A comprehensive profile of circulating RNAs in human serum. Umu, S. U., Langseth, H., Bucher-Jonannessen, C., Fromm, B., Keller, A., Meese, E., Lauritzen, M., Leithaug, M., Lyle, R., & Rounge, T. bioRxiv, Cold Spring Harbor Laboratory, 2017. ![A comprehensive profile of circulating RNAs in human serum [link]](https://bibbase.org/img/filetypes/link.svg "link")
Paper doi abstract bibtex 1 download Non-coding RNA (ncRNA) molecules have fundamental roles in cells and many are also stable in body fluids as extracellular RNAs. In this study, we used RNA sequencing (RNA-seq) to investigate the profile of small non-coding RNA (sncRNA) in human serum. We analyzed 10 billion lllumina reads from 477 serum samples, included in the Norwegian population-based Janus Serum Bank (JSB). We found that the core serum RNA repertoire includes 258 micro RNAs (miRNA), 441 piwi-interacting RNAs (piRNA), 411 transfer RNAs (tRNA), 24 small nucleolar RNAs (snoRNA), 125 small nuclear RNAs (snRNA) and 123 miscellaneous RNAs (misc-RNA). We also investigated biological and technical variation in expression, and the results suggest that many RNA molecules identified in serum contain signs of biological variation. They are therefore unlikely to be random degradation by-products. In addition, the presence of specific fragments of tRNA, snoRNA, Vault RNA and Y_RNA indicates protection from degradation. Our results suggest that many circulating RNAs in serum can be potential biomarkers.
@article {Umu186320,
author = {Umu, Sinan U{\u g}ur and Langseth, Hilde and Bucher-Jonannessen, Cecilie and Fromm, Bastian and Keller, Andreas and Meese, Eckart and Lauritzen, Marianne and Leithaug, Magnus and Lyle, Robert and Rounge, Trine},
title = {A comprehensive profile of circulating RNAs in human serum},
elocation-id = {186320},
year = {2017},
doi = {10.1101/186320},
publisher = {Cold Spring Harbor Laboratory},
abstract = {Non-coding RNA (ncRNA) molecules have fundamental roles in cells and many are also stable in body fluids as extracellular RNAs. In this study, we used RNA sequencing (RNA-seq) to investigate the profile of small non-coding RNA (sncRNA) in human serum. We analyzed 10 billion lllumina reads from 477 serum samples, included in the Norwegian population-based Janus Serum Bank (JSB). We found that the core serum RNA repertoire includes 258 micro RNAs (miRNA), 441 piwi-interacting RNAs (piRNA), 411 transfer RNAs (tRNA), 24 small nucleolar RNAs (snoRNA), 125 small nuclear RNAs (snRNA) and 123 miscellaneous RNAs (misc-RNA). We also investigated biological and technical variation in expression, and the results suggest that many RNA molecules identified in serum contain signs of biological variation. They are therefore unlikely to be random degradation by-products. In addition, the presence of specific fragments of tRNA, snoRNA, Vault RNA and Y_RNA indicates protection from degradation. Our results suggest that many circulating RNAs in serum can be potential biomarkers.},
URL = {https://www.biorxiv.org/content/early/2017/09/08/186320},
eprint = {https://www.biorxiv.org/content/early/2017/09/08/186320.full.pdf},
journal = {bioRxiv}
}
Downloads: 1
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In this study, we used RNA sequencing (RNA-seq) to investigate the profile of small non-coding RNA (sncRNA) in human serum. We analyzed 10 billion lllumina reads from 477 serum samples, included in the Norwegian population-based Janus Serum Bank (JSB). We found that the core serum RNA repertoire includes 258 micro RNAs (miRNA), 441 piwi-interacting RNAs (piRNA), 411 transfer RNAs (tRNA), 24 small nucleolar RNAs (snoRNA), 125 small nuclear RNAs (snRNA) and 123 miscellaneous RNAs (misc-RNA). We also investigated biological and technical variation in expression, and the results suggest that many RNA molecules identified in serum contain signs of biological variation. They are therefore unlikely to be random degradation by-products. In addition, the presence of specific fragments of tRNA, snoRNA, Vault RNA and Y_RNA indicates protection from degradation. Our results suggest that many circulating RNAs in serum can be potential biomarkers.","url":"https://www.biorxiv.org/content/early/2017/09/08/186320","eprint":"https://www.biorxiv.org/content/early/2017/09/08/186320.full.pdf","journal":"bioRxiv","bibtex":"@article {Umu186320,\n\tauthor = {Umu, Sinan U{\\u g}ur and Langseth, Hilde and Bucher-Jonannessen, Cecilie and Fromm, Bastian and Keller, Andreas and Meese, Eckart and Lauritzen, Marianne and Leithaug, Magnus and Lyle, Robert and Rounge, Trine},\n\ttitle = {A comprehensive profile of circulating RNAs in human serum},\n\telocation-id = {186320},\n\tyear = {2017},\n\tdoi = {10.1101/186320},\n\tpublisher = {Cold Spring Harbor Laboratory},\n\tabstract = {Non-coding RNA (ncRNA) molecules have fundamental roles in cells and many are also stable in body fluids as extracellular RNAs. In this study, we used RNA sequencing (RNA-seq) to investigate the profile of small non-coding RNA (sncRNA) in human serum. We analyzed 10 billion lllumina reads from 477 serum samples, included in the Norwegian population-based Janus Serum Bank (JSB). We found that the core serum RNA repertoire includes 258 micro RNAs (miRNA), 441 piwi-interacting RNAs (piRNA), 411 transfer RNAs (tRNA), 24 small nucleolar RNAs (snoRNA), 125 small nuclear RNAs (snRNA) and 123 miscellaneous RNAs (misc-RNA). We also investigated biological and technical variation in expression, and the results suggest that many RNA molecules identified in serum contain signs of biological variation. They are therefore unlikely to be random degradation by-products. In addition, the presence of specific fragments of tRNA, snoRNA, Vault RNA and Y_RNA indicates protection from degradation. 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