The Genome of the Sea Urchin Strongylocentrotus purpuratus. Sodergren, E., Weinstock, G. M., Davidson, E. H., Cameron, R. A., Gibbs, R. A., Angerer, R. C., Angerer, L. M., Arnone, M. I., Burgess, D. R., Burke, R. D., Coffman, J. A., Dean, M., Elphick, M. R., Ettensohn, C. A., Foltz, K. R., Hamdoun, A., Hynes, R. O., Klein, W. H., Marzluff, W., McClay, D. R., Morris, R. L., Mushegian, A., Rast, J. P., Smith, L. C., Thorndyke, M. C., Vacquier, V. D., Wessel, G. M., Wray, G., Zhang, L., Elsik, C. G., Ermolaeva, O., Hlavina, W., Hofmann, G., Kitts, P., Landrum, M. J., Mackey, A. J., Maglott, D., Panopoulou, G., Poustka, A. J., Pruitt, K., Sapojnikov, V., Song, X., Souvorov, A., Solovyev, V., Wei, Z., Whittaker, C. A., Worley, K., Durbin, K. J., Shen, Y., Fedrigo, O., Garfield, D., Haygood, R., Primus, A., Satija, R., Severson, T., Gonzalez-Garay, M. L., Jackson, A. R., Milosavljevic, A., Tong, M., Killian, C. E., Livingston, B. T., Wilt, F. H., Adams, N., Bellé, R., Carbonneau, S., Cheung, R., Cormier, P., Cosson, B., Croce, J., Fernandez-Guerra, A., Genevière, A., Goel, M., Kelkar, H., Morales, J., Mulner-Lorillon, O., Robertson, A. J., Goldstone, J. V., Cole, B., Epel, D., Gold, B., Hahn, M. E., Howard-Ashby, M., Scally, M., Stegeman, J. J., Allgood, E. L., Cool, J., Judkins, K. M., McCafferty, S. S., Musante, A. M., Obar, R. A., Rawson, A. P., Rossetti, B. J., Gibbons, I. R., Hoffman, M. P., Leone, A., Istrail, S., Materna, S. C., Samanta, M. P., Stolc, V., Tongprasit, W., Tu, Q., Bergeron, K., Brandhorst, B. P., Whittle, J., Berney, K., Bottjer, D. J., Calestani, C., Peterson, K., Chow, E., Yuan, Q. A., Elhaik, E., Graur, D., Reese, J. T., Bosdet, I., Heesun, S., Marra, M. A., Schein, J., Anderson, M. K., Brockton, V., Buckley, K. M., Cohen, A. H., Fugmann, S. D., Hibino, T., Loza-Coll, M., Majeske, A. J., Messier, C., Nair, S. V., Pancer, Z., Terwilliger, D. P., Agca, C., Arboleda, E., Chen, N., Churcher, A. M., Hallböök, F., Humphrey, G. W., Idris, M. M., Kiyama, T., Liang, S., Mellott, D., Mu, X., Murray, G., Olinski, R. P., Raible, F., Rowe, M., Taylor, J. S., Tessmar-Raible, K., Wang, D., Wilson, K. H., Yaguchi, S., Gaasterland, T., Galindo, B. E., Gunaratne, H. J., Juliano, C., Kinukawa, M., Moy, G. W., Neill, A. T., Nomura, M., Raisch, M., Reade, A., Roux, M. M., Song, J. L., Su, Y., Townley, I. K., Voronina, E., Wong, J. L., Amore, G., Branno, M., Brown, E. R., Cavalieri, V., Duboc, V., Duloquin, L., Flytzanis, C., Gache, C., Lapraz, F., Lepage, T., Locascio, A., Martinez, P., Matassi, G., Matranga, V., Range, R., Rizzo, F., Röttinger, E., Beane, W., Bradham, C., Byrum, C., Glenn, T., Hussain, S., Manning, G., Miranda, E., Thomason, R., Walton, K., Wikramanayke, A., Wu, S., Xu, R., Brown, C. T., Chen, L., Gray, R. F., Lee, P. Y., Nam, J., Oliveri, P., Smith, J., Muzny, D., Bell, S., Chacko, J., Cree, A., Curry, S., Davis, C., Dinh, H., Dugan-Rocha, S., Fowler, J., Gill, R., Hamilton, C., Hernandez, J., Hines, S., Hume, J., Jackson, L., Jolivet, A., Kovar, C., Lee, S., Lewis, L., Miner, G., Morgan, M., Nazareth, L. V., Okwuonu, G., Parker, D., Pu, L., Thorn, R., & Wright, R. Science, 314(5801):941–952, November, 2006. Publisher: American Association for the Advancement of Science Section: Special Research Articles
The Genome of the Sea Urchin Strongylocentrotus purpuratus [link]Paper  doi  abstract   bibtex   
We report the sequence and analysis of the 814-megabase genome of the sea urchin Strongylocentrotus purpuratus, a model for developmental and systems biology. The sequencing strategy combined whole-genome shotgun and bacterial artificial chromosome (BAC) sequences. This use of BAC clones, aided by a pooling strategy, overcame difficulties associated with high heterozygosity of the genome. The genome encodes about 23,300 genes, including many previously thought to be vertebrate innovations or known only outside the deuterostomes. This echinoderm genome provides an evolutionary outgroup for the chordates and yields insights into the evolution of deuterostomes.
