@article{ zheng-etal-gm15,
  title = {Use of Semantic Workflows to Enhance Transparency and Reproducibility in Clinical Omics},
  author = {Christina L Zheng and Varun Ratnakar and Yolanda Gil and Shannon K McWeeney},
  journal = {Genome Medicine},
  volume = {7},
  number = {73},
  year = {2015},
  doi = {10.1186/s13073-015-0202-y},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/zheng-etal-gm15.pdf },
  ee = {http://dx.doi.org/10.1186/s13073-015-0202-y}
}

{"_id":"nLyD8knfWSRK6kKRn","bibbaseid":"zheng-ratnakar-gil-mcweeney-useofsemanticworkflowstoenhancetransparencyandreproducibilityinclinicalomics-2015","downloads":53,"creationDate":"2015-07-29T00:02:53.493Z","title":"Use of Semantic Workflows to Enhance Transparency and Reproducibility in Clinical Omics","author_short":["Zheng, C. L","Ratnakar, V.","Gil, Y.","McWeeney, S. K"],"year":2015,"bibtype":"article","biburl":"https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/publications.bib","bibdata":{"bibtype":"article","type":"article","title":"Use of Semantic Workflows to Enhance Transparency and Reproducibility in Clinical Omics","author":[{"firstnames":["Christina","L"],"propositions":[],"lastnames":["Zheng"],"suffixes":[]},{"firstnames":["Varun"],"propositions":[],"lastnames":["Ratnakar"],"suffixes":[]},{"firstnames":["Yolanda"],"propositions":[],"lastnames":["Gil"],"suffixes":[]},{"firstnames":["Shannon","K"],"propositions":[],"lastnames":["McWeeney"],"suffixes":[]}],"journal":"Genome Medicine","volume":"7","number":"73","year":"2015","doi":"10.1186/s13073-015-0202-y","url":"https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/zheng-etal-gm15.pdf ","ee":"http://dx.doi.org/10.1186/s13073-015-0202-y","bibtex":"@article{ zheng-etal-gm15,\n title = {Use of Semantic Workflows to Enhance Transparency and Reproducibility in Clinical Omics},\n author = {Christina L Zheng and Varun Ratnakar and Yolanda Gil and Shannon K McWeeney},\n journal = {Genome Medicine},\n volume = {7},\n number = {73},\n year = {2015},\n doi = {10.1186/s13073-015-0202-y},\n url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/zheng-etal-gm15.pdf },\n ee = {http://dx.doi.org/10.1186/s13073-015-0202-y}\n}\n\n","author_short":["Zheng, C. L","Ratnakar, V.","Gil, Y.","McWeeney, S. K"],"key":"zheng-etal-gm15","id":"zheng-etal-gm15","bibbaseid":"zheng-ratnakar-gil-mcweeney-useofsemanticworkflowstoenhancetransparencyandreproducibilityinclinicalomics-2015","role":"author","urls":{"Paper":"https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/zheng-etal-gm15.pdf ","Link":"http://dx.doi.org/10.1186/s13073-015-0202-y"},"metadata":{"authorlinks":{"gil, y":"https://usc-isi-i2.github.io/dsbox/"}},"downloads":53},"search_terms":["use","semantic","workflows","enhance","transparency","reproducibility","clinical","omics","zheng","ratnakar","gil","mcweeney"],"keywords":[],"authorIDs":["27cMFDKKz3cF2v9Dq","2XC9uyewuSQq7tWXZ","2bc5twBHgARDcLKZg","2jdGFd52nZtw6Ju8k","2nfzsApT7eyhJTCQ9","34TcywEqZfe4ojQwg","3BLS72psw7wayjbW5","3Dq8xwMY3hPfCupDZ","3cK5krinLSFkcih4f","3m8Lo4aY4DYCa8Gzz","3rsobBwaEbL5xyQzW","3xxNXPcS8i9F7r32k","43ewZ7BTLyob4trLH","4DK4xTkWXBjYLnaqd","4aY4Z3Gf2Qvp4Sp9o","4eMvRHFHydpLxrpRc","4kRX4SppoFYrRip5q","4q9onLgYqRvjLJCkN","4quwh47aydJd92B8S","5456e1c68b01c81930000021","55mLoqnWKTdG9t338","5McfbCFXKFNvXiM7e","5ScZvquTZ8624FsMq","5Zx8bgtwLL2ho7fot","5de70e9345c10edf010002fe","5de8248d4e3c5af3010000fe","5de94215b8c3f8de01000136","5de9951a59feb7f2010000df","5dec73c9dea90ade010000cd","5ded8f805fefb3de010000eb","5dedbacbe47c43de0100005f","5dee1179584fb4df010000f9","5df0d61796fa76de01000112","5df40415d1756cdf010000bb","5df41b589d2522de01000081","5df45cacb126eade010000bd","5df46025b126eade010000e2","5df46b2c95416ade01000049","5df4e0a0fc47dbde0100007e","5df4e9e6fc47dbde010000cf","5df6367238e915de0100009e","5df70d79d581f5df01000047","5df748a7182af9de0100007f","5df7b7a092a8e4df01000067","5df84a89a0ca62df010000b8","5df8693ab99bcff30100008c","5df89ff410b1d1de010000a5","5df94437ccc001de0100009c","5dfb3d2ae04f92df01000063","5dfbc2684705b7de01000009","5dfc0a6ab371afde010000b0","5dfe50c6bfbabdde01000032","5e017485219bd5df010000b2","5e01d2761ca64ddf01000041","5e0284e38508cdde01000084","5e02cfc0410ebcdf0100001d","5e0328f3a1630edf0100003c","5e065afc7da1d1de01000176","5e081b54973979df01000041","5e08310df26b53de01000010","5e085ce91e4bbbdf0100009b","5e09ab902203dedf010000b1","5e0d08569ecb35de01000025","5e0e4054d2eb5bdf01000079","5e0e80d7a0f484df010000c7","5e0f3c792c4a31df01000073","5e0f861699975cde01000173","5e10747b71c264df01000065","5e1095a8bb9e04df0100009b","5e10d9b60192c6df010000fc","5e119b8891bc7ade01000117","5e11e3d93e1c29de0100006d","5e120fa0440202de01000001","5e129b24551229df010000df","5e12ea0d7be933de01000099","5e130837b3bc8bde01000118","5e134d68697554de01000098","5e139117a212e1de01000147","5e14286c12768ef301000010","5e15019bb46f1bdf0100014b","5e160d5ef67f7dde010002bd","5e166198505a61df010003d5","5e16d03dce54f2df0100005d","5e187f0567b9ebde0100010e","5e18ad30bd0cf5de01000052","5e18c5a8d06bffde0100001d","5e1929f5eaca22df01000035","5e19e45bc1012bde0100003c","5e19fe33cde53bde01000031","5e1a127acde53bde01000125","5e1aea5f5f3d2cdf010000ff","5e1c08cdbadffbde010000d0","5e1d6d3c316c3bdf01000082","5e1d903d3a6d8cde01000180","5e1e1423f6dca7f2010000cb","5e