The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance. Tegally, H., San, J. E., Cotten, M., Moir, M., Tegomoh, B., Mboowa, G., Martin, D. P., Baxter, C., Lambisia, A. W., Diallo, A., Amoako, D. G., Diagne, M. M., Sisay, A., Zekri, A. N., Gueye, A. S., Sangare, A. K., Ouedraogo, A., Sow, A., Musa, A. O., Sesay, A. K., Abias, A. G., Elzagheid, A. I., Lagare, A., Kemi, A., Abar, A. E., Johnson, A. A., Fowotade, A., Oluwapelumi, A. O., Amuri, A. A., Juru, A., Kandeil, A., Mostafa, A., Rebai, A., Sayed, A., Kazeem, A., Balde, A., Christoffels, A., Trotter, A. J., Campbell, A., Keita, A. K., Kone, A., Bouzid, A., Souissi, A., Agweyu, A., Naguib, A., Gutierrez, A. V., Nkeshimana, A., Page, A. J., Yadouleton, A., Vinze, A., Happi, A. N., Chouikha, A., Iranzadeh, A., Maharaj, A., Batchi-Bouyou, A. L., Ismail, A., Sylverken, A. A., Goba, A., Femi, A., Sijuwola, A. E., Marycelin, B., Salako, B. L., Oderinde, B. S., Bolajoko, B., Diarra, B., Herring, B. L., Tsofa, B., Lekana-Douki, B., Mvula, B., Njanpop-Lafourcade, B., Marondera, B. T., Khaireh, B. A., Kouriba, B., Adu, B., Pool, B., McInnis, B., Brook, C., Williamson, C., Nduwimana, C., Anscombe, C., Pratt, C. B., Scheepers, C., Akoua-Koffi, C. G., Agoti, C. N., Mapanguy, C. M., Loucoubar, C., Onwuamah, C. K., Ihekweazu, C., Malaka, C. N., Peyrefitte, C., Grace, C., Omoruyi, C. E., Rafaï, C. D., Morang'a, C. M., Erameh, C., Lule, D. B., Bridges, D. J., Mukadi-Bamuleka, D., Park, D., Rasmussen, D. A., Baker, D., Nokes, D. J., Ssemwanga, D., Tshiabuila, D., Amuzu, D. S. Y., Goedhals, D., Grant, D. S., Omuoyo, D. O., Maruapula, D., Wanjohi, D. W., Foster-Nyarko, E., Lusamaki, E. K., Simulundu, E., Ong'era, E. M., Ngabana, E. N., Abworo, E. O., Otieno, E., Shumba, E., Barasa, E., Ahmed, E. B., Ahmed, E. A., Lokilo, E., Mukantwari, E., Philomena, E., Belarbi, E., Simon-Loriere, E., Anoh, E. A., Manuel, E., Leendertz, F., Taweh, F. M., Wasfi, F., Abdelmoula, F., Takawira, F. T., Derrar, F., Ajogbasile, F. V., Treurnicht, F., Onikepe, F., Ntoumi, F., Muyembe, F. M., Ragomzingba, F. E. Z., Dratibi, F. A., Iyanu, F., Mbunsu, G. K., Thilliez, G., Kay, G. L., Akpede, G. O., van Zyl, G. U., Awandare, G. A., Kpeli, G. S., Schubert, G., Maphalala, G. P., Ranaivoson, H. C., Omunakwe, H. E., Onywera, H., Abe, H., Karray, H., Nansumba, H., Triki, H., Kadjo, H. A. A., Elgahzaly, H., Gumbo, H., Mathieu, H., Kavunga-Membo, H., Smeti, I., Olawoye, I. B., Adetifa, I. M. O., Odia, I., Boubaker, I. B. -., Mohammad, I. A., Ssewanyana, I., Wurie, I., Konstantinus, I. S., Halatoko, J. W. A., Ayei, J., Sonoo, J., Makangara, J. C., Tamfum, J. M., Heraud, J., Shaffer, J. G., Giandhari, J., Musyoki, J., Nkurunziza, J., Uwanibe, J. N., Bhiman, J. N., Yasuda, J., Morais, J., Kiconco, J., Sandi, J. D., Huddleston, J., Odoom, J. K., Morobe, J. M., Gyapong, J. O., Kayiwa, J. T., Okolie, J. C., Xavier, J. S., Gyamfi, J., Wamala, J. F., Bonney, J. H. K., Nyandwi, J., Everatt, J., Nakaseegu, J., Ngoi, J. M., Namulondo, J., Oguzie, J. U., Andeko, J. C., Lutwama, J. J., Mogga, J. J. H., O'Grady, J., Siddle, K. J., Victoir, K., Adeyemi, K. T., Tumedi, K. A., Carvalho, K. S., Mohammed, K. S., Dellagi, K., Musonda, K. G., Duedu, K. O., Fki-Berrajah, L., Singh, L., Kepler, L. M., Biscornet, L., Martins, L. d. O., Chabuka, L., Olubayo, L., Ojok, L. D., Deng, L. L., Ochola-Oyier, L. I., Tyers, L., Mine, M., Ramuth, M., Mastouri, M., ElHefnawi, M., Mbanne, M., Matsheka, M. I., Kebabonye, M., Diop, M., Momoh, M., Mendonça, M. d. L. L., Venter, M., Paye, M. F., Faye, M., Nyaga, M. M., Mareka, M., Damaris, M., Mburu, M. W., Mpina, M. G., Owusu, M., Wiley, M. R., Tatfeng, M. Y., Ayekaba, M. O., Abouelhoda, M., Beloufa, M. A., Seadawy, M. G., Khalifa, M. K., Matobo, M. M., Kane, M., Salou, M., Mbulawa, M. B., Mwenda, M., Allam, M., Phan, M. V. T., Abid, N., Rujeni, N., Abuzaid, N., Ismael, N., Elguindy, N., Top, N. M., Dia, N., Mabunda, N., Hsiao, N., Silochi, N. B., Francisco, N. M., Saasa, N., Bbosa, N., Murunga, N., Gumede, N., Wolter, N., Sitharam, N., Ndodo, N., Ajayi, N. A., Tordo, N., Mbhele, N., Razanajatovo, N. H., Iguosadolo, N., Mba, N., Kingsley, O. C., Sylvanus, O., Femi, O., Adewumi, O. M., Testimony, O., Ogunsanya, O. A., Fakayode, O., Ogah, O. E., Oludayo, O., Faye, O., Smith-Lawrence, P., Ondoa, P., Combe, P., Nabisubi, P., Semanda, P., Oluniyi, P. E., Arnaldo, P., Quashie, P. K., Okokhere, P. O., Bejon, P., Dussart, P., Bester, P. A., Mbala, P. K., Kaleebu, P., Abechi, P., El-Shesheny, R., Joseph, R., Aziz, R. K., Essomba, R. G., Ayivor-Djanie, R., Njouom, R., Phillips, R. O., Gorman, R., Kingsley, R. A., Rodrigues, R. M. D. E. S. A. N., Audu, R. A., Carr, R. A. A., Gargouri, S., Masmoudi, S., Bootsma, S., Sankhe, S., Mohamed, S. I., Femi, S., Mhalla, S., Hosch, S., Kassim, S. K., Metha, S., Trabelsi, S., Agwa, S. H., Mwangi, S. W., Doumbia, S., Makiala-Mandanda, S., Aryeetey, S., Ahmed, S. S., Ahmed, S. M., Elhamoumi, S., Moyo, S., Lutucuta, S., Gaseitsiwe, S., Jalloh, S., Andriamandimby, S. F., Oguntope, S., Grayo, S., Lekana-Douki, S., Prosolek, S., Ouangraoua, S., van Wyk, S., Schaffner, S. F., Kanyerezi, S., Ahuka-Mundeke, S., Rudder, S., Pillay, S., Nabadda, S., Behillil, S., Budiaki, S. L., van der Werf, S., Mashe, T., Mohale, T., Le-Viet, T., Velavan, T. P., Schindler, T., Maponga, T. G., Bedford, T., Anyaneji, U. J., Chinedu, U., Ramphal, U., George, U. E., Enouf, V., Nene, V., Gorova, V., Roshdy, W. H., Karim, W. A., Ampofo, W. K., Preiser, W., Choga, W. T., Ahmed, Y. A., Ramphal, Y., Bediako, Y., Naidoo, Y., Butera, Y., de Laurent, Z. R., (NGS-Afro), N. f. G. S. i. A., Ouma, A. E. O., von Gottberg, A., Githinji, G., Moeti, M., Tomori, O., Sabeti, P. C., Sall, A. A., Oyola, S. O., Tebeje, Y. K., Tessema, S. K., de Oliveira, T., Happi, C., Lessells, R., Nkengasong, J., & Wilkinson, E. Science, 378(6615):eabq5358, American Association for the Advancement of Science, sep, 2022.
