Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors

Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors. Zhang, Y., Y., Kong, W., Gao, Y., Liu, X., Gao, K., Xie, H., Wu, Y., Zhang, Y., Y., Wang, J., Gao, F., Wu, X., Jiang, Y., Youssef, N., H., Couger, M., B., Struchtemeyer, C., G., Liggenstoffer, A., S., Prade, R., A., Najar, F., Z., Atiyeh, H., K., Wilkins, M., R., Elshahed, M., S., Wu, Z., Yang, L., Ren, X., He, G., Zhang, J., J., Yang, J., Qian, Z., Dong, J., Sun, L., Zhu, Y., Du, J., Yang, F., Zhang, S., Jin, Q., Uy, K., LeDuc, R., Ganote, C., Tarpy, D., R., Mattila, H., R., Newton, I., I., L., G., Subramanian, S., Chaparala, S., Avali, V., Ganapathiraju, M., K., Stanton-Geddes, J., Paape, T., Epstein, B., Briskine, R., Yoder, J., Mudge, J., Bharti, A., K., Farmer, A., D., Zhou, P., Denny, R., May, G., D., Erlandson, S., Yakub, M., Sugawara, M., Sadowsky, M., J., Young, N., D., Tiffin, P., Sousounis, K., Qi, F., Yadav, M., C., Millan, J., L., Toyama, F., Chiba, C., Eguchi, Y., Eguchi, G., Tsonis, P., A., Roncalli, V., Cieslak, M., C., M., Lenz, P., P., H., Rokop, Z., P., Horton, M., A., Newton, I., I., L., G., Raborn, R., T., Spitze, K., Brendel, V., P., V., Lynch, M., Qin, X., Huang, S., Liu, Y., Bian, M., Shi, W., Zuo, Z., Yang, Z., Pipes, L., Li, S., Bozinoski, M., Palermo, R., E., Peng, X., Blood, P., D., P., Kelly, S., Weiss, J., M., Thierry-Mieg, J., Thierry-Mieg, D., Zumbo, P., Chen, R., Schroth, G., P., Mason, C., E., Katze, M., G., Phuong, M., A., Mahardika, G., N., Peterson, M., Malloy, J., Buonaccorsi, V., Marden, J., Petersen, I., T., Bates, J., E., Dodge, K., A., Lansford, J., E., Pettit, G., S., Peng, X., Pipes, L., Xiong, H., Green, R., R., Jones, D., C., Ruzzo, W., L., Schroth, G., P., Mason, C., E., Palermo, R., E., Katze, M., G., Orsini, L., Gilbert, D., Podicheti, R., Jansen, M., Brown, J., B., Solari, O., S., Spanier, K., I., Colbourne, J., K., Rush, D., Decaestecker, E., Asselman, J., De Schamphelaere, K., A., C., Ebert, D., Haag, C., R., Kvist, J., Laforsch, C., Petrusek, A., Beckerman, A., P., Little, T., J., Chaturvedi, A., Pfrender, M., E., De Meester, L., Frilander, M., J., Newton, I., I., L., G., Sheehan, K., K., B., Motamayor, J., C., Mockaitis, K., Schmutz, J., Haiminen, N., III, D., L., Cornejo, O., Findley, S., D., Zheng, P., Utro, F., Royaert, S., Saski, C., Jenkins, J., Podicheti, R., Zhao, M., Scheffler, B., E., Stack, J., C., Feltus, F., A., Mustiga, G., M., Amores, F., Phillips, W., Marelli, J., P., May, G., D., Shapiro, H., Ma, J., Bustamante, C., D., Schnell, R., J., Main, D., Gilbert, D., Parida, L., Kuhn, D., D., N., McGrath, C., L., C., Gout, J., J., Johri, P., Doak, T., G., T., Yanagi, A., Lynch, M., Martínez, T., Ropelewski, A., J., González-Mendez, R., Vázquez, G., J., Robledo, I., E., Martinez, T., Aquino, E., E., Robledo, I., E., Martinez, I., Vazquez, G., J., Aquino, E., E., Robledo, I., E., Lipovich, L., Hou, Z., Jia, H., Sinkler, C., McGowen, M., Sterner, K., N., Weckle, A., Sugalski, A., B., Pipes, L., Gatti, D., L., Mason, C., E., Sherwood, C., C., Hof, P., R., Kuzawa, C., W., Grossman, L., I., Goodman, M., Wildman, D., E., Kuhn, D., D., N., Dillon, N., Innes, D., Wu, L., Krishnakumar, R., Chen, A., F., Pantovich, M., G., Danial, M., Parchem, R., J., Labosky, P., A., Blelloch, R., Jin, M., Bothfeld, W., Austin, S., Sato, T., Reau, A., L., Huth, T., J., Place, S., P., Horton, M., A., Oliver, R., Newton, I., I., L., G., Gulia-Nuss, M., Nuss, A., B., Meyer, J., M., Sonenshine, D., E., Roe, R., M., Waterhouse, R., M., Sattelle, D., B., de la