Consensus statement: Virus taxonomy in the age of metagenomics. Simmonds, P., Adams, M. J., Benkő, M., Breitbart, M., Brister, J. R., Carstens, E. B., Davison, A. J., Delwart, E., Gorbalenya, A. E., Harrach, B., Hull, R., King, A. M. Q., Koonin, E. V., Krupovic, M., Kuhn, J. H., Lefkowitz, E. J., Nibert, M. L., Orton, R., Roossinck, M. J., Sabanadzovic, S., Sullivan, M. B., Suttle, C. A., Tesh, R. B., van der Vlugt, R. A., Varsani, A., & Zerbini, F. M. Nature Reviews. Microbiology, 15(3):161--168, March, 2017. doi abstract bibtex The number and diversity of viral sequences that are identified in metagenomic data far exceeds that of experimentally characterized virus isolates. In a recent workshop, a panel of experts discussed the proposal that, with appropriate quality control, viruses that are known only from metagenomic data can, and should be, incorporated into the official classification scheme of the International Committee on Taxonomy of Viruses (ICTV). Although a taxonomy that is based on metagenomic sequence data alone represents a substantial departure from the traditional reliance on phenotypic properties, the development of a robust framework for sequence-based virus taxonomy is indispensable for the comprehensive characterization of the global virome. In this Consensus Statement article, we consider the rationale for why metagenomic sequence data should, and how it can, be incorporated into the ICTV taxonomy, and present proposals that have been endorsed by the Executive Committee of the ICTV.
@article{simmonds_consensus_2017,
title = {Consensus statement: {Virus} taxonomy in the age of metagenomics},
volume = {15},
issn = {1740-1534},
shorttitle = {Consensus statement},
doi = {10.1038/nrmicro.2016.177},
abstract = {The number and diversity of viral sequences that are identified in metagenomic data far exceeds that of experimentally characterized virus isolates. In a recent workshop, a panel of experts discussed the proposal that, with appropriate quality control, viruses that are known only from metagenomic data can, and should be, incorporated into the official classification scheme of the International Committee on Taxonomy of Viruses (ICTV). Although a taxonomy that is based on metagenomic sequence data alone represents a substantial departure from the traditional reliance on phenotypic properties, the development of a robust framework for sequence-based virus taxonomy is indispensable for the comprehensive characterization of the global virome. In this Consensus Statement article, we consider the rationale for why metagenomic sequence data should, and how it can, be incorporated into the ICTV taxonomy, and present proposals that have been endorsed by the Executive Committee of the ICTV.},
language = {eng},
number = {3},
journal = {Nature Reviews. Microbiology},
author = {Simmonds, Peter and Adams, Mike J. and Benkő, Mária and Breitbart, Mya and Brister, J. Rodney and Carstens, Eric B. and Davison, Andrew J. and Delwart, Eric and Gorbalenya, Alexander E. and Harrach, Balázs and Hull, Roger and King, Andrew M. Q. and Koonin, Eugene V. and Krupovic, Mart and Kuhn, Jens H. and Lefkowitz, Elliot J. and Nibert, Max L. and Orton, Richard and Roossinck, Marilyn J. and Sabanadzovic, Sead and Sullivan, Matthew B. and Suttle, Curtis A. and Tesh, Robert B. and van der Vlugt, René A. and Varsani, Arvind and Zerbini, F. Murilo},
month = mar,
year = {2017},
pmid = {28134265},
keywords = {Base Sequence, High-Throughput Nucleotide Sequencing, Metagenomics, Viruses},
pages = {161--168}
}
Downloads: 0
