2018 (8)
Gathering requirements for advancing simulations in HPC infrastructures via science gateways. Gesing, S.; Dooley, R.; Pierce, M.; Krüger, J.; Grunzke, R.; Herres-Pawlis, S.; and Hoffmann, A. Future Generation Computer Systems, 82: 544-554. 2018.
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Radar Determination of Fault Slip and Location in Partially Decorrelated Images. Parker, J.; Glasscoe, M.; Donnellan, A.; Stough, T.; Pierce, M.; and Wang, J. pages 101-116. Springer, 2018.
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A New Science Gateway to Provide Decision Support on Carbon Capture and Storage Technologies. Wang, Y.; Pamidighantam, S.; Yaw, S.; Abeysinghe, E.; Marru, S.; Christie, M.; Ellett, K.; Pierce, M.; and Middleton, R. In Proceedings of the Practice and Experience on Advanced Research Computing, of PEARC '18, pages 76:1--76:3, 2018. ACM
A New Science Gateway to Provide Decision Support on Carbon Capture and Storage Technologies [link]Website   bibtex
Searching the Sequence Read Archive Using Jetstream and Wrangler. Levi, K.; Rynge, M.; Abeysinghe, E.; and Edwards, R., A. In Proceedings of the Practice and Experience on Advanced Research Computing, of PEARC '18, pages 50:1--50:7, 2018. ACM
Searching the Sequence Read Archive Using Jetstream and Wrangler [link]Website   bibtex
Building a Science Gateway For Processing and Modeling Sequencing Data Via Apache Airavata. Wang, Z.; Christie, M., A.; Abeysinghe, E.; Chu, T.; Marru, S.; Pierce, M.; and Danko, C., G. In Proceedings of the Practice and Experience on Advanced Research Computing, of PEARC '18, pages 39:1--39:7, 2018. ACM
Building a Science Gateway For Processing and Modeling Sequencing Data Via Apache Airavata [link]Website   bibtex
Simplifying Access to Campus Resources at Southern Illinois University with a Science Gateway. Sunkara, S., S.; Langin, C.; Pierce, M.; Abeysinghe, E.; Pamidighantam, S.; and Marru, S. In Proceedings of the Practice and Experience on Advanced Research Computing, of PEARC '18, pages 98:1--98:4, 2018. ACM
Simplifying Access to Campus Resources at Southern Illinois University with a Science Gateway [link]Website   bibtex
Using a Science Gateway to Deliver SimVascular Software As a Service for Classroom Instruction. Wilson, N., M.; Marru, S.; Abeysinghe, E.; Christie, M., A.; Maher, G., D.; Updegrove, A., R.; Pierce, M.; and Marsden, A., L. In Proceedings of the Practice and Experience on Advanced Research Computing, of PEARC '18, pages 102:1--102:4, 2018. ACM
Using a Science Gateway to Deliver SimVascular Software As a Service for Classroom Instruction [link]Website   bibtex
  2017 (11)
Using the Jetstream Research Cloud to provide Science Gateway resources. Knepper, R.; Coulter, E.; Pierce, M.; Marru, S.; and Pamidighantam, S. 2017 17th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGRID),753-757. 5 2017.
Using the Jetstream Research Cloud to provide Science Gateway resources [link]Website   bibtex
SERVOGrid Technical Documentation. Aktas, M.; Aydin, G.; Fox, G.; Gadgil, H.; Pierce, M.; Sayar, A.; McLeod, D.; and Sung, S. Technical Report 2017.
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Gathering requirements for advancing simulations in HPC infrastructures via science gateways. Gesing, S.; Dooley, R.; Pierce, M.; Krüger, J.; Grunzke, R.; Herres-Pawlis, S.; and Hoffmann, A. Future Generation Computer Systems. 2017.
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Pervasive Technology Institute Annual Report: Research Innovations and Advanced Cyberinfrastructure Services in Support of IU Strategic Goals During FY 2017. Stewart, C.; Plale, B.; Welch, V.; Pierce, M.; Fox, G., C.; Doak, T., G.; Hancock, D., Y.; Henschel, R.; Link, M., R.; and Miller, T. Technical Report 2017.
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Science Gateways: Sustainability via On-Campus Teams. Gesing, S.; Lawrence, K.; Wilkins-Diehr, N.; Dahan, M.; Zentner, M.; and Pierce, M., E. In Gateways 2017, 2017.
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Better Data Discoverability in Science Gateways. Nakandala, S.; Pamidighantam, S.; Marru, S.; and Pierce, M. In Science Gateways, 2017.