Fuente, J., Ribeiro, J., M., Megy, K., Thimmapuram, J., Miller, J., R., Walenz, B., P., Koren, S., Hostetler, J., B., Thiagarajan, M., Joardar, V., S., Hannick, L., I., Bidwell, S., Hammond, M., P., Young, S., Zeng, Q., Abrudan, J., L., Almeida, F., C., Ayllon, N., Bhide, K., Bissinger, B., W., Bonzon-Kulichenko, E., Buckingham, S., D., Caffrey, D., R., Caimano, M., J., Croset, V., Driscoll, T., Gilbert, D., Gillespie, J., J., Giraldo-Calderon, G., I., Grabowski, J., M., Jiang, D., Khalil, S., M., S., Kim, D., Kocan, K., M., Koci, J., Kuhn, R., J., Kurtti, T., J., Lees, K., Lang, E., G., Kennedy, R., C., Kwon, H., Perera, R., Qi, Y., Radolf, J., D., Sakamoto, J., M., Sanchez-Gracia, A., Severo, M., S., Silverman, N., Simo, L., Tojo, M., Tornador, C., Van Zee, J., P., Vazquez, J., Vieira, F., G., Villar, M., Wespiser, A., R., Yang, Y., Zhu, J., Arensburger, P., Pietrantonio, P., V., Barker, S., C., Shao, R., Zdobnov, E., M., Hauser, F., Grimmelikhuijzen, C., J., P., Park, Y., Rozas, J., Benton, R., Pedra, J., H., F., Nelson, D., R., Unger, M., F., Tubio, J., M., C., Tu, Z., Robertson, H., M., Shumway, M., Sutton, G., Wortman, J., R., Lawson, D., Wikel, S., K., Nene, V., M., Fraser, C., M., Collins, F., H., Birren, B., Nelson, K., E., Caler, E., Hill, C., A., Ghaffari, N., Sanchez-Flores, A., Doan, R., Garcia-Orozco, K., D., Chen, P., L., Ochoa-Leyva, A., Lopez-Zavala, A., A., Carrasco, J., S., Hong, C., Brieba, L., G., Rudiño-Piñera, E., Blood, P., D., P., Sawyer, J., E., Johnson, C., D., Dindot, S., V., Sotelo-Mundo, R., R., Criscitiello, M., F., Gao, K., Tankovic, A., Zhang, Y., Y., Kusumoto, H., Zhang, J., J., Chen, W., XiangWei, W., Shaulsky, G., H., Hu, C., Traynelis, S., F., Yuan, H., Jiang, Y., Fergus, D., J., Feng, N., Y., Bass, A., H., Fergus, D., J., Bass, A., H., Duncan, R., P., Feng, H., Nguyen, D., M., Wilson, A., C., C., Darris, C., E., Tyus, J., E., Kelley, G., Ropelewski, A., J., Nicholas, H., B., Wang, X., Nahashon, S., Nahashon, S., Couger, M., B., Pipes, L., Squina, F., Boyd, B., M., Allen, J., M., Nguyen, N., Sweet, A., D., Warnow, T., Shapiro, M., D., Villa, S., M., Bush, S., E., Clayton, D., H., Johnson, K., P., Blood, P., D., P., Marcus, S., Schatz, M., C., Bahreini, A., Levine, K., Santana-Santos, L., Benos, P., V., Wang, P., Andersen, C., Oesterreich, S., Lee, A., V., Armstrong, E., J., Stillman, J., H., Arafat, A., Jing, P., Ma, Y., Pu, M., Nan, G., Fang, H., Chen, C., Fei, Y., Almada, A., A., & Tarrant, A., M. BMC genomics, 16(1):1032-1037, Public Library of Science, 2, 2015.

Paper

Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors [link]

Website doi abstract bibtex

In the Gulf of Maine, the copepod Calanus finmarchicus co-occurs with the neurotoxin-producing dinoflagellate, Alexandrium fundyense. The copepod is resistant to this toxic alga, but little is known about other effects. Gene expression profiles were used to investigate the physiological response of females feeding for two and five days on a control diet or a diet containing either a low or a high dose of A. fundyense. The physiological responses to the two experimental diets were similar, but changed between the time points. At 5-days the response was characterized by down-regulated genes involved in energy metabolism. Detoxification was not a major component of the response. Instead, genes involved in digestion were consistently regulated, suggesting that food assimilation may have been affected. Thus, predicted increases in the frequency of blooms of A. fundyense could affect C. finmarchicus populations by changing the individuals’ energy budget and reducing their ability to build lipid reserves.

