@techreport{
 title = {Summary of the National Center for Genome Analysis Support (NCGAS) 2018 de Novo Transcriptome Workflow and Workshop},
 type = {techreport},
 year = {2018},
 keywords = {NCGAS,NSF Report,Transcriptome Assembly,Workshop},
 websites = {https://scholarworks.iu.edu/dspace/handle/2022/22254},
 month = {6},
 day = {7},
 id = {d81eb260-ae70-3b34-929a-07aca2b774bc},
 created = {2020-09-09T21:03:42.928Z},
 accessed = {2020-09-09},
 file_attached = {true},
 profile_id = {42d295c0-0737-38d6-8b43-508cab6ea85d},
 last_modified = {2020-09-15T22:44:01.385Z},
 read = {false},
 starred = {false},
 authored = {true},
 confirmed = {false},
 hidden = {false},
 citation_key = {Sanders2018},
 folder_uuids = {3b35931e-fb6d-48f9-8e01-87ee16ef0331},
 private_publication = {false},
 abstract = {The National Center for Genome Analysis Support (NCGAS) held a workshop entitled "de novo Assembly of Transcriptomes using HPC Resources" on April 30th, 2018 through May 1, 2018. This workshop was in serving NCGAS's mission of enabling the biological research community to analyze, understand, and make use of the genomic information now available by packaging our now seven years of experience assisting with de novo transcriptome assemblies and running High Performance Computing (HPC) resources into a documented, easily approachable workflow for our users. The workshop covered common questions and problems that our users have had in HC (such as job handling, resource availability, data management, and troubleshooting) and in the construction of transcriptomes (such as software choices, combination of assemblies, and downstream analyses). The two-day workshop also highlighted the available resources for US scientists, concentrating heavily on available XSEDE resources for analyses, visualization, and archiving of data.},
 bibtype = {techreport},
 author = {Sanders, Sheri A and Ganote, Carrie L and Papudeshi, Bhavya and Stewart, Craig A and Doak, Thomas G}
}

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