Exploiting HPC resources for the 3D-time series analysis of caries lesion activity. Zhang, H., Henschel, R., Li, H., Kohara, E., K., Boyles, M., J., & Ando, M. In ACM International Conference Proceeding SeriesProceedings of the 1st Conference of the Extreme Science and Engineering Discovery Environment: Bridging from the eXtreme to the campus and beyond (XSEDE '12), pages 8, 2012. ![Exploiting HPC resources for the 3D-time series analysis of caries lesion activity [link]](https://bibbase.org/img/filetypes/link.svg "link")
Website doi abstract bibtex We present a research framework to analyze 3D-time series caries lesion activity based on collections of SkyScan® μ-CT images taken at different times during the dynamic caries process. Analyzing caries progression (or reversal) is data-driven and computationally demanding. It involves segmenting high-resolution μ-CT images, constructing 3D models suitable for interactive visualization, and analyzing 3D and 4D (3D + time) dental images. Our development exploits XSEDE's supercomputing, storage, and visualization resources to facilitate the knowledge discovery process. In this paper, we describe the required image processing algorithms and then discuss the parallelization of these methods to utilize XSEDE's high performance computing resources. We then present a workflow for visualization and analysis using ParaView. This workflow enables quantitative analysis as well as three-dimensional comparison of multiple temporal datasets from the longitudinal dental research studies. Such quantitative assessment and visualization can help us to understand and evaluate the underlying processes that arise from dental treatment, and therefore can have significant impact in the clinical decision-making process and caries diagnosis. © 2012 ACM.
@inproceedings{
title = {Exploiting HPC resources for the 3D-time series analysis of caries lesion activity},
type = {inproceedings},
year = {2012},
keywords = {3D models,Activity-based,CT Imag,Caries lesions,Computerized tomography,Content based retrieval,Three dimensional},
pages = {8},
websites = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84865327178&doi=10.1145%2F2335755.2335815&partnerID=40&md5=3d17f317032b8023fb6a20dec8aa3163},
city = {Chicago, IL},
id = {4a83fdac-c754-3018-8a07-2efd009c87ce},
created = {2018-02-27T18:07:33.784Z},
file_attached = {false},
profile_id = {42d295c0-0737-38d6-8b43-508cab6ea85d},
group_id = {27e0553c-8ec0-31bd-b42c-825b8a5a9ae8},
last_modified = {2019-08-29T18:55:43.751Z},
read = {false},
starred = {false},
authored = {false},
confirmed = {true},
hidden = {false},
citation_key = {Zhang2012},
source_type = {conference},
notes = {cited By 0; Conference of 1st Conference of the Extreme Science and Engineering Discovery Environment: Bridging from the eXtreme to the Campus and Beyond, XSEDE12 ; Conference Date: 16 July 2012 Through 19 July 2012; Conference Code:92061},
private_publication = {false},
abstract = {We present a research framework to analyze 3D-time series caries lesion activity based on collections of SkyScan® μ-CT images taken at different times during the dynamic caries process. Analyzing caries progression (or reversal) is data-driven and computationally demanding. It involves segmenting high-resolution μ-CT images, constructing 3D models suitable for interactive visualization, and analyzing 3D and 4D (3D + time) dental images. Our development exploits XSEDE's supercomputing, storage, and visualization resources to facilitate the knowledge discovery process. In this paper, we describe the required image processing algorithms and then discuss the parallelization of these methods to utilize XSEDE's high performance computing resources. We then present a workflow for visualization and analysis using ParaView. This workflow enables quantitative analysis as well as three-dimensional comparison of multiple temporal datasets from the longitudinal dental research studies. Such quantitative assessment and visualization can help us to understand and evaluate the underlying processes that arise from dental treatment, and therefore can have significant impact in the clinical decision-making process and caries diagnosis. © 2012 ACM.},