@article{
title = {Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors},
type = {article},
year = {2015},
keywords = {PY4},
pages = {1032-1037},
volume = {16},
websites = {https://academic.oup.com/femsec/article-lookup/doi/10.1093/femsec/fiw072,https://www.nature.com/articles/srep46227.pdf,http://view.ncbi.nlm.nih.gov/pubmed/28387369,http://www.ncbi.nlm.nih.gov/pubmed/28387369,http://www.pubmedcentral.nih.gov/articlerender.},
month = {2},
publisher = {Public Library of Science},
day = {1},
city = {1752 N St., N.W., Washington, DC},
id = {e4a284de-b35e-3491-8ea5-3dd1746fdce6},
created = {2020-04-29T21:56:59.418Z},
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last_modified = {2020-04-29T21:56:59.682Z},
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source_type = {article},
language = {eng},
country = {England},
patent_owner = {NLM},
private_publication = {false},
abstract = {In the Gulf of Maine, the copepod Calanus finmarchicus co-occurs with the neurotoxin-producing dinoflagellate, Alexandrium fundyense. The copepod is resistant to this toxic alga, but little is known about other effects. Gene expression profiles were used to investigate the physiological response of females feeding for two and five days on a control diet or a diet containing either a low or a high dose of A. fundyense. The physiological responses to the two experimental diets were similar, but changed between the time points. At 5-days the response was characterized by down-regulated genes involved in energy metabolism. Detoxification was not a major component of the response. Instead, genes involved in digestion were consistently regulated, suggesting that food assimilation may have been affected. Thus, predicted increases in the frequency of blooms of A. fundyense could affect C. finmarchicus populations by changing the individuals’ energy budget and reducing their ability to build lipid reserves.},
bibtype = {article},
author = {Zhang, Yujia Yuehua and Kong, Weijing and Gao, Yang and Liu, Xiaoyan and Gao, Kai and Xie, Han and Wu, Ye and Zhang, Yujia Yuehua and Wang, Jingmin and Gao, Feng and Wu, Xiru and Jiang, Yuwu and Youssef, N. H. and Couger, M. Brian and Struchtemeyer, C. G. and Liggenstoffer, A. S. and Prade, R. A. and Najar, F. Z. and Atiyeh, H. K. and Wilkins, M. R. and Elshahed, M. S. and Wu, Zhiqiang and Yang, Li and Ren, Xianwen and He, Guimei and Zhang, Junpeng Jin and Yang, Jian and Qian, Zhaohui and Dong, Jie and Sun, Lilian and Zhu, Yafang and Du, Jiang and Yang, Fan and Zhang, Shuyi and Jin, Qi and Uy, KL and LeDuc, R and Ganote, C and Tarpy, David R and Mattila, Heather R and Newton, ILG Irene L G and Subramanian, Sandeep and Chaparala, Srilakshmi and Avali, Viji and Ganapathiraju, Madhavi K. and Stanton-Geddes, John and Paape, Timothy and Epstein, Brendan and Briskine, Roman and Yoder, Jeremy and Mudge, Joann and Bharti, Arvind K. and Farmer, Andrew D. and Zhou, Peng and Denny, Roxanne and May, Gregory D. and Erlandson, Stephanie and Yakub, Mohammed and Sugawara, Masayuki and Sadowsky, Michael J. and Young, Nevin D. and Tiffin, Peter and Sousounis, Konstantinos and Qi, Feng and Yadav, Manisha C and Millan, Jose Luis and Toyama, Fubito and Chiba, Chikafumi and Eguchi, Yukiko and Eguchi, Goro and Tsonis, Panagiotis A and Roncalli, Vittoria and Cieslak, Matthew C MC and Lenz, PH Petra H and Rokop, Z P and Horton, Melissa A and Newton, ILG Irene L G and Raborn, RT Taylor and Spitze, Ken and Brendel, Volker P VP and Lynch, Michael and Qin, Xiaomei and Huang, Sheng and Liu, Yanqing and Bian, Mingdi and Shi, Wuliang and Zuo, Zecheng and Yang, Zhenming and Pipes, Lenore and Li, Sheng and Bozinoski, Marjan and Palermo, Robert E. and Peng, Xinxia and Blood, Philip D. Phillip and Kelly, Sara and Weiss, Jeffrey M. and Thierry-Mieg, Jean and Thierry-Mieg, Danielle and Zumbo, Paul and Chen, Ronghua and Schroth, Gary P. and Mason, Christopher E. and Katze, Michael G. and Phuong, Mark Anthony and Mahardika, Gusti N and Peterson, M and Malloy, J and Buonaccorsi, V and Marden, J and Petersen, Isaac T. and Bates, John E. and Dodge, Kenneth A. and Lansford, Jennifer E. and Pettit, Gregory S. and Peng, Xinxia and Pipes, Lenore and Xiong, Hao and Green, Richard R. and Jones, Daniel C. and Ruzzo, Walter L. and Schroth, Gary P. and Mason, Christopher E. and Palermo, Robert E. and Katze, Michael