The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance [link]Paper  doi  abstract   bibtex   
Investment in SARS-CoV-2 sequencing in Africa over the past year has led to a major increase in the number of sequences generated, now exceeding 100,000 genomes, used to track the pandemic on the c...
@article{Tegally2022c,
abstract = {Investment in SARS-CoV-2 sequencing in Africa over the past year has led to a major increase in the number of sequences generated, now exceeding 100,000 genomes, used to track the pandemic on the c...},
author = {Tegally, Houriiyah and San, James E. and Cotten, Matthew and Moir, Monika and Tegomoh, Bryan and Mboowa, Gerald and Martin, Darren P. and Baxter, Cheryl and Lambisia, Arnold W. and Diallo, Amadou and Amoako, Daniel G. and Diagne, Moussa M. and Sisay, Abay and Zekri, Abdel-Rahman N. and Gueye, Abdou Salam and Sangare, Abdoul K. and Ouedraogo, Abdoul-Salam and Sow, Abdourahmane and Musa, Abdualmoniem O. and Sesay, Abdul K. and Abias, Abe G. and Elzagheid, Adam I. and Lagare, Adamou and Kemi, Adedotun-Sulaiman and Abar, Aden Elmi and Johnson, Adeniji A. and Fowotade, Adeola and Oluwapelumi, Adeyemi O. and Amuri, Adrienne A. and Juru, Agnes and Kandeil, Ahmed and Mostafa, Ahmed and Rebai, Ahmed and Sayed, Ahmed and Kazeem, Akano and Balde, Aladje and Christoffels, Alan and Trotter, Alexander J. and Campbell, Allan and Keita, Alpha K. and Kone, Amadou and Bouzid, Amal and Souissi, Amal and Agweyu, Ambrose and Naguib, Amel and Gutierrez, Ana V. and Nkeshimana, Anatole and Page, Andrew J. and Yadouleton, Anges and Vinze, Anika and Happi, Anise N. and Chouikha, Anissa and Iranzadeh, Arash and Maharaj, Arisha and Batchi-Bouyou, Armel L. and Ismail, Arshad and Sylverken, Augustina A. and Goba, Augustine and Femi, Ayoade and Sijuwola, Ayotunde E. and Marycelin, Baba and Salako, Babatunde L. and Oderinde, Bamidele S. and Bolajoko, Bankole and Diarra, Bassirou and Herring, Belinda L. and Tsofa, Benjamin and Lekana-Douki, Bernard and Mvula, Bernard and Njanpop-Lafourcade, Berthe-Marie and Marondera, Blessing T. and Khaireh, Bouh Abdi and Kouriba, Bourema and Adu, Bright and Pool, Brigitte and McInnis, Bronwyn and Brook, Cara and Williamson, Carolyn and Nduwimana, Cassien and Anscombe, Catherine and Pratt, Catherine B. and Scheepers, Cathrine and Akoua-Koffi, Chantal G. and Agoti, Charles N. and Mapanguy, Chastel M. and Loucoubar, Cheikh and Onwuamah, Chika K. and Ihekweazu, Chikwe and Malaka, Christian N. and Peyrefitte, Christophe and Grace, Chukwa and Omoruyi, Chukwuma E. and Rafa{\"{i}}, Clotaire D. and Morang'a, Collins M. and Erameh, Cyril and Lule, Daniel B. and Bridges, Daniel J. and Mukadi-Bamuleka, Daniel and Park, Danny and Rasmussen, David A. and Baker, David and Nokes, David J. and Ssemwanga, Deogratius and Tshiabuila, Derek and Amuzu, Dominic S. Y. and Goedhals, Dominique and Grant, Donald S. and Omuoyo, Donwilliams O. and Maruapula, Dorcas and Wanjohi, Dorcas W. and Foster-Nyarko, Ebenezer and Lusamaki, Eddy K. and Simulundu, Edgar and Ong'era, Edidah M. and Ngabana, Edith N. and Abworo, Edward O. and Otieno, Edward and Shumba, Edwin and Barasa, Edwine and Ahmed, El Bara and Ahmed, Elhadi A. and Lokilo, Emmanuel and Mukantwari, Enatha and Philomena, Eromon and Belarbi, Essia and Simon-Loriere, Etienne and Anoh, Etil{\'{e}} A. and Manuel, Eusebio and Leendertz, Fabian and Taweh, Fahn M. and