastnames":["Sanchez"],"firstnames":["P."],"suffixes":[]},{"propositions":[],"lastnames":["Ruiz-Gonzalez"],"firstnames":["C."],"suffixes":[]},{"propositions":[],"lastnames":["Salazar"],"firstnames":["G."],"suffixes":[]},{"propositions":[],"lastnames":["Pedros-Alio"],"firstnames":["C."],"suffixes":[]},{"propositions":[],"lastnames":["Sebastian"],"firstnames":["M."],"suffixes":[]},{"propositions":[],"lastnames":["Labadie"],"firstnames":["K."],"suffixes":[]},{"propositions":[],"lastnames":["Paoli"],"firstnames":["L."],"suffixes":[]},{"propositions":[],"lastnames":["F"],"firstnames":["M.","Ibarbalz"],"suffixes":[]},{"propositions":[],"lastnames":["Zinger"],"firstnames":["L."],"suffixes":[]},{"propositions":[],"lastnames":["Churcheward"],"firstnames":["B."],"suffixes":[]},{"propositions":[],"lastnames":["Tara","Oceans"],"firstnames":["Coordinators"],"suffixes":[]},{"propositions":[],"lastnames":["Chaffron"],"firstnames":["S."],"suffixes":[]},{"propositions":[],"lastnames":["Eveillard"],"firstnames":["D."],"suffixes":[]},{"propositions":[],"lastnames":["Karsenti"],"firstnames":["E."],"suffixes":[]},{"propositions":[],"lastnames":["Sunagawa"],"firstnames":["S."],"suffixes":[]},{"propositions":[],"lastnames":["Wincker"],"firstnames":["P."],"suffixes":[]},{"propositions":[],"lastnames":["Karp-Boss"],"firstnames":["L."],"suffixes":[]},{"propositions":[],"lastnames":["Bowler"],"firstnames":["C."],"suffixes":[]},{"propositions":[],"lastnames":["Acinas"],"firstnames":["S.","G."],"suffixes":[]}],"title":"Compendium of 530 metagenome-assembled bacterial and archaeal genomes from the polar Arctic Ocean","journal":"Nat Microbiol","volume":"6","number":"12","pages":"1561-1574","note":"Royo-Llonch, Marta Sanchez, Pablo Ruiz-Gonzalez, Clara Salazar, Guillem Pedros-Alio, Carlos Sebastian, Marta Labadie, Karine Paoli, Lucas M Ibarbalz, Federico Zinger, Lucie Churcheward, Benjamin Chaffron, Samuel Eveillard, Damien Karsenti, Eric Sunagawa, Shinichi Wincker, Patrick Karp-Boss, Lee Bowler, Chris Acinas, Silvia G eng Research Support, Non-U.S. Gov't England Nat Microbiol. 2021 Dec;6(12):1561-1574. doi: 10.1038/s41564-021-00979-9. Epub 2021 Nov 15.","abstract":"The role of the Arctic Ocean ecosystem in climate regulation may depend on the responses of marine microorganisms to environmental change. We applied genome-resolved metagenomics to 41 Arctic seawater samples, collected at various depths in different seasons during the Tara Oceans Polar Circle expedition, to evaluate the ecology, metabolic potential and activity of resident bacteria and archaea. We assembled 530 metagenome-assembled genomes (MAGs) to form the Arctic MAGs catalogue comprising 526 species. A total of 441 MAGs belonged to species that have not previously been reported and 299 genomes showed an exclusively polar distribution. Most Arctic MAGs have large genomes and the potential for fast generation times, both of which may enable adaptation to a copiotrophic lifestyle in nutrient-rich waters. We identified 38 habitat generalists and 111 specialists in the Arctic Ocean. We also found a general prevalence of 14 mixotrophs, while chemolithoautotrophs were mostly present in the mesopelagic layer during spring and autumn. We revealed 62 MAGs classified as key Arctic species, found only in the Arctic Ocean, showing the highest gene expression values and predicted to have habitat-specific traits. The Artic MAGs catalogue will inform our understanding of polar microorganisms that drive global biogeochemical cycles.","keywords":"Archaea/classification/*genetics/isolation & purification Arctic Regions Bacteria/classification/*genetics/isolation & purification Ecosystem Genome, Archaeal Genome, Bacterial Metagenome Phylogeny Seawater/*microbiology","issn":"2058-5276 (Electronic) 2058-5276 (Linking)","doi":"10.1038/s41564-021-00979-9","url":"https://www.ncbi.nlm.nih.gov/pubmed/34782724","year":"2021","bibtex":"@article{RN258,\r\n author = {Royo-Llonch, M. and Sanchez, P. and Ruiz-Gonzalez, C. and Salazar, G. and Pedros-Alio, C. and Sebastian, M. and Labadie, K. and Paoli, L. and F, M. Ibarbalz and Zinger, L. and Churcheward, B. and Tara Oceans, Coordinators and Chaffron, S. and Eveillard, D. and Karsenti, E. and Sunagawa, S. and Wincker, P. and Karp-Boss, L. and Bowler, C. and Acinas, S. G.},\r\n title = {Compendium of 530 metagenome-assembled bacterial and archaeal genomes from the polar Arctic Ocean},\r\n journal = {Nat Microbiol},\r\n volume = {6},\r\n number = {12},\r\n pages = {1561-1574},\r\n note = {Royo-Llonch, Marta\r\nSanchez, Pablo\r\nRuiz-Gonzalez, Clara\r\nSalazar, Guillem\r\nPedros-Alio, Carlos\r\nSebastian, Marta\r\nLabadie, Karine\r\nPaoli, Lucas\r\nM Ibarbalz, Federico\r\nZinger, Lucie\r\nChurcheward, Benjamin\r\nChaffron, Samuel\r\nEveillard, Damien\r\nKarsenti, Eric\r\nSunagawa, Shinichi\r\nWincker, Patrick\r\nKarp-Boss, Lee\r\nBowler, Chris\r\nAcinas, Silvia G\r\neng\r\nResearch Support, Non-U.S. Gov't\r\nEngland\r\nNat Microbiol. 2021 Dec;6(12):1561-1574. doi: 10.1038/s41564-021-00979-9. Epub 2021 Nov 15.},\r\n abstract = {The role of the Arctic Ocean ecosystem in climate regulation may depend on the responses of marine microorganisms to environmental change. We applied genome-resolved metagenomics to 41 Arctic seawater samples, collected at various depths in different seasons during the Tara Oceans Polar Circle expedition, to evaluate the ecology, metabolic potential and activity of resident bacteria and archaea. We assembled 530 metagenome-assembled genomes (MAGs) to form the Arctic MAGs catalogue comprising 526 species. A total of 441 MAGs belonged to species that have not previously been reported and 299 genomes showed an exclusively polar distribution. Most Arctic MAGs have large genomes and the potential for fast generation times, both of which may enable adaptation to a copiotrophic lifestyle in nutrient-rich waters. We identified 38 habitat generalists and 111 specialists in the Arctic Ocean. We also found a general prevalence of 14 mixotrophs, while chemolithoautotrophs were mostly present in the mesopelagic layer during spring and autumn. We revealed 62 MAGs classified as key Arctic species, found only in the Arctic Ocean, showing the highest gene expression values and predicted to have habitat-specific traits. The Artic MAGs catalogue will inform our understanding of polar microorganisms that drive global biogeochemical cycles.},\r\n keywords = {Archaea/classification/*genetics/isolation & purification\r\nArctic Regions\r\nBacteria/classification/*genetics/isolation & purification\r\nEcosystem\r\nGenome, Archaeal\r\nGenome, Bacterial\r\nMetagenome\r\nPhylogeny\r\nSeawater/*microbiology},\r\n ISSN = {2058-5276 (Electronic)\r\n2058-5276 (Linking)},\r\n DOI = {10.1038/s41564-021-00979-9},\r\n url = {https://www.ncbi.nlm.nih.gov/pubmed/34782724},\r\n year = {2021},\r\n type = {Journal Article}\r\n}\r\n\r\n","author_short":["Royo-Llonch, M.","Sanchez, P.","Ruiz-Gonzalez, C.","Salazar, G.","Pedros-Alio, C.","Sebastian, M.","Labadie, K.","Paoli, L.","F, M. 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