G. and Orsini, Luisa and Gilbert, Donald and Podicheti, Ram and Jansen, Mieke and Brown, James B and Solari, Omid Shams and Spanier, Katina I and Colbourne, John K and Rush, Douglas and Decaestecker, Ellen and Asselman, Jana and De Schamphelaere, Karel A C and Ebert, Dieter and Haag, Christoph R and Kvist, Jouni and Laforsch, Christian and Petrusek, Adam and Beckerman, Andrew P and Little, Tom J and Chaturvedi, Anurag and Pfrender, Michael E and De Meester, Luc and Frilander, Mikko J and Newton, ILG Irene L G and Sheehan, KB Kathy B and Motamayor, Juan C and Mockaitis, Keithanne and Schmutz, Jeremy and Haiminen, Niina and III, Donald Livingstone and Cornejo, Omar and Findley, Seth D and Zheng, Ping and Utro, Filippo and Royaert, Stefan and Saski, Christopher and Jenkins, Jerry and Podicheti, Ram and Zhao, Meixia and Scheffler, Brian E and Stack, Joseph C and Feltus, Frank A and Mustiga, Guiliana M and Amores, Freddy and Phillips, Wilbert and Marelli, Jean Philippe and May, Gregory D. and Shapiro, Howard and Ma, Jianxin and Bustamante, Carlos D and Schnell, Raymond J and Main, Dorrie and Gilbert, Donald and Parida, Laxmi and Kuhn, DN David N and McGrath, Casey L. CL and Gout, Jean-Francois JF and Johri, P and Doak, Thomas G. TG and Yanagi, Akira and Lynch, Michael and Martínez, Teresa and Ropelewski, Alexander J and González-Mendez, Ricardo and Vázquez, Guillermo J and Robledo, Iraida E. and Martinez, Teresa and Aquino, Edna E. and Robledo, Iraida E. and Martinez, Idali and Vazquez, Guillermo J. and Aquino, Edna E. and Robledo, Iraida E. and Lipovich, Leonard and Hou, Zhuo-Cheng and Jia, Hui and Sinkler, Christopher and McGowen, Michael and Sterner, Kirstin N. and Weckle, Amy and Sugalski, Amara B. and Pipes, Lenore and Gatti, Domenico L. and Mason, Christopher E. and Sherwood, Chet C. and Hof, Patrick R. and Kuzawa, Christopher W. and Grossman, Lawrence I. and Goodman, Morris and Wildman, Derek E. and Kuhn, DN David N and Dillon, NL and Innes, DJ and Wu, LS and Krishnakumar, Raga and Chen, Amy F and Pantovich, Marisol G and Danial, Muhammad and Parchem, Ronald J and Labosky, Patricia A and Blelloch, Robert and Jin, M and Bothfeld, W and Austin, S and Sato, TK and Reau, A La and Huth, Troy J and Place, Sean P and Horton, Melissa A and Oliver, Randy and Newton, ILG Irene L G and Gulia-Nuss, Monika and Nuss, Andrew B and Meyer, Jason M and Sonenshine, Daniel E and Roe, R Michael and Waterhouse, Robert M and Sattelle, David B and de la Fuente, Jose and Ribeiro, Jose M and Megy, Karine and Thimmapuram, Jyothi and Miller, Jason R and Walenz, Brian P and Koren, Sergey and Hostetler, Jessica B and Thiagarajan, Mathangi and Joardar, Vinita S and Hannick, Linda I and Bidwell, Shelby and Hammond, Martin P and Young, Sarah and Zeng, Qiandong and Abrudan, Jenica L and Almeida, Francisca C and Ayllon, Nieves and Bhide, Ketaki and Bissinger, Brooke W and Bonzon-Kulichenko, Elena and Buckingham, Steven D and Caffrey, Daniel R and Caimano, Melissa J and Croset, Vincent and Driscoll, Timothy and Gilbert, Donald and Gillespie, Joseph J and Giraldo-Calderon, Gloria I and Grabowski, Jeffrey M and Jiang, David and Khalil, Sayed M S and Kim, Donghun and Kocan, Katherine M and Koci, Juraj and Kuhn, Richard J and Kurtti, Timothy J and Lees, Kristin and Lang, Emma G and Kennedy, Ryan C and Kwon, Hyeogsun and Perera, Rushika and Qi, Yumin and Radolf, Justin D and Sakamoto, Joyce M and Sanchez-Gracia, Alejandro and Severo, Maiara S and Silverman, Neal and Simo, Ladislav and Tojo, Marta and Tornador, Cristian and Van Zee, Janice P and Vazquez, Jesus and Vieira, Filipe G and Villar, Margarita and Wespiser, Adam R and Yang, Yunlong and Zhu, Jiwei and Arensburger, Peter and Pietrantonio, Patricia V and Barker, Stephen C and Shao, Renfu and Zdobnov, Evgeny M and Hauser, Frank and Grimmelikhuijzen, Cornelis J P and Park, Yoonseong and Rozas, Julio and Benton, Richard and Pedra, Joao H F and Nelson, David R and Unger, Maria F and Tubio, Jose M C and Tu, Zhijian and Robertson, Hugh M and Shumway, Martin and Sutton, Granger and Wortman, Jennifer R and Lawson, Daniel and Wikel, Stephen K and Nene, Vishvanath M and Fraser, Claire M and Collins, Frank H and Birren, Bruce and Nelson, Karen E and Caler, Elisabet and Hill, Catherine A and Ghaffari, Noushin and Sanchez-Flores, Alejandro and Doan, Ryan and