Wasfi, Fares and Abdelmoula, Fatma and Takawira, Faustinos T. and Derrar, Fawzi and Ajogbasile, Fehintola V. and Treurnicht, Florette and Onikepe, Folarin and Ntoumi, Francine and Muyembe, Francisca M. and Ragomzingba, Frank E. Z. and Dratibi, Fred A. and Iyanu, Fred-Akintunwa and Mbunsu, Gabriel K. and Thilliez, Gaetan and Kay, Gemma L. and Akpede, George O. and van Zyl, Gert U. and Awandare, Gordon A. and Kpeli, Grace S. and Schubert, Grit and Maphalala, Gugu P. and Ranaivoson, Hafaliana C. and Omunakwe, Hannah E. and Onywera, Harris and Abe, Haruka and Karray, Hela and Nansumba, Hellen and Triki, Henda and Kadjo, Herve Alb{\'{e}}ric Adje and Elgahzaly, Hesham and Gumbo, Hlanai and Mathieu, Hota and Kavunga-Membo, Hugo and Smeti, Ibtihel and Olawoye, Idowu B. and Adetifa, Ifedayo M. O. and Odia, Ikponmwosa and Boubaker, Ilhem Boutiba -Ben and Mohammad, Iluoreh Ahmed and Ssewanyana, Isaac and Wurie, Isatta and Konstantinus, Iyaloo S. and Halatoko, Jacqueline Wemboo Afiwa and Ayei, James and Sonoo, Janaki and Makangara, Jean-Claude C. and Tamfum, Jean-Jacques M. and Heraud, Jean-Michel and Shaffer, Jeffrey G. and Giandhari, Jennifer and Musyoki, Jennifer and Nkurunziza, Jerome and Uwanibe, Jessica N. and Bhiman, Jinal N. and Yasuda, Jiro and Morais, Joana and Kiconco, Jocelyn and Sandi, John D. and Huddleston, John and Odoom, John K. and Morobe, John M. and Gyapong, John O. and Kayiwa, John T. and Okolie, Johnson C. and Xavier, Joicymara S. and Gyamfi, Jones and Wamala, Joseph F. and Bonney, Joseph H. K. and Nyandwi, Joseph and Everatt, Josie and Nakaseegu, Joweria and Ngoi, Joyce M. and Namulondo, Joyce and Oguzie, Judith U. and Andeko, Julia C. and Lutwama, Julius J. and Mogga, Juma J. H. and O'Grady, Justin and Siddle, Katherine J. and Victoir, Kathleen and Adeyemi, Kayode T. and Tumedi, Kefentse A. and Carvalho, Kevin S. and Mohammed, Khadija Said and Dellagi, Koussay and Musonda, Kunda G. and Duedu, Kwabena O. and Fki-Berrajah, Lamia and Singh, Lavanya and Kepler, Lenora M. and Biscornet, Leon and Martins, Leonardo de Oliveira and Chabuka, Lucious and Olubayo, Luicer and Ojok, Lul Deng and Deng, Lul Lojok and Ochola-Oyier, Lynette I. and Tyers, Lynn and Mine, Madisa and Ramuth, Magalutcheemee and Mastouri, Maha and ElHefnawi, Mahmoud and Mbanne, Maimouna and Matsheka, Maitshwarelo I. and Kebabonye, Malebogo and Diop, Mamadou and Momoh, Mambu and Mendon{\c{c}}a, Maria da Luz Lima and Venter, Marietjie and Paye, Marietou F. and Faye, Martin and Nyaga, Martin M. and Mareka, Mathabo and Damaris, Matoke-Muhia and Mburu, Maureen W. and Mpina, Maximillian G. and Owusu, Michael and Wiley, Michael R. and Tatfeng, Mirabeau Y. and Ayekaba, Mitoha Ondo'o and Abouelhoda, Mohamed and Beloufa, Mohamed Amine and Seadawy, Mohamed G. and Khalifa, Mohamed K. and Matobo, Mooko Marethabile and Kane, Mouhamed and Salou, Mounerou and Mbulawa, Mphaphi B. and Mwenda, Mulenga and Allam, Mushal and Phan, My V. T. and Abid, Nabil and Rujeni, Nadine and Abuzaid, Nadir and Ismael, Nalia and Elguindy, Nancy and Top, Ndeye Marieme and Dia, Ndongo and Mabunda, N{\'{e}}dio and Hsiao, Nei-yuan and Silochi, Nelson Boric{\'{o}} and Francisco, Ngiambudulu M. and Saasa, Ngonda and Bbosa, Nicholas and Murunga, Nickson and Gumede, Nicksy and Wolter, Nicole and Sitharam, Nikita and Ndodo, Nnaemeka and Ajayi, Nnennaya A. and Tordo, No{\"{e}}l and Mbhele, Nokuzola and