1e46cd2e41a7de01000045","5e1e4baf2e41a7de01000082","5e1ef59e147729df0100008c","5e1f401d9ddd0fde01000027","5e1f489a9ddd0fde010000d2","5e1f54dc9ddd0fde010001fb","5e1f778508195af301000003","5e229785a9b15cde01000078","5e23bf9a79cb6df2010000b2","5e25024b2e79a1f201000068","5e2667e0581147f201000038","5e26860cd297d6de0100003a","5e26d6b342065ede0100003a","5e2753aa18178ede01000109","5e280a6cf860fcde0100000f","5e29b88cedf563df010000da","5e29fa4e8fb0e6de010001b0","5e2b0706df8a5dde0100005a","5e2e3566185844df01000041","5e2eb5cab84405df0100018b","5e2f554d26e5cadf0100013a","5e2fd0a5e075a2df010000f2","5e3022e57e0df1de01000155","5e31999e6be690de0100002a","5e31a90b6be690de0100015f","5e33c0a07bf3ecde010000c2","5e33cdddddfebcde0100002a","5e33e769d41331de0100000c","5e341366ce4ca1de010000e0","5e341c61ce4ca1de01000176","5e34336741f782de0100015e","5e34803efae8b9de01000107","5e365f344b25bbf20100009b","5e388656030bcadf01000030","5e38a322645ed2de01000049","5e38b5cd645ed2de01000157","5e3905dddc5b8ade010000d9","5e39a8efad94f9de010000ce","5e3b6b9059b923df010000d0","5e3cc1b5948886de010000a8","5e3d930df33211df01000014","5e3e4289018e1dde01000031","5e3f9e6fcecf86de01000197","5e400f6d17f17dde010000dc","5e4015fd17f17dde01000258","5e40e254fd6934df0100004e","5e415456a59dc8df01000099","5e416d2bd9f47bee01000058","5e42bbb5e7fe39df01000015","5e435315a37866de01000075","5e437af4b5e412df0100011a","5e43a1bfa3f5a4de01000047","5e443c91e5a34dde010001ab","5e447665084293df0100015c","5e457a1d86f11cdf01000001","5e45867b86f11cdf010000e8","5e46568e6a7198de0100011a","5e4716fda2783dde01000149","5e4771a245a735de010000e6","5e4792ae839cb4df01000017","5e47ee0e385298df01000042","5e4823fd08d3f9de01000043","5e48e487435326df01000019","5e4aa00ab70966df0100024f","5e4bddea8f0677df01000035","5e4c206b2dc400de01000168","5e4e9f3064b624de0100005e","5e4fe7c9ea0ccade01000121","5e4ff2a4f5b214df01000096","5e500ec5933046de01000082","5e5052c2c708b1de010000fb","5e51024e9f7a6dde010000bf","5e5105be97f7cdde01000026","5e5122e8fe63cfde0100001f","5e519a102793ecde01000080","5e5219bcbba759e8010000ab","5e53ea13d26e87df010000a2","5e555120e89e5fde0100003e","5e560a65819fabdf010000b2","5e5676e3df3460df0100010a","5e592b24e60e02de01000067","5e594f1df5822adf010000e3","5e5c1d7a15d8f5de01000012","5e5d0776342171f3010000a3","5e5ed1de8c261adf0100010d","5e5f0f636ee7bddf0100011d","5e5f7c035766d9df01000144","5e5fe7c45241b5de0100010d","5e5ff86b13e3aede0100002b","5e609c351fc211de0100011f","5e60e83c839e59df010000ee","5e62e6493ba99bdf01000115","5e64078e77f885df01000024","5e64bc82a8ac14df01000095","5e66773e152d6bde0100009d","5e677c8d10be53de010000cf","5e67c52b697cebdf0100011a","5e67d9f3697cebdf010