{"_id":"iqErdhiwwu7ZhsZhs","bibbaseid":"simmonds-adams-benk-breitbart-brister-carstens-davison-delwart-etal-consensusstatementvirustaxonomyintheageofmetagenomics-2017","downloads":0,"creationDate":"2017-08-31T17:02:20.828Z","title":"Consensus statement: Virus taxonomy in the age of metagenomics","author_short":["Simmonds, P.","Adams, M. J.","Benkő, M.","Breitbart, M.","Brister, J. R.","Carstens, E. B.","Davison, A. J.","Delwart, E.","Gorbalenya, A. E.","Harrach, B.","Hull, R.","King, A. M. Q.","Koonin, E. V.","Krupovic, M.","Kuhn, J. H.","Lefkowitz, E. J.","Nibert, M. L.","Orton, R.","Roossinck, M. J.","Sabanadzovic, S.","Sullivan, M. B.","Suttle, C. A.","Tesh, R. B.","van der Vlugt, R. A.","Varsani, A.","Zerbini, F. M."],"year":2017,"bibtype":"article","biburl":"http://bibbase.org/zotero/jordanashworth","bibdata":{"bibtype":"article","type":"article","title":"Consensus statement: Virus taxonomy in the age of metagenomics","volume":"15","issn":"1740-1534","shorttitle":"Consensus statement","doi":"10.1038/nrmicro.2016.177","abstract":"The number and diversity of viral sequences that are identified in metagenomic data far exceeds that of experimentally characterized virus isolates. In a recent workshop, a panel of experts discussed the proposal that, with appropriate quality control, viruses that are known only from metagenomic data can, and should be, incorporated into the official classification scheme of the International Committee on Taxonomy of Viruses (ICTV). Although a taxonomy that is based on metagenomic sequence data alone represents a substantial departure from the traditional reliance on phenotypic properties, the development of a robust framework for sequence-based virus taxonomy is indispensable for the comprehensive characterization of the global virome. In this Consensus Statement article, we consider the rationale for why metagenomic sequence data should, and how it can, be incorporated into the ICTV taxonomy, and present proposals that have been endorsed by the Executive Committee of the ICTV.","language":"eng","number":"3","journal":"Nature Reviews. Microbiology","author":[{"propositions":[],"lastnames":["Simmonds"],"firstnames":["Peter"],"suffixes":[]},{"propositions":[],"lastnames":["Adams"],"firstnames":["Mike","J."],"suffixes":[]},{"propositions":[],"lastnames":["Benkő"],"firstnames":["Mária"],"suffixes":[]},{"propositions":[],"lastnames":["Breitbart"],"firstnames":["Mya"],"suffixes":[]},{"propositions":[],"lastnames":["Brister"],"firstnames":["J.","Rodney"],"suffixes":[]},{"propositions":[],"lastnames":["Carstens"],"firstnames":["Eric","B."],"suffixes":[]},{"propositions":[],"lastnames":["Davison"],"firstnames":["Andrew","J."],"suffixes":[]},{"propositions":[],"lastnames":["Delwart"],"firstnames":["Eric"],"suffixes":[]},{"propositions":[],"lastnames":["Gorbalenya"],"firstnames":["Alexander","E."],"suffixes":[]},{"propositions":[],"lastnames":["Harrach"],"firstnames":["Balázs"],"suffixes":[]},{"propositions":[],"lastnames":["Hull"],"firstnames":["Roger"],"suffixes":[]},{"propositions":[],"lastnames":["King"],"firstnames":["Andrew","M.","Q."],"suffixes":[]},{"propositions":[],"lastnames":["Koonin"],"firstnames":["Eugene","V."],"suffixes":[]},{"propositions":[],"lastnames":["Krupovic"],"firstnames":["Mart"],"suffixes":[]},{"propositions":[],"lastnames":["Kuhn"],"firstnames":["Jens","H."],"suffixes":[]},{"propositions":[],"lastnames":["Lefkowitz"],"firstnames":["Elliot","J."],"suffixes":[]},{"propositions":[],"lastnames":["Nibert"],"firstnames":["Max","L."],"suffixes":[]},{"propositions":[],"lastnames":["Orton"],"firstnames":["Richard"],"suffixes":[]},{"propositions":[],"lastnames":["Roossinck"],"firstnames":["Marilyn","J."],"suffixes":[]},{"propositions":[],"lastnames":["Sabanadzovic"],"firstnames":["Sead"],"suffixes":[]},{"propositions":[],"lastnames":["Sullivan"],"firstnames":["Matthew","B."],"suffixes":[]},{"propositions":[],"lastnames":["Suttle"],"firstnames":["Curtis","A."],"suffixes":[]},{"propositions":[],"lastnames":["Tesh"],"firstnames":["Robert","B."],"suffixes":[]},{"propositions":["van","der"],"lastnames":["Vlugt"],"firstnames":["René","A."],"suffixes":[]},{"propositions":[],"lastnames":["Varsani"],"firstnames":["Arvind"],"suffixes":[]},{"propositions":[],"lastnames":["Zerbini"],"firstnames":["F.","Murilo"],"suffixes":[]}],"month":"March","year":"2017","pmid":"28134265","keywords":"Base