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Science Gateways: The Long Road to the Birth of an Institute. Gesing, S.; Wilkins-Diehr, N.; Dahan, M.; Lawrence, K.; Zentner, M.; Pierce, M.; Hayden, L.; and Marru, S. In Proceedings of the 50th Hawaii International Conference on System Sciences, 2017.
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Indiana University Pervasive Technology Institute. Stewart, C., A.; Welch, V.; Plale, B.; Fox, G.; Pierce, M.; and Sterling, T. Technical Report 2017.
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QuakeSim lessons for NASA Earth Science sensor webs. Parker, J.; Donnellan, A.; and Pierce, M. Technical Report 2017.
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Radar Determination of Fault Slip and Location in Partially Decorrelated Images. Parker, J.; Glasscoe, M.; Donnellan, A.; Stough, T.; Pierce, M.; and Wang, J. Pure and Applied Geophysics, 174(6): 2295-2310. 2017.
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  2016 (8)
GSoC 2015 student contributions to GenApp and Airavata. Brookes, E., H.; Kapoor, A.; Patra, P.; Marru, S.; Singh, R.; and Pierce, M. Concurrency and Computation: Practice and Experience, 28(7): 1960-1970. 2016.
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Apache Airavata security manager: Authentication and authorization implementations for a multi-tenant escience framework. Nakandala, S.; Gunasinghe, H.; Marru, S.; and Pierce, M. In e-Science (e-Science), 2016 IEEE 12th International Conference on, pages 287-292, 2016.
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Anatomy of the SEAGrid Science Gateway. Nakandala, S.; Pamidighantam, S.; Yodage, S.; Doshi, N.; Abeysinghe, E.; Kankanamalage, C., P.; Marru, S.; and Pierce, M. In Proceedings of the XSEDE16 Conference on Diversity, Big Data, and Science at Scale, pages 40, 2016.
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Integrating Apache Airavata with Docker, Marathon, and Mesos. Saha, P.; Govindaraju, M.; Marru, S.; and Pierce, M. Concurrency and Computation: Practice and Experience, 28(7): 1952-1959. 2016.
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Community science exemplars in seagrid science gateway: Apache airavata based implementation of advanced infrastructure. Pamidighantam, S.; Nakandala, S.; Abeysinghe, E.; Wimalasena, C.; Yodage, S., R.; Marru, S.; and Pierce, M. Procedia Computer Science, 80: 1927-1939. 2016.
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Gathering requirements for advancing simulations in HPC infrastructures via science gateways. Gesing, S.; Dooley, R.; Pierce, M.; Krüger, J.; Grunzke, R.; Herres-Pawlis, S.; and Hoffmann, A. Future Generation Computer Systems. 2016.
Gathering requirements for advancing simulations in HPC infrastructures via science gateways [link]Website   bibtex   abstract
GeoGateway: A system for analysis of UAVSAR data products. Donnellan, A.; Parker, J.; Glasscoe, M.; Granat, R.; Pierce, M.; Wang, J.; Ma, Y.; Ludwig, L., G.; and Rundle, J. In Geoscience and Remote Sensing Symposium (IGARSS), 2016 IEEE International, pages 210-213, 2016.
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Cyberinfrastructure as a platform to facilitate effective collaboration between institutions and support collaboratories. Coulter, E.; Knepper, R.; Pierce, M.; Fischer, J.; Lifka, D.; Stewart, C.; Hallock, B.; and Navarro, J. In Proceedings ACM SIGUCCS User Services Conference, volume 06-09-Nove, 2016.
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  2015 (16)
The apache airavata application programming interface: Overview and evaluation with the Ultrascan Science Gateway. Pierce, M.; Marru, S.; Demeler, B.; Singh, R.; and Gorbet, G. In Proceedings of GCE 2014: 9th Gateway Computing Environments Workshop, held in conjunction with SC 2014: The International Conference for High Performance Computing, Networking, Storage and Analysis, pages 25-29, 2015. Institute of Electrical and Electronics Engineers Inc.
The apache airavata application programming interface: Overview and evaluation with the Ultrascan Science Gateway [link]Website   bibtex   abstract
Authentication and authorization considerations for a multi-tenant service. Heiland, R.; Koranda, S.; Marru, S.; Pierce, M.; and Welch, V. In SCREAM 2015 - Proceedings of the 2015 Workshop on the Science of Cyberinfrastructure: Research, Experience, Applications and Models, Part of HPDC 2015, pages 29-35, 2015. Association for Computing Machinery, Inc
Authentication and authorization considerations for a multi-tenant service [link]Website   bibtex   abstract
Apache Airavata as a laboratory: architecture and case study for component-based gateway middleware. Marru, S.; Pierce, M.; Pamidighantam, S.; and Wimalasena, C. In Proceedings of the 1st Workshop on The Science of Cyberinfrastructure: Research, Experience, Applications and Models, pages 19-26, 2015.