Garcia-Orozco, Karina D. and Chen, Patricia L. and Ochoa-Leyva, Adrian and Lopez-Zavala, Alonso A. and Carrasco, J. Salvador and Hong, Chris and Brieba, Luis G. and Rudiño-Piñera, Enrique and Blood, Philip D. Phillip and Sawyer, Jason E. and Johnson, Charles D. and Dindot, Scott V. and Sotelo-Mundo, Rogerio R. and Criscitiello, Michael F. and Gao, Kai and Tankovic, Anel and Zhang, Yujia Yuehua and Kusumoto, Hirofumi and Zhang, Junpeng Jin and Chen, Wenjuan and XiangWei, Wenshu and Shaulsky, Gil H. and Hu, Chun and Traynelis, Stephen F. and Yuan, Hongjie and Jiang, Yuwu and Fergus, Daniel J and Feng, Ni Y and Bass, Andrew H and Fergus, Daniel J and Bass, Andrew H and Duncan, Rebecca P and Feng, Honglin and Nguyen, Douglas M and Wilson, Alex C C and Darris, Carl E and Tyus, James E and Kelley, Gary and Ropelewski, Alexander J and Nicholas, Hugh B and Wang, Xiaofei and Nahashon, Samuel and Nahashon, Samuel and Couger, M. Brian and Pipes, Lenore and Squina, F and Boyd, Bret M. and Allen, Julie M. and Nguyen, Nam and Sweet, Andrew D. and Warnow, Tandy and Shapiro, Michael D. and Villa, Scott M. and Bush, Sarah E. and Clayton, Dale H. and Johnson, Kevin P. and Blood, Philip D. Phillip and Marcus, Shoshana and Schatz, Michael C. and Bahreini, Amir and Levine, Kevin and Santana-Santos, Lucas and Benos, Panayiotis V. and Wang, Peilu and Andersen, Courtney and Oesterreich, Steffi and Lee, Adrian V. and Armstrong, Eric J. and Stillman, Jonathon H. and Arafat, Ahmed and Jing, Peng and Ma, Yuping and Pu, Miao and Nan, Gai and Fang, He and Chen, Chen and Fei, Yin and Almada, Amalia A. and Tarrant, Ann M.},
editor = {Mothet, Jean-Pierre},
doi = {10.1002/cne.23843},
journal = {BMC genomics},
number = {1}
}

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stressors","type":"article","year":"2015","keywords":"PY4","pages":"1032-1037","volume":"16","websites":"https://academic.oup.com/femsec/article-lookup/doi/10.1093/femsec/fiw072,https://www.nature.com/articles/srep46227.pdf,http://view.ncbi.nlm.nih.gov/pubmed/28387369,http://www.ncbi.nlm.nih.gov/pubmed/28387369,http://www.pubmedcentral.nih.gov/articlerender.","month":"2","publisher":"Public Library of Science","day":"1","city":"1752 N St., N.W., Washington, DC","id":"e4a284de-b35e-3491-8ea5-3dd1746fdce6","created":"2020-04-29T21:56:59.418Z","accessed":"2017-05-12","file_attached":"true","profile_id":"5db6d3e7-562f-3ec2-a249-16ecf1e747e4","group_id":"e69a8af9-b9f0-3719-92d7-c9e03d79c259","last_modified":"2020-04-29T21:56:59.682Z","read":false,"starred":false,"authored":false,"confirmed":"true","hidden":false,"citation_key":"citeulike:14366768","source_type":"article","language":"eng","country":"England","patent_owner":"NLM","private_publication":false,"abstract":"In the Gulf of Maine, the copepod Calanus finmarchicus co-occurs with the neurotoxin-producing dinoflagellate, Alexandrium fundyense. The copepod is resistant to this toxic alga, but little is known about other effects. Gene expression profiles were used to investigate the physiological response of females feeding for two and five days on a control diet or a diet containing either a low or a high dose of A. fundyense. The physiological responses to the two experimental diets were similar, but changed between the time points. At 5-days the response was characterized by down-regulated genes involved in energy metabolism. Detoxification was not a major component of the response. Instead, genes involved in digestion were consistently regulated, suggesting that food assimilation may have been affected. Thus, predicted increases in the frequency of blooms of A. fundyense could affect C. finmarchicus populations by changing the individuals’ energy budget and reducing their ability to build lipid reserves.","bibtype":"article","author":"Zhang, Yujia Yuehua and Kong, Weijing and Gao, Yang and Liu, Xiaoyan and Gao, Kai and Xie, Han and Wu, Ye and Zhang, Yujia Yuehua and Wang, Jingmin and Gao, Feng and Wu, Xiru and Jiang, Yuwu and Youssef, N. H. and Couger, M. Brian and Struchtemeyer, C. G. and Liggenstoffer, A. S. and Prade, R. A. and Najar, F. Z. and Atiyeh, H. K. and Wilkins, M. R. and Elshahed, M. S. and Wu, Zhiqiang and Yang, Li and Ren, Xianwen and He, Guimei and Zhang, Junpeng Jin and Yang, Jian and Qian, Zhaohui and Dong, Jie and Sun, Lilian and Zhu, Yafang and Du, Jiang and Yang, Fan