004c1","5e67e8da0e29d3de01000165","5e68a75978b561de01000092","5e690e808457bade0100045c","5e69801fae9c71de010006d7","5qhsaP5mWFZ6gBS3Q","63Ew4hTq5MAH6p57e","63tQjenmZsbzhjr4r","6MdX6QctjiZbT5cki","6YJvxovSeAnNN9RSi","6yHwyqeqpjuqTq6C8","7ESt9EuE3N8YEfq8E","7bJcnwFXreAo9mzgR","7jgoaj9bQR3xzr6r5","7oLwKu8ydGnvvoJiB","7qcJpxF459yTa2JyS","7xtBGttPFdh9yn33g","82iPqoTmibcR2JTPQ","88tY6T6kuBNYK6SqZ","8LDT2ZpenfTjmMMno","8ZhNsicXvCE4nyWcN","8ugC6uXwMzhoSp4wB","8xpsiCtTYXQEYGLTP","9dQq2fNB9amND6NqW","9fSozvLi49Wd2k6Pd","AFDWh9LgtJhSJEwi3","BFQB4KANctixJ3Sfs","BLLm2LCvJ33E6GuXh","BxSTEPwmzRLFvfXL6","C6fZRvuMgYBEBzyYM","CHQTMtZuvADZfXgJd","CZvi2H2asJLAALrJQ","CgnJyMt6EmxE9qc7z","CoHtFsaXxxJEDkzx4","CrnMXWMrfdGQQMp9H","CyKf5TYJeZW2TzGaN","DAL87vLttTuzjk8JQ","DaXAcRYK8YRDbBWzh","DaXWoji6gA4a8zKuc","DcTgSq3jZPq3k5BJh","DhjKdGC2CLq2dqBtG","DnsvZkY67hXvabEeT","Dnv2JkX462Kd2wmyY","EBtyhQtfTSqDEXojL","EcBvaYYaFD25x8bjP","Eczya8Ni8N49T23S7","Edb5owSaFEFfzrsir","EdqQo3x2dGmmRwGgn","ErLDqxefTkQkAWwu3","EvbBPeivB6r4AucAW","F6gZFch6mSNjMgCho","FAACNxyf2jMgEG667","Fr8w4EjXrBjLEvDAB","Fxy9vF6MrAtYTRhmi","GEjiZMF5sHdHHb9gg","GGgdr25LouEFqGXuq","GMBnQjfkk9QtBBSJw","GZNZ2Z4auhnTAg4ZE","GjSJo6ccMHq8N6nyn","GkRjxzNbABPEAa2YM","Gte8oQ74gvywuS2oF","HEcHK84WNoGo2SYY5","HXFZbeqrhWS4Tw4fz","HXR7mJRk7Xgu3W28B","HXiC592K932GA2hvN","HnytLFJZtGdvwx2H3","HpyPwoF6qexw8K6jL","HtSpTmxn9aHTsJFm7","Hz7pyueFEj2oi9Mhw","JBiiaPwa8fXbE3DBk","JHeejLc2vWgrZxx8R","JMbnQnyLnPtzritsK","JgS8ruY5T2GEi4oXf","JokG7iHSHZ5w8XnHY","JrAYoP89cfBQv7XFp","K2a9bioD6A27YNCju","K3t3WfL4d55hE85yr","KPAPSo7KLSJ8kZASw","KWAfKPWPstQndPM4K","Kb3mP82Tt4LYCowE8","KpDe2R5u7SzzC5jy4","KzLRBgKoPozTbuttq","L5A7JHb4qonNYDiou","LjG2sHqtcQH2bHLAh","LrPi3B6iwxs27dkxd","LtBWJJMwMigPfHdsL","M7wxc36SLCo5jsSPG","MCp8yEDBWb84eWaW8","MNWFWpJRdGdMXy7pk","MqcHNph3jkccXosBw","MrgygF5PR4oHRhh2Z","N8c7XfxTF6jA6aGwd","NWqWxmE2sgaJzHFq2","NhRksNgvf7WYQqzyy","NnCYqzqLbYznnRTWM","NqTkWHdcCy8GQuono","NwwA95FLisyfqBxF9","NyDqK3eQwMb2CutfC","P9jyv38W9sDaAbhcp","PvsNTbAHBJu4JDoos","QNugvfzcwCNYYiiJd","QkpaMLue2DraRLbza","QsxRL27HSvEcPaW73","RJusd6bRr8Mov7QuQ","RP4K95prD84sAFQd2","ScWwPvRvpcZhE8FaS","SfDb4dBxa8d9wgB3M","T7mnrRuKyzYr63Ak4","TPq4mtYvr5xnz8wH5","Tg5ZHzLp6FG5re6rm","Tg9ZtLjnsYYs86LrA","ToLgA6zqcFjtpagJw","WXiprmZPjwEraGS68","WbCsSAHXRxCsDhrpq","WnRPanqybaznuuCb5","Wsszc2MrZbkX9KoMq","WvpWoN89iW6EXmzbB","X8uZM9Fp9XhZ2E99N","XGAj2bNJ4iFgiSSS3","XZDo85afJm5Bfi5bX","XoX9pv7oPwppp7cYk","XsesGC45jrfmXq7Zb","YYWaCWsTBuW3Gs2Wa","Ya7EmsEXprCnHMPdc","YfvziSj3Kx65KWBLq","ZBsTnWrmu3Ps7XkHv","ZYqsadcMxbGHkAZ87","ZdySh67XBRj6kCATW","ZeSktvEaXeygZTaX9","ZfFm9A9KyvTPmT2cy","a9QvxuoanvCJoa2kB","