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Disaster Response Tools for Decision Support and Data Discovery-E-DECIDER and GeoGateway. Glasscoe, M., T.; Donnellan, A.; Parker, J., W.; Granat, R., A.; Lyzenga, G., A.; Pierce, M., E.; Wang, J.; Grant Ludwig, L.; Eguchi, R., T.; Huyck, C., K.; and others In AGU Fall Meeting Abstracts, 2015.
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The GenApp framework integrated with Airavata for managed compute resource submissions. Brookes, E., H.; Anjum, N.; Curtis, J., E.; Marru, S.; Singh, R.; and Pierce, M. Concurrency and Computation: Practice and Experience, 27(16): 4292-4303. 2015.
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Science gateways today and tomorrow: Positive perspectives of nearly 5000 members of the research community. Lawrence, K., A.; Zentner, M.; Wilkins-Diehr, N.; Wernert, J., A.; Pierce, M.; Marru, S.; and Michael, S. Concurrency Computation , 27(16): 4252-4268. 2015.
Science gateways today and tomorrow: Positive perspectives of nearly 5000 members of the research community [link]Website   bibtex   abstract
Potential for a large earthquake near Los Angeles inferred from the 2014 La Habra earthquake. Donnellan, A.; Grant Ludwig, L.; Parker, J., W.; Rundle, J., B.; Wang, J.; Pierce, M.; Blewitt, G.; and Hensley, S. Earth and Space Science, 2(9): 378-385. 2015.
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Multihazard simulation and cyberinfrastructure. Donnellan, A.; Williams, C.; and Pierce, M. Pure and Applied Geophysics, 172(8): 2083-2085. 2015.
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E-decider: Using earth science data and modeling tools to develop decision support for earthquake disaster response. Glasscoe, M., T.; Wang, J.; Pierce, M., E.; Yoder, M., R.; Parker, J., W.; Burl, M., C.; Stough, T., M.; Granat, R., A.; Donnellan, A.; Rundle, J., B.; and others Pure and Applied Geophysics, 172(8): 2305-2324. 2015.
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Advantages to Geoscience and disaster response from QuakeSim implementation of interferometric radar maps in a GIS database system. Parker, J.; Donnellan, A.; Glasscoe, M.; Fox, G.; Wang, J.; Pierce, M.; Ma, Y.; Wang, J.; and Ma, Y. Pure and Applied Geophysics, 172(8): 2295-2304. 2015.
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Web Services for Dynamic Coloring of UAVSAR Images. Wang, J.; Pierce, M.; Donnellan, A.; and Parker, J. Pure and Applied Geophysics, 172(8): 2325-2332. 2015.
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An Overview of the XSEDE Extended Collaborative Support Program. Wilkins-Diehr, N.; Sanielevici, S.; Alameda, J.; Cazes, J.; Crosby, L.; Pierce, M.; and Roskies, R. In International Conference on Supercomputing, volume 595, pages 3-13, 2015. Springer Verlag
An Overview of the XSEDE Extended Collaborative Support Program [link]Website   bibtex   abstract
Science gateways-leveraging modeling and simulations in HPC infrastructures via increased usability. Gesing, S.; Dooley, R.; Pierce, M.; Krüger, J.; Grunzke, R.; Herres-Pawlis, S.; and Hoffmann, A. In High Performance Computing & Simulation (HPCS), 2015 International Conference on, pages 19-26, 2015.
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GenApp module execution and airavata integration. Brookes, E., H.; Anjum, N.; Curtis, J., E.; Marru, S.; Singh, R.; and Pierce, M. In Proceedings of GCE 2014: 9th Gateway Computing Environments Workshop, held in conjunction with SC 2014: The International Conference for High Performance Computing, Networking, Storage and Analysis, pages 9-12, 2015. Institute of Electrical and Electronics Engineers Inc.
GenApp module execution and airavata integration [link]Website   bibtex   abstract
Sustained software for cyberinfrastructure - Analyses of successful efforts with a focus on NSF-funded software. Stewart, C.; Barnett, W.; Wernert, E.; Wernert, J.; Welch, V.; and Knepper, R. In SCREAM 2015 - Proceedings of the 2015 Workshop on the Science of Cyberinfrastructure: Research, Experience, Applications and Models, Part of HPDC 2015, 2015.