Sequence, High-Throughput Nucleotide Sequencing, Metagenomics, Viruses","pages":"161--168","bibtex":"@article{simmonds_consensus_2017,\n\ttitle = {Consensus statement: {Virus} taxonomy in the age of metagenomics},\n\tvolume = {15},\n\tissn = {1740-1534},\n\tshorttitle = {Consensus statement},\n\tdoi = {10.1038/nrmicro.2016.177},\n\tabstract = {The number and diversity of viral sequences that are identified in metagenomic data far exceeds that of experimentally characterized virus isolates. In a recent workshop, a panel of experts discussed the proposal that, with appropriate quality control, viruses that are known only from metagenomic data can, and should be, incorporated into the official classification scheme of the International Committee on Taxonomy of Viruses (ICTV). Although a taxonomy that is based on metagenomic sequence data alone represents a substantial departure from the traditional reliance on phenotypic properties, the development of a robust framework for sequence-based virus taxonomy is indispensable for the comprehensive characterization of the global virome. In this Consensus Statement article, we consider the rationale for why metagenomic sequence data should, and how it can, be incorporated into the ICTV taxonomy, and present proposals that have been endorsed by the Executive Committee of the ICTV.},\n\tlanguage = {eng},\n\tnumber = {3},\n\tjournal = {Nature Reviews. Microbiology},\n\tauthor = {Simmonds, Peter and Adams, Mike J. and Benkő, Mária and Breitbart, Mya and Brister, J. Rodney and Carstens, Eric B. and Davison, Andrew J. and Delwart, Eric and Gorbalenya, Alexander E. and Harrach, Balázs and Hull, Roger and King, Andrew M. Q. and Koonin, Eugene V. and Krupovic, Mart and Kuhn, Jens H. and Lefkowitz, Elliot J. and Nibert, Max L. and Orton, Richard and Roossinck, Marilyn J. and Sabanadzovic, Sead and Sullivan, Matthew B. and Suttle, Curtis A. and Tesh, Robert B. and van der Vlugt, René A. and Varsani, Arvind and Zerbini, F. Murilo},\n\tmonth = mar,\n\tyear = {2017},\n\tpmid = {28134265},\n\tkeywords = {Base Sequence, High-Throughput Nucleotide Sequencing, Metagenomics, Viruses},\n\tpages = {161--168}\n}\n\n","author_short":["Simmonds, P.","Adams, M. J.","Benkő, M.","Breitbart, M.","Brister, J. R.","Carstens, E. B.","Davison, A. J.","Delwart, E.","Gorbalenya, A. E.","Harrach, B.","Hull, R.","King, A. M. Q.","Koonin, E. V.","Krupovic, M.","Kuhn, J. H.","Lefkowitz, E. J.","Nibert, M. L.","Orton, R.","Roossinck, M. J.","Sabanadzovic, S.","Sullivan, M. B.","Suttle, C. A.","Tesh, R. B.","van der Vlugt, R. A.","Varsani, A.","Zerbini, F. M."],"key":"simmonds_consensus_2017","id":"simmonds_consensus_2017","bibbaseid":"simmonds-adams-benk-breitbart-brister-carstens-davison-delwart-etal-consensusstatementvirustaxonomyintheageofmetagenomics-2017","role":"author","urls":{},"keyword":["Base Sequence","High-Throughput Nucleotide Sequencing","Metagenomics","Viruses"],"downloads":0},"search_terms":["consensus","statement","virus","taxonomy","age","metagenomics","simmonds","adams","benkő","breitbart","brister","carstens","davison","delwart","gorbalenya","harrach","hull","king","koonin","krupovic","kuhn","lefkowitz","nibert","orton","roossinck","sabanadzovic","sullivan","suttle","tesh","van der vlugt","varsani","zerbini"],"keywords":["base sequence","high-throughput nucleotide sequencing","metagenomics","viruses"],"authorIDs":[],"dataSources":["BBpzLHanDZ6NX8vCB"]}