@article{sodergren_genome_2006,
	title = {The {Genome} of the {Sea} {Urchin} {Strongylocentrotus} purpuratus},
	volume = {314},
	copyright = {American Association for the Advancement of Science},
	issn = {0036-8075, 1095-9203},
	url = {https://science.sciencemag.org/content/314/5801/941},
	doi = {10.1126/science.1133609},
	abstract = {We report the sequence and analysis of the 814-megabase genome of the sea urchin Strongylocentrotus purpuratus, a model for developmental and systems biology. The sequencing strategy combined whole-genome shotgun and bacterial artificial chromosome (BAC) sequences. This use of BAC clones, aided by a pooling strategy, overcame difficulties associated with high heterozygosity of the genome. The genome encodes about 23,300 genes, including many previously thought to be vertebrate innovations or known only outside the deuterostomes. This echinoderm genome provides an evolutionary outgroup for the chordates and yields insights into the evolution of deuterostomes.},
	language = {en},
	number = {5801},
	urldate = {2020-03-03},
	journal = {Science},
	author = {Sodergren, Erica and Weinstock, George M. and Davidson, Eric H. and Cameron, R. Andrew and Gibbs, Richard A. and Angerer, Robert C. and Angerer, Lynne M. and Arnone, Maria Ina and Burgess, David R. and Burke, Robert D. and Coffman, James A. and Dean, Michael and Elphick, Maurice R. and Ettensohn, Charles A. and Foltz, Kathy R. and Hamdoun, Amro and Hynes, Richard O. and Klein, William H. and Marzluff, William and McClay, David R. and Morris, Robert L. and Mushegian, Arcady and Rast, Jonathan P. and Smith, L. Courtney and Thorndyke, Michael C. and Vacquier, Victor D. and Wessel, Gary M. and Wray, Greg and Zhang, Lan and Elsik, Christine G. and Ermolaeva, Olga and Hlavina, Wratko and Hofmann, Gretchen and Kitts, Paul and Landrum, Melissa J. and Mackey, Aaron J. and Maglott, Donna and Panopoulou, Georgia and Poustka, Albert J. and Pruitt, Kim and Sapojnikov, Victor and Song, Xingzhi and Souvorov, Alexandre and Solovyev, Victor and Wei, Zheng and Whittaker, Charles A. and Worley, Kim and Durbin, K. James and Shen, Yufeng and Fedrigo, Olivier and Garfield, David and Haygood, Ralph and Primus, Alexander and Satija, Rahul and Severson, Tonya and Gonzalez-Garay, Manuel L. and Jackson, Andrew R. and Milosavljevic, Aleksandar and Tong, Mark and Killian, Christopher E. and Livingston, Brian T. and Wilt, Fred H. and Adams, Nikki and Bellé, Robert and Carbonneau, Seth and Cheung, Rocky and Cormier, Patrick and Cosson, Bertrand and Croce, Jenifer and Fernandez-Guerra, Antonio and Genevière, Anne-Marie and Goel, Manisha and Kelkar, Hemant and Morales, Julia and Mulner-Lorillon, Odile and Robertson, Anthony J. and Goldstone, Jared V. and Cole, Bryan and Epel, David and Gold, Bert and Hahn, Mark E. and Howard-Ashby, Meredith and Scally, Mark and Stegeman, John J. and Allgood, Erin L. and Cool, Jonah and Judkins, Kyle M. and McCafferty, Shawn S. and Musante, Ashlan M. and Obar, Robert A. and