and Zhang, Shuyi and Jin, Qi and Uy, KL and LeDuc, R and Ganote, C and Tarpy, David R and Mattila, Heather R and Newton, ILG Irene L G and Subramanian, Sandeep and Chaparala, Srilakshmi and Avali, Viji and Ganapathiraju, Madhavi K. and Stanton-Geddes, John and Paape, Timothy and Epstein, Brendan and Briskine, Roman and Yoder, Jeremy and Mudge, Joann and Bharti, Arvind K. and Farmer, Andrew D. and Zhou, Peng and Denny, Roxanne and May, Gregory D. and Erlandson, Stephanie and Yakub, Mohammed and Sugawara, Masayuki and Sadowsky, Michael J. and Young, Nevin D. and Tiffin, Peter and Sousounis, Konstantinos and Qi, Feng and Yadav, Manisha C and Millan, Jose Luis and Toyama, Fubito and Chiba, Chikafumi and Eguchi, Yukiko and Eguchi, Goro and Tsonis, Panagiotis A and Roncalli, Vittoria and Cieslak, Matthew C MC and Lenz, PH Petra H and Rokop, Z P and Horton, Melissa A and Newton, ILG Irene L G and Raborn, RT Taylor and Spitze, Ken and Brendel, Volker P VP and Lynch, Michael and Qin, Xiaomei and Huang, Sheng and Liu, Yanqing and Bian, Mingdi and Shi, Wuliang and Zuo, Zecheng and Yang, Zhenming and Pipes, Lenore and Li, Sheng and Bozinoski, Marjan and Palermo, Robert E. and Peng, Xinxia and Blood, Philip D. Phillip and Kelly, Sara and Weiss, Jeffrey M. and Thierry-Mieg, Jean and Thierry-Mieg, Danielle and Zumbo, Paul and Chen, Ronghua and Schroth, Gary P. and Mason, Christopher E. and Katze, Michael G. and Phuong, Mark Anthony and Mahardika, Gusti N and Peterson, M and Malloy, J and Buonaccorsi, V and Marden, J and Petersen, Isaac T. and Bates, John E. and Dodge, Kenneth A. and Lansford, Jennifer E. and Pettit, Gregory S. and Peng, Xinxia and Pipes, Lenore and Xiong, Hao and Green, Richard R. and Jones, Daniel C. and Ruzzo, Walter L. and Schroth, Gary P. and Mason, Christopher E. and Palermo, Robert E. and Katze, Michael G. and Orsini, Luisa and Gilbert, Donald and Podicheti, Ram and Jansen, Mieke and Brown, James B and Solari, Omid Shams and Spanier, Katina I and Colbourne, John K and Rush, Douglas and Decaestecker, Ellen and Asselman, Jana and De Schamphelaere, Karel A C and Ebert, Dieter and Haag, Christoph R and Kvist, Jouni and Laforsch, Christian and Petrusek, Adam and Beckerman, Andrew P and Little, Tom J and Chaturvedi, Anurag and Pfrender, Michael E and De Meester, Luc and Frilander, Mikko J and Newton, ILG Irene L G and Sheehan, KB Kathy B and Motamayor, Juan C and Mockaitis, Keithanne and Schmutz, Jeremy and Haiminen, Niina and III, Donald Livingstone and Cornejo, Omar and Findley, Seth D and Zheng, Ping and Utro, Filippo and Royaert, Stefan and Saski, Christopher and Jenkins, Jerry and Podicheti, Ram and Zhao, Meixia and Scheffler, Brian E and Stack, Joseph C and Feltus, Frank A and Mustiga, Guiliana M and Amores, Freddy and Phillips, Wilbert and Marelli, Jean Philippe and May, Gregory D. and Shapiro, Howard and Ma, Jianxin and Bustamante, Carlos D and Schnell, Raymond J and Main, Dorrie and Gilbert, Donald and Parida, Laxmi and Kuhn, DN David N and McGrath, Casey L. CL and Gout, Jean-Francois JF and Johri, P and Doak, Thomas G. TG and Yanagi, Akira and Lynch, Michael and Martínez, Teresa and Ropelewski, Alexander J and González-Mendez, Ricardo and Vázquez, Guillermo J and Robledo, Iraida E. and Martinez, Teresa and Aquino, Edna E. and Robledo, Iraida E. and Martinez, Idali and Vazquez, Guillermo J. and Aquino, Edna E. and Robledo, Iraida E. and Lipovich, Leonard and Hou, Zhuo-Cheng and Jia, Hui and Sinkler, Christopher and McGowen, Michael and Sterner, Kirstin N. and Weckle, Amy and Sugalski, Amara B. and Pipes, Lenore and Gatti, Domenico L. and Mason, Christopher E. and Sherwood, Chet C. and Hof, Patrick R. and Kuzawa, Christopher W. and Grossman, Lawrence I. and Goodman, Morris and Wildman, Derek E. and Kuhn, DN David N and Dillon, NL and Innes, DJ and Wu, LS and Krishnakumar, Raga and Chen, Amy F and Pantovich, Marisol G and Danial, Muhammad and Parchem, Ronald J and Labosky, Patricia A and Blelloch, Robert and Jin, M and Bothfeld, W and Austin, S and Sato, TK and Reau, A La and Huth, Troy J and Place, Sean P and Horton, Melissa A and Oliver, Randy and Newton, ILG Irene L G and Gulia-Nuss, Monika and Nuss, Andrew B and Meyer, Jason M and Sonenshine, Daniel E and Roe, R Michael and Waterhouse, Robert M and Sattelle, David B and de la Fuente, Jose and Ribeiro, Jose M and