bibtype = {inproceedings},
author = {Zhang, H and Henschel, R and Li, H and Kohara, E K and Boyles, M J and Ando, M},
doi = {10.1145/2335755.2335815},
booktitle = {ACM International Conference Proceeding SeriesProceedings of the 1st Conference of the Extreme Science and Engineering Discovery Environment: Bridging from the eXtreme to the campus and beyond (XSEDE '12)}
}
Downloads: 0
{"_id":"AsrmJgFP8mRRbKAx5","bibbaseid":"zhang-henschel-li-kohara-boyles-ando-exploitinghpcresourcesforthe3dtimeseriesanalysisofcarieslesionactivity-2012","downloads":0,"creationDate":"2018-03-12T19:10:27.151Z","title":"Exploiting HPC resources for the 3D-time series analysis of caries lesion activity","author_short":["Zhang, H.","Henschel, R.","Li, H.","Kohara, E., K.","Boyles, M., J.","Ando, M."],"year":2012,"bibtype":"inproceedings","biburl":"https://bibbase.org/service/mendeley/42d295c0-0737-38d6-8b43-508cab6ea85d","bibdata":{"title":"Exploiting HPC resources for the 3D-time series analysis of caries lesion activity","type":"inproceedings","year":"2012","keywords":"3D models,Activity-based,CT Imag,Caries lesions,Computerized tomography,Content based retrieval,Three dimensional","pages":"8","websites":"https://www.scopus.com/inward/record.uri?eid=2-s2.0-84865327178&doi=10.1145%2F2335755.2335815&partnerID=40&md5=3d17f317032b8023fb6a20dec8aa3163","city":"Chicago, IL","id":"4a83fdac-c754-3018-8a07-2efd009c87ce","created":"2018-02-27T18:07:33.784Z","file_attached":false,"profile_id":"42d295c0-0737-38d6-8b43-508cab6ea85d","group_id":"27e0553c-8ec0-31bd-b42c-825b8a5a9ae8","last_modified":"2019-08-29T18:55:43.751Z","read":false,"starred":false,"authored":false,"confirmed":"true","hidden":false,"citation_key":"Zhang2012","source_type":"conference","notes":"cited By 0; Conference of 1st Conference of the Extreme Science and Engineering Discovery Environment: Bridging from the eXtreme to the Campus and Beyond, XSEDE12 ; Conference Date: 16 July 2012 Through 19 July 2012; Conference Code:92061","private_publication":false,"abstract":"We present a research framework to analyze 3D-time series caries lesion activity based on collections of SkyScan® μ-CT images taken at different times during the dynamic caries process. Analyzing caries progression (or reversal) is data-driven and computationally demanding. It involves segmenting high-resolution μ-CT images, constructing 3D models suitable for interactive visualization, and analyzing 3D and 4D (3D + time) dental images. Our development exploits XSEDE's supercomputing, storage, and visualization resources to facilitate the knowledge discovery process. In this paper, we describe the required image processing algorithms and then discuss the parallelization of these methods to utilize XSEDE's high performance computing resources. We then present a workflow for visualization and analysis using ParaView. This workflow enables quantitative analysis as well as three-dimensional comparison of multiple temporal datasets from the longitudinal dental research studies. Such quantitative assessment and visualization can help us to understand and evaluate the underlying processes that arise from dental treatment, and therefore can have significant impact in the clinical decision-making process and caries diagnosis. © 2012 ACM.","bibtype":"inproceedings","author":"Zhang, H and Henschel, R and Li, H and Kohara, E K and Boyles, M J and Ando, M","doi":"10.1145/2335755.2335815","booktitle":"ACM International Conference Proceeding SeriesProceedings of the 1st Conference of the Extreme Science and Engineering Discovery Environment: Bridging from the eXtreme to the campus