Rawson, Amanda P. and Rossetti, Blair J. and Gibbons, Ian R. and Hoffman, Matthew P. and Leone, Andrew and Istrail, Sorin and Materna, Stefan C. and Samanta, Manoj P. and Stolc, Viktor and Tongprasit, Waraporn and Tu, Qiang and Bergeron, Karl-Frederik and Brandhorst, Bruce P. and Whittle, James and Berney, Kevin and Bottjer, David J. and Calestani, Cristina and Peterson, Kevin and Chow, Elly and Yuan, Qiu Autumn and Elhaik, Eran and Graur, Dan and Reese, Justin T. and Bosdet, Ian and Heesun, Shin and Marra, Marco A. and Schein, Jacqueline and Anderson, Michele K. and Brockton, Virginia and Buckley, Katherine M. and Cohen, Avis H. and Fugmann, Sebastian D. and Hibino, Taku and Loza-Coll, Mariano and Majeske, Audrey J. and Messier, Cynthia and Nair, Sham V. and Pancer, Zeev and Terwilliger, David P. and Agca, Cavit and Arboleda, Enrique and Chen, Nansheng and Churcher, Allison M. and Hallböök, F. and Humphrey, Glen W. and Idris, Mohammed M. and Kiyama, Takae and Liang, Shuguang and Mellott, Dan and Mu, Xiuqian and Murray, Greg and Olinski, Robert P. and Raible, Florian and Rowe, Matthew and Taylor, John S. and Tessmar-Raible, Kristin and Wang, D. and Wilson, Karen H. and Yaguchi, Shunsuke and Gaasterland, Terry and Galindo, Blanca E. and Gunaratne, Herath J. and Juliano, Celina and Kinukawa, Masashi and Moy, Gary W. and Neill, Anna T. and Nomura, Mamoru and Raisch, Michael and Reade, Anna and Roux, Michelle M. and Song, Jia L. and Su, Yi-Hsien and Townley, Ian K. and Voronina, Ekaterina and Wong, Julian L. and Amore, Gabriele and Branno, Margherita and Brown, Euan R. and Cavalieri, Vincenzo and Duboc, Véronique and Duloquin, Louise and Flytzanis, Constantin and Gache, Christian and Lapraz, François and Lepage, Thierry and Locascio, Annamaria and Martinez, Pedro and Matassi, Giorgio and Matranga, Valeria and Range, Ryan and Rizzo, Francesca and Röttinger, Eric and Beane, Wendy and Bradham, Cynthia and Byrum, Christine and Glenn, Tom and Hussain, Sofia and Manning, Gerard and Miranda, Esther and Thomason, Rebecca and Walton, Katherine and Wikramanayke, Athula and Wu, Shu-Yu and Xu, Ronghui and Brown, C. Titus and Chen, Lili and Gray, Rachel F. and Lee, Pei Yun and Nam, Jongmin and Oliveri, Paola and Smith, Joel and Muzny, Donna and Bell, Stephanie and Chacko, Joseph and Cree, Andrew and Curry, Stacey and Davis, Clay and Dinh, Huyen and Dugan-Rocha, Shannon and Fowler, Jerry and Gill, Rachel and Hamilton, Cerrissa and Hernandez, Judith and Hines, Sandra and Hume, Jennifer and Jackson, LaRonda and Jolivet, Angela and Kovar, Christie and Lee, Sandra and Lewis, Lora and Miner, George and Morgan, Margaret and Nazareth, Lynne V. and Okwuonu, Geoffrey and Parker, David and Pu, Ling-Ling and Thorn, Rachel and Wright, Rita},
	month = nov,
	year = {2006},
	pmid = {17095691},
	note = {Publisher: American Association for the Advancement of Science
Section: Special Research Articles},
	keywords = {Yaguchi S},
	pages = {941--952}
}
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