aE7pzRRfFCTMPFWnB","aeyFH7YusyHJMso6L","ahbSBuwxgeMjdhtWD","ahjdEjGa735SZGice","b2tGSi3cujupZFwsJ","bcgaRpkdTqjzv7Hvh","bf6CC8Wv5hBSTPJaZ","c2vQbmrgrxGEFGZyq","cLKAsQEhAtGH2Y4dz","cNdg2wxBoXcEo8Tbe","cP6PpYRYyg4JHgN9L","cRAqR4tsoLptboTXe","cnngPmEPG4kJwJCiz","cuqWPorYrJDXdAprs","cyc5gceauNMtM2fdn","d46p8QYKoDXXHnFEQ","dFTbsK95n6zDRZwyD","dWPTAhE68LdBoYZTb","daLurMKHNrn6Azgxm","doTqwGu3HiCbj2i5K","dxGnCGcLTqoqX49BA","eMGg9GPPvYg4fc6pk","eXQ9bcktkm2GTP6Lw","eYFuEkrmuraTr9gXB","exjSMciz7xKBgBcJf","fKE85ZPpdbfHoKhYL","fayKBQnwZ4M38zugT","fcbPLhDysH2Sis3pf","fq8MucWBycNwi3LG4","fzfZafAwG4eHhrbsb","g3sdh2J2MfYmqzLyg","gCRWK2KTe7ZLBZeNK","gESqKxZpXt4tN4LBk","gGQpp5nj3yfYhP2iC","gQeYSjv7YFvEfsLQJ","gZJWDQEg57ppBysZL","gfDo68cZHgy3jG9w5","gfzPjwC8H7JG4uHYn","h4f9wcj2tNC54AWQY","hfmjnMKZ26z9DzNtt","hk8CKtqWkr3yPvJiz","huAsyZ2M4yKBMGJMd","i3JFKJHTfd8y8Khmf","i5mvddcmcrAnqZGKF","i8aGLvawPdQmLWFoy","i9Jk9SBq8y3qomrkS","iLfq3N6H3xyDLy9bT","itgcZtBoFWS2nKiLx","j64RMiAEvak4z9zYK","jACG8xCaCPqeXmmsi","jN4vHZHTcjK8ZaTai","jmQt2nbfKogGHWnqr","kACwCefai6BgcbM5w","kHySXwpvcGLCGbq66","kXPCdqEutNxD55uPt","kkRq59ZAH88WsiHx2","m3xCETetLkNKGYx9q","mFMxnHhavspxhY5cb","mRFusg3GPzGF8BrkJ","mbFh7Q66wjiutuKYz","mchH2jPA5voCY6XQ9","miYA8WeMdWhKvBEXM","mqiPFXurGt8kfyuDr","n9rpGEgjiJkCjzdGZ","nLwFN8qRR8kGvfCfS","nyRnbwNG5LZiwkSWe","o6RfnkRH2qoHq29A9","oT4Z94F8B2RedP2u6","oY7bwHZuMWMnuxd7P","ocgd37btTrQLbGiSd","owgRJ52ix5EDXMrBq","pS3M93ddcpKhvnie3","pZAyZBu43dvADf3zi","pZv6RFotEysSWtRxW","paLk6ceccAArP9cjj","pafZgkefL8nPsEMjC","pdeYcXxJa25rDMbsm","pnhwS9FsjajcPF2Ao","ptb6WpkS3CphqCwig","qhcbaoBDTzfXGoiMR","qntEEeL7Meo3aJbCn","qoTKfG2PZB85DPFJs","qwi4mvdGihDJNML3d","rLpCWBAEnxtvGKQwx","rXCAJbs5zYwuxdqYm","rom5PB3Kgbex8ntvy","rtxbyx72NR4id2JY4","s2F6R7Z3yXocJgQha","s7EfP8HjKMXEMMN8M","s7nqLkXKwRCoFGafo","sXddSPrzipd7CEk8f","snsZYGpPznR92c5fK","tET88b2SwBF8jC7Rb","uDsBdovAxch78DyuE","uDw6BXXJm7KHiFrR6","ue2sMai8XYDA8ccyE","v4hEKjH6R2DMf3ank","v5fRwut8yvdDAEGiD","v6ByQCQZTboH74LmS","vE7mNKSJQFCF9N93E","vJnWr3ixNxqCzNbT7","vaKPDS6EABGo7zYii","vcgoFQEHo7PYCXA38","wK7uLMPYMQzedcbgB","wWpHe9grPfCpKZXmX","wbi45jaoKmocXKqjL","x4cJ5PxSiaqqtALqZ","x6BzRhnRQn2tLpz6h","xHMH9XipY7XDPL32f","xM5rZpnKb3DdKNhzM","xZNDvdcE7ednStGLP","xopXtCNTTGk94D3Q8","y6vYzKQfQAJ3qK6dp","y8Jgwedgun8P2J9Zz","yG9WjtXYdncjvJbYq","yYgj4vZBFZfJY2SyA","yhxew2x2qRdkwAmg2","yinZSaj7jA4kF4oRD","yjmWNBN7kyrKKmRpj","zYB4qMoXiXoNL9Qgv","zbX37nLWQYyoQx7nJ","zwWXk7qho8WKPkFQn"],"dataSources":["uBgvRxwCRYb2a7sHT","h2Y5q4GFvGzsKxqec","JkJ244LRhgy2CZQxC","8wbaz7Gtep8bp8uRz","viNceNMWZeH8oQexM","gsRvmgCMcSZfNmvGm","vidCmTfx8gWLwerzG","CnSgEsWZYFMqiFeqb","MWaMy463M7dBdgjbA"]}