Razanajatovo, Norosoa H. and Iguosadolo, Nosamiefan and Mba, Nwando and Kingsley, Ojide C. and Sylvanus, Okogbenin and Femi, Oladiji and Adewumi, Olubusuyi M. and Testimony, Olumade and Ogunsanya, Olusola A. and Fakayode, Oluwatosin and Ogah, Onwe E. and Oludayo, Ope-Ewe and Faye, Ousmane and Smith-Lawrence, Pamela and Ondoa, Pascale and Combe, Patrice and Nabisubi, Patricia and Semanda, Patrick and Oluniyi, Paul E. and Arnaldo, Paulo and Quashie, Peter Kojo and Okokhere, Peter O. and Bejon, Philip and Dussart, Philippe and Bester, Phillip A. and Mbala, Placide K. and Kaleebu, Pontiano and Abechi, Priscilla and El-Shesheny, Rabeh and Joseph, Rageema and Aziz, Ramy Karam and Essomba, Ren{\'{e}} G. and Ayivor-Djanie, Reuben and Njouom, Richard and Phillips, Richard O. and Gorman, Richmond and Kingsley, Robert A. and Rodrigues, Rosa Maria D. E. S. A. Neto and Audu, Rosemary A. and Carr, Rosina A. A. and Gargouri, Saba and Masmoudi, Saber and Bootsma, Sacha and Sankhe, Safietou and Mohamed, Sahra Isse and Femi, Saibu and Mhalla, Salma and Hosch, Salome and Kassim, Samar Kamal and Metha, Samar and Trabelsi, Sameh and Agwa, Sara Hassan and Mwangi, Sarah Wambui and Doumbia, Seydou and Makiala-Mandanda, Sheila and Aryeetey, Sherihane and Ahmed, Shymaa S. and Ahmed, Side Mohamed and Elhamoumi, Siham and Moyo, Sikhulile and Lutucuta, Silvia and Gaseitsiwe, Simani and Jalloh, Simbirie and Andriamandimby, Soa Fy and Oguntope, Sobajo and Grayo, Sol{\`{e}}ne and Lekana-Douki, Sonia and Prosolek, Sophie and Ouangraoua, Soumeya and van Wyk, Stephanie and Schaffner, Stephen F. and Kanyerezi, Stephen and Ahuka-Mundeke, Steve and Rudder, Steven and Pillay, Sureshnee and Nabadda, Susan and Behillil, Sylvie and Budiaki, Sylvie L. and van der Werf, Sylvie and Mashe, Tapfumanei and Mohale, Thabo and Le-Viet, Thanh and Velavan, Thirumalaisamy P. and Schindler, Tobias and Maponga, Tongai G. and Bedford, Trevor and Anyaneji, Ugochukwu J. and Chinedu, Ugwu and Ramphal, Upasana and George, Uwem E. and Enouf, Vincent and Nene, Vishvanath and Gorova, Vivianne and Roshdy, Wael H. and Karim, Wasim Abdul and Ampofo, William K. and Preiser, Wolfgang and Choga, Wonderful T. and Ahmed, Yahaya Ali and Ramphal, Yajna and Bediako, Yaw and Naidoo, Yeshnee and Butera, Yvan and de Laurent, Zaydah R. and (NGS-Afro), Network for Genomic Surveillance in Africa and Ouma, Ahmed E. O. and von Gottberg, Anne and Githinji, George and Moeti, Matshidiso and Tomori, Oyewale and Sabeti, Pardis C. and Sall, Amadou A. and Oyola, Samuel O. and Tebeje, Yenew K. and Tessema, Sofonias K. and de Oliveira, Tulio and Happi, Christian and Lessells, Richard and Nkengasong, John and Wilkinson, Eduan},
doi = {10.1126/SCIENCE.ABQ5358},
file = {:C$\backslash$:/Users/01462563/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Tegally et al. - 2022 - The evolving SARS-CoV-2 epidemic in Africa Insights from rapidly expanding genomic surveillance(2).pdf:pdf},
issn = {0036-8075},
journal = {Science},
keywords = {OA,fund{\_}ack,original},
mendeley-tags = {OA,fund{\_}ack,original},
month = {sep},
number = {6615},
pages = {eabq5358},
publisher = {American Association for the Advancement of Science},
title = {{The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance}},
url = {https://www.science.org/doi/10.1126/science.abq5358},
volume = {378},
year = {2022}
}

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