and beyond (XSEDE '12)","bibtex":"@inproceedings{\n title = {Exploiting HPC resources for the 3D-time series analysis of caries lesion activity},\n type = {inproceedings},\n year = {2012},\n keywords = {3D models,Activity-based,CT Imag,Caries lesions,Computerized tomography,Content based retrieval,Three dimensional},\n pages = {8},\n websites = {https://www.scopus.com/inward/record.uri?eid=2-s2.0-84865327178&doi=10.1145%2F2335755.2335815&partnerID=40&md5=3d17f317032b8023fb6a20dec8aa3163},\n city = {Chicago, IL},\n id = {4a83fdac-c754-3018-8a07-2efd009c87ce},\n created = {2018-02-27T18:07:33.784Z},\n file_attached = {false},\n profile_id = {42d295c0-0737-38d6-8b43-508cab6ea85d},\n group_id = {27e0553c-8ec0-31bd-b42c-825b8a5a9ae8},\n last_modified = {2019-08-29T18:55:43.751Z},\n read = {false},\n starred = {false},\n authored = {false},\n confirmed = {true},\n hidden = {false},\n citation_key = {Zhang2012},\n source_type = {conference},\n notes = {cited By 0; Conference of 1st Conference of the Extreme Science and Engineering Discovery Environment: Bridging from the eXtreme to the Campus and Beyond, XSEDE12 ; Conference Date: 16 July 2012 Through 19 July 2012; Conference Code:92061},\n private_publication = {false},\n abstract = {We present a research framework to analyze 3D-time series caries lesion activity based on collections of SkyScan® μ-CT images taken at different times during the dynamic caries process. Analyzing caries progression (or reversal) is data-driven and computationally demanding. It involves segmenting high-resolution μ-CT images, constructing 3D models suitable for interactive visualization, and analyzing 3D and 4D (3D + time) dental images. Our development exploits XSEDE's supercomputing, storage, and visualization resources to facilitate the knowledge discovery process. In this paper, we describe the required image processing algorithms and then discuss the parallelization of these methods to utilize XSEDE's high performance computing resources. We then present a workflow for visualization and analysis using ParaView. This workflow enables quantitative analysis as well as three-dimensional comparison of multiple temporal datasets from the longitudinal dental research studies. Such quantitative assessment and visualization can help us to understand and evaluate the underlying processes that arise from dental treatment, and therefore can have significant impact in the clinical decision-making process and caries diagnosis. © 2012 ACM.},\n bibtype = {inproceedings},\n author = {Zhang, H and Henschel, R and Li, H and Kohara, E K and Boyles, M J and Ando, M},\n doi = {10.1145/2335755.2335815},\n booktitle = {ACM International Conference Proceeding SeriesProceedings of the 1st Conference of the Extreme Science and Engineering Discovery Environment: Bridging from the eXtreme to the campus and beyond (XSEDE '12)}\n}","author_short":["Zhang, H.","Henschel, R.","Li, H.","Kohara, E., K.","Boyles, M., J.","Ando, M."],"urls":{"Website":"https://www.scopus.com/inward/record.uri?eid=2-s2.0-84865327178&doi=10.1145%2F2335755.2335815&partnerID=40&md5=3d17f317032b8023fb6a20dec8aa3163"},"biburl":"https://bibbase.org/service/mendeley/42d295c0-0737-38d6-8b43-508cab6ea85d","bibbaseid":"zhang-henschel-li-kohara-boyles-ando-exploitinghpcresourcesforthe3dtimeseriesanalysisofcarieslesionactivity-2012","role":"author","keyword":["3D models","Activity-based","CT Imag","Caries lesions","Computerized tomography","Content based retrieval","Three dimensional"],"metadata":{"authorlinks":{}},"downloads":0},"search_terms":["exploiting","hpc","resources","time","series","analysis","caries","lesion","activity","zhang","henschel","li","kohara","boyles","ando"],"keywords":["3d models","activity-based","ct imag","caries lesions","computerized tomography","content based retrieval","three dimensional"],"authorIDs":[],"dataSources":["zgahneP4uAjKbudrQ","ya2CyA73rpZseyrZ8"]}