Megy, Karine and Thimmapuram, Jyothi and Miller, Jason R and Walenz, Brian P and Koren, Sergey and Hostetler, Jessica B and Thiagarajan, Mathangi and Joardar, Vinita S and Hannick, Linda I and Bidwell, Shelby and Hammond, Martin P and Young, Sarah and Zeng, Qiandong and Abrudan, Jenica L and Almeida, Francisca C and Ayllon, Nieves and Bhide, Ketaki and Bissinger, Brooke W and Bonzon-Kulichenko, Elena and Buckingham, Steven D and Caffrey, Daniel R and Caimano, Melissa J and Croset, Vincent and Driscoll, Timothy and Gilbert, Donald and Gillespie, Joseph J and Giraldo-Calderon, Gloria I and Grabowski, Jeffrey M and Jiang, David and Khalil, Sayed M S and Kim, Donghun and Kocan, Katherine M and Koci, Juraj and Kuhn, Richard J and Kurtti, Timothy J and Lees, Kristin and Lang, Emma G and Kennedy, Ryan C and Kwon, Hyeogsun and Perera, Rushika and Qi, Yumin and Radolf, Justin D and Sakamoto, Joyce M and Sanchez-Gracia, Alejandro and Severo, Maiara S and Silverman, Neal and Simo, Ladislav and Tojo, Marta and Tornador, Cristian and Van Zee, Janice P and Vazquez, Jesus and Vieira, Filipe G and Villar, Margarita and Wespiser, Adam R and Yang, Yunlong and Zhu, Jiwei and Arensburger, Peter and Pietrantonio, Patricia V and Barker, Stephen C and Shao, Renfu and Zdobnov, Evgeny M and Hauser, Frank and Grimmelikhuijzen, Cornelis J P and Park, Yoonseong and Rozas, Julio and Benton, Richard and Pedra, Joao H F and Nelson, David R and Unger, Maria F and Tubio, Jose M C and Tu, Zhijian and Robertson, Hugh M and Shumway, Martin and Sutton, Granger and Wortman, Jennifer R and Lawson, Daniel and Wikel, Stephen K and Nene, Vishvanath M and Fraser, Claire M and Collins, Frank H and Birren, Bruce and Nelson, Karen E and Caler, Elisabet and Hill, Catherine A and Ghaffari, Noushin and Sanchez-Flores, Alejandro and Doan, Ryan and Garcia-Orozco, Karina D. and Chen, Patricia L. and Ochoa-Leyva, Adrian and Lopez-Zavala, Alonso A. and Carrasco, J. Salvador and Hong, Chris and Brieba, Luis G. and Rudiño-Piñera, Enrique and Blood, Philip D. Phillip and Sawyer, Jason E. and Johnson, Charles D. and Dindot, Scott V. and Sotelo-Mundo, Rogerio R. and Criscitiello, Michael F. and Gao, Kai and Tankovic, Anel and Zhang, Yujia Yuehua and Kusumoto, Hirofumi and Zhang, Junpeng Jin and Chen, Wenjuan and XiangWei, Wenshu and Shaulsky, Gil H. and Hu, Chun and Traynelis, Stephen F. and Yuan, Hongjie and Jiang, Yuwu and Fergus, Daniel J and Feng, Ni Y and Bass, Andrew H and Fergus, Daniel J and Bass, Andrew H and Duncan, Rebecca P and Feng, Honglin and Nguyen, Douglas M and Wilson, Alex C C and Darris, Carl E and Tyus, James E and Kelley, Gary and Ropelewski, Alexander J and Nicholas, Hugh B and Wang, Xiaofei and Nahashon, Samuel and Nahashon, Samuel and Couger, M. Brian and Pipes, Lenore and Squina, F and Boyd, Bret M. and Allen, Julie M. and Nguyen, Nam and Sweet, Andrew D. and Warnow, Tandy and Shapiro, Michael D. and Villa, Scott M. and Bush, Sarah E. and Clayton, Dale H. and Johnson, Kevin P. and Blood, Philip D. Phillip and Marcus, Shoshana and Schatz, Michael C. and Bahreini, Amir and Levine, Kevin and Santana-Santos, Lucas and Benos, Panayiotis V. and Wang, Peilu and Andersen, Courtney and Oesterreich, Steffi and Lee, Adrian V. and Armstrong, Eric J. and Stillman, Jonathon H. and Arafat, Ahmed and Jing, Peng and Ma, Yuping and Pu, Miao and Nan, Gai and Fang, He and Chen, Chen and Fei, Yin and Almada, Amalia A. and Tarrant, Ann M.","editor":"Mothet, Jean-Pierre","doi":"10.1002/cne.23843","journal":"BMC genomics","number":"1","bibtex":"@article{\n title = {Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors},\n type = {article},\n year = {2015},\n keywords = {PY4},\n pages = {1032-1037},\n volume = {16},\n websites = {https://academic.oup.com/femsec/article-lookup/doi/10.1093/femsec/fiw072,https://www.nature.com/articles/srep46227.pdf,http://view.ncbi.nlm.nih.gov/pubmed/28387369,http://www.ncbi.nlm.nih.gov/pubmed/28387369,http://www.pubmedcentral.nih.gov/articlerender.