Michigan Molecular Interactions R2: From Interacting Proteins to Pathways. Tarcea, V. G., Weymouth, T., Ade, A., Bookvich, A., Gao, J., Mahavisno, V., Wright, Z., Chapman, A., Jayapandian, M., Ozgür, A., Tian, Y., Cavalcoli, J., Mirel, B., Patel, J., Radev, D., Athey, B., States, D., & Jagadish, H. Nucleic.~Acids Res., 37(Database issue):D642-6, Jan, 2009. doi abstract bibtex Molecular interaction data exists in a number of repositories, each with its own data format, molecule identifier and information coverage. Michigan molecular interactions (MiMI) assists scientists searching through this profusion of molecular interaction data. The original release of MiMI gathered data from well-known protein interaction databases, and deep merged this information while keeping track of provenance. Based on the feedback received from users, MiMI has been completely redesigned. This article describes the resulting MiMI Release 2 (MiMIr2). New functionality includes extension from proteins to genes and to pathways; identification of highlighted sentences in source publications; seamless two-way linkage with Cytoscape; query facilities based on MeSH/GO terms and other concepts; approximate graph matching to find relevant pathways; support for querying in bulk; and a user focus-group driven interface design. MiMI is part of the NIH's; National Center for Integrative Biomedical Informatics (NCIBI) and is publicly available at: http://mimi.ncibi.org.
@article{Tarcea:2009ly,
Abstract = {Molecular interaction data exists in a number of repositories, each with its own data format, molecule identifier and information coverage. Michigan molecular interactions (MiMI) assists scientists searching through this profusion of molecular interaction data. The original release of MiMI gathered data from well-known protein interaction databases, and deep merged this information while keeping track of provenance. Based on the feedback received from users, MiMI has been completely redesigned. This article describes the resulting MiMI Release 2 (MiMIr2). New functionality includes extension from proteins to genes and to pathways; identification of highlighted sentences in source publications; seamless two-way linkage with Cytoscape; query facilities based on MeSH/GO terms and other concepts; approximate graph matching to find relevant pathways; support for querying in bulk; and a user focus-group driven interface design. MiMI is part of the NIH's; National Center for Integrative Biomedical Informatics (NCIBI) and is publicly available at: http://mimi.ncibi.org.},
Author = {Tarcea, V. Glenn and Weymouth, Terry and Ade, Alex and Bookvich, Aaron and Gao, Jing and Mahavisno, Vasudeva and Wright, Zach and Chapman, Adriane and Jayapandian, Magesh and Ozg{\"u}r, Arzucan and Tian, Yuanyuan and Cavalcoli, Jim and Mirel, Barbara and Patel, Jignesh and Radev, Dragomir and Athey, Brian and States, David and Jagadish, H.V.},
Date-Added = {2011-11-07 11:53:21 -0500},
Date-Modified = {2011-11-14 23:09:33 -0500},
Doi = {10.1093/nar/gkn722},
Journal = {Nucleic.~Acids Res.},
Journal-Full = {Nucleic acids research},
Mesh = {Computer Graphics; Databases, Protein; Protein Interaction Mapping; Proteins; User-Computer Interface},
Month = {Jan},
Number = {Database issue},
Pages = {D642-6},
Pmc = {PMC2686565},
Pmid = {18978014},
Pst = {ppublish},
Title = {Michigan Molecular Interactions {R2}: {F}rom Interacting Proteins to Pathways},
Volume = {37},
Year = {2009},
Bdsk-Url-1 = {http://dx.doi.org/10.1093/nar/gkn722}}
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