Intertwining phylogenetic trees and networks. Schliep, K., Potts, A. J., Morrison, D. A., & Grimm, G. W. Methods in Ecology and Evolution, 8(10):1212–1220, 2017. ![Intertwining phylogenetic trees and networks [link]](https://bibbase.org/img/filetypes/link.svg "link")
Paper doi abstract bibtex The fields of phylogenetic tree and network inference have dramatically advanced in the past decade, but independently with few attempts to bridge them. Here we provide a framework, implemented in the phangorn library in R, to transfer information between trees and networks. This includes: (i) identifying and labelling equivalent tree branches and network edges, (ii) transferring tree branch support to network edges, and (iii) mapping bipartition support from a sample of trees (e.g. from bootstrapping or Bayesian inference) onto network edges. The ability to readily combine tree and network information should lead to more comprehensive evolutionary comparisons and inferences.
@article{schliep2017Intertwining,
title = {Intertwining phylogenetic trees and networks},
volume = {8},
copyright = {© 2017 The Authors. Methods in Ecology and Evolution © 2017 British Ecological Society},
issn = {2041-210X},
url = {https://besjournals.onlinelibrary.wiley.com/doi/abs/10.1111/2041-210X.12760},
doi = {10.1111/2041-210X.12760},
abstract = {The fields of phylogenetic tree and network inference have dramatically advanced in the past decade, but independently with few attempts to bridge them. Here we provide a framework, implemented in the phangorn library in R, to transfer information between trees and networks. This includes: (i) identifying and labelling equivalent tree branches and network edges, (ii) transferring tree branch support to network edges, and (iii) mapping bipartition support from a sample of trees (e.g. from bootstrapping or Bayesian inference) onto network edges. The ability to readily combine tree and network information should lead to more comprehensive evolutionary comparisons and inferences.},
language = {en},
number = {10},
urldate = {2020-02-23},
journal = {Methods in Ecology and Evolution},
author = {Schliep, Klaus and Potts, Alastair J. and Morrison, David A. and Grimm, Guido W.},
year = {2017},
keywords = {R, exploratory data analysis, networks, phangorn, trees},
pages = {1212--1220}
}
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