},\n month = {2},\n publisher = {Public Library of Science},\n day = {1},\n city = {1752 N St., N.W., Washington, DC},\n id = {e4a284de-b35e-3491-8ea5-3dd1746fdce6},\n created = {2020-04-29T21:56:59.418Z},\n accessed = {2017-05-12},\n file_attached = {true},\n profile_id = {5db6d3e7-562f-3ec2-a249-16ecf1e747e4},\n group_id = {e69a8af9-b9f0-3719-92d7-c9e03d79c259},\n last_modified = {2020-04-29T21:56:59.682Z},\n read = {false},\n starred = {false},\n authored = {false},\n confirmed = {true},\n hidden = {false},\n citation_key = {citeulike:14366768},\n source_type = {article},\n language = {eng},\n country = {England},\n patent_owner = {NLM},\n private_publication = {false},\n abstract = {In the Gulf of Maine, the copepod Calanus finmarchicus co-occurs with the neurotoxin-producing dinoflagellate, Alexandrium fundyense. The copepod is resistant to this toxic alga, but little is known about other effects. Gene expression profiles were used to investigate the physiological response of females feeding for two and five days on a control diet or a diet containing either a low or a high dose of A. fundyense. The physiological responses to the two experimental diets were similar, but changed between the time points. At 5-days the response was characterized by down-regulated genes involved in energy metabolism. Detoxification was not a major component of the response. Instead, genes involved in digestion were consistently regulated, suggesting that food assimilation may have been affected. Thus, predicted increases in the frequency of blooms of A. fundyense could affect C. finmarchicus populations by changing the individuals’ energy budget and reducing their ability to build lipid reserves.},\n bibtype = {article},\n author = {Zhang, Yujia Yuehua and Kong, Weijing and Gao, Yang and Liu, Xiaoyan and Gao, Kai and Xie, Han and Wu, Ye and Zhang, Yujia Yuehua and Wang, Jingmin and Gao, Feng and Wu, Xiru and Jiang, Yuwu and Youssef, N. H. and Couger, M. Brian and Struchtemeyer, C. G. and Liggenstoffer, A. S. and Prade, R. A. and Najar, F. Z. and Atiyeh, H. K. and Wilkins, M. R. and Elshahed, M. S. and Wu, Zhiqiang and Yang, Li and Ren, Xianwen and He, Guimei and Zhang, Junpeng Jin and Yang, Jian and Qian, Zhaohui and Dong, Jie and Sun, Lilian and Zhu, Yafang and Du, Jiang and Yang, Fan and Zhang, Shuyi and Jin, Qi and Uy, KL and LeDuc, R and Ganote, C and Tarpy, David R and Mattila, Heather R and Newton, ILG Irene L G and Subramanian, Sandeep and Chaparala, Srilakshmi and Avali, Viji and Ganapathiraju, Madhavi K. and Stanton-Geddes, John and Paape, Timothy and Epstein, Brendan and Briskine, Roman and Yoder, Jeremy and Mudge, Joann and Bharti, Arvind K. and Farmer, Andrew D. and Zhou, Peng and Denny, Roxanne and May, Gregory D. and Erlandson, Stephanie and Yakub, Mohammed and Sugawara, Masayuki and Sadowsky, Michael J. and Young, Nevin D. and Tiffin, Peter and Sousounis, Konstantinos and Qi, Feng and Yadav, Manisha C and Millan, Jose Luis and Toyama, Fubito and Chiba, Chikafumi and Eguchi, Yukiko and Eguchi, Goro and Tsonis, Panagiotis A and Roncalli, Vittoria and Cieslak, Matthew C MC and Lenz, PH Petra H and Rokop, Z P and Horton, Melissa A and Newton, ILG Irene L G and Raborn, RT Taylor and Spitze, Ken and Brendel, Volker P VP and Lynch, Michael and Qin, Xiaomei and Huang, Sheng and Liu, Yanqing and Bian, Mingdi and Shi, Wuliang and Zuo, Zecheng and Yang, Zhenming and Pipes, Lenore and Li, Sheng and Bozinoski, Marjan and Palermo, Robert E. and Peng, Xinxia and Blood, Philip D. 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Salvador and Hong, Chris and Brieba, Luis G. and Rudiño-Piñera, Enrique and Blood, Philip D. Phillip and Sawyer, Jason E. and Johnson, Charles D. and Dindot, Scott V. and Sotelo-Mundo, Rogerio R. and Criscitiello, Michael F. and Gao, Kai and Tankovic, Anel and Zhang, Yujia Yuehua and Kusumoto, Hirofumi and Zhang, Junpeng Jin and Chen, Wenjuan and XiangWei, Wenshu and Shaulsky, Gil H. and Hu, Chun and Traynelis, Stephen F. and Yuan, Hongjie and Jiang, Yuwu and Fergus, Daniel J and Feng, Ni Y and Bass, Andrew H and Fergus, Daniel J and Bass, Andrew H and Duncan, Rebecca P and Feng, Honglin and Nguyen, Douglas M and Wilson, Alex C C and Darris, Carl E and Tyus, James E and Kelley, Gary and Ropelewski, Alexander J and Nicholas, Hugh B and Wang, Xiaofei and Nahashon, Samuel and Nahashon, Samuel and Couger, M. Brian and Pipes, Lenore and Squina, F and Boyd, Bret M. and Allen, Julie M. and Nguyen, Nam and Sweet, Andrew D. and Warnow, Tandy and Shapiro, Michael D. and Villa, Scott M. and Bush, Sarah E. and Clayton, Dale H. and Johnson, Kevin P. and Blood, Philip D. 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