Fast Algorithms to Enumerate All Common Intervals of Two Permutations. Uno, T. & Yagiura, M. Algorithmica, 26:290–309, 2000.
bibtex   
@Article{uno00fast,
  author    = {Uno, T. and Yagiura, M.},
  title     = {Fast Algorithms to Enumerate All Common Intervals of Two Permutations},
  journal   = {Algorithmica},
  year      = {2000},
  volume    = {26},
  pages     = {290--309},
  keywords  = {gene clusters, genome rearrangements},
  owner     = {Sebastian},
  timestamp = {2009.03.26},
}

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