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  2014 (15)
Apache Airavata: design and directions of a science gateway framework. Pierce, M., E.; Marru, S.; Gunathilake, L.; Wijeratne, D., K.; Singh, R.; Wimalasena, C.; Ratnayaka, S.; Pamidighantam, S.; Kanewala, T., A.; Singh, R.; Wijeratne, S.; Wimalasena, C.; Herath, C.; Chinthaka, E.; Mattmann, C.; Slominski, A.; and Tangchaisin, P. In Proceedings - 6th International Workshop on Science Gateways, IWSG 2014, volume 27, pages 4282-4291, 2014. IEEE Computer Society
Apache Airavata: design and directions of a science gateway framework [link]Website   bibtex   abstract
E-DECIDER Rapid Response to the M 6.0 South Napa Earthquake. Glasscoe, M., T.; Parker, J., W.; Pierce, M., E.; Wang, J.; Eguchi, R., T.; Huyck, C., K.; Hu, Z.; Chen, Z.; Yoder, M., R.; Rundle, J., B.; and others In AGU Fall Meeting Abstracts, 2014.
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CTSC Recommended Security Practices for Thrift Clients: Case Study-Evernote. Heiland, R.; Marru, S.; Pierce, M.; and Welch, V. Technical Report 2014.
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Who Cares About Science Gateways? A Large-Scale Survey of Community Use and Needs (Dataset). Lawrence, K., A.; Wilkins-Diehr, N.; Wernert, J., A.; Pierce, M.; Zentner, M.; Marru, S.; Wilkins-Diehr, N.; Wernert, J., A.; Pierce, M.; Marru, S.; Michael, S.; Zentner, M.; Marru, S.; Wilkins-Diehr, N.; Wernert, J., A.; Pierce, M.; Marru, S.; and Michael, S. In Proceedings of the 9th Gateway Computing Environments Workshop, pages 1-4, 2014.
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E-DECIDER Disaster Response and Decision Support Cyberinfrastructure: Technology and Challenges. Glasscoe, M., T.; Parker, J., W.; Pierce, M., E.; Wang, J.; Eguchi, R., T.; Huyck, C., K.; Hu, Z.; Chen, Z.; Yoder, M., R.; Rundle, J., B.; and others In AGU Fall Meeting Abstracts, 2014.
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Integrating science gateways with xsede security: A survey of credential management approaches. Basney, J.; Gaynor, J.; Marru, S.; Pierce, M.; Kanewala, T., A.; Dooley, R.; and Stubbs, J. In Proceedings of the 2014 Annual Conference on Extreme Science and Engineering Discovery Environment, pages 58, 2014.
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UAVSAR observations of triggered slip on the Imperial, Superstition Hills, and East Elmore Ranch Faults associated with the 2010 M 7.2 El Mayor-Cucapah earthquake. Donnellan, A.; Parker, J.; Hensley, S.; Pierce, M.; Wang, J.; and Rundle, J. Geochemistry, Geophysics, Geosystems, 15(3): 815-829. 2014.
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WSSSPE2: Patching it up, pulling it forward. Pierce, M., E.; Marru, S.; and Mattmann, C. Journal of Open Research Software, 1112540(1). 2014.
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Cloud computing for geodetic imaging data processing, analysis, and modeling. Donnellan, A.; Parker, J., W.; Wang, J.; Ma, Y.; and Pierce, M. In Aerospace Conference, 2014 IEEE, pages 1-9, 2014.
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Science Gateways, Scientific Workflows and Open Community Software. Pierce, M., E.; and Marru, S. In AGU Fall Meeting Abstracts, 2014.
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A credential store for multi-tenant science gateways. Kanewala, T., A.; Marru, S.; Basney, J.; and Pierce, M. In Cluster, Cloud and Grid Computing (CCGrid), 2014 14th IEEE/ACM International Symposium on, pages 445-454, 2014.
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Combined UAVSAR and GPS Estimates of Fault Slip for the M 6.0 South Napa Earthquake. Donnellan, A.; Parker, J., W.; Hawkins, B.; Hensley, S.; Jones, C., E.; Owen, S., E.; Moore, A., W.; Wang, J.; Pierce, M., E.; and Rundle, J., B. In AGU Fall Meeting Abstracts, 2014.
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Applications of E-DECIDER Decision Support Tools for Disaster Response and Recovery. Glasscoe, M., T.; Parker, J., W.; Wang, J.; Pierce, M., E.; Yoder, M., R.; Eguchi, R., T.; Huyck, C., K.; Hu, Z.; Bevington, J.; Ghosh, S.; and others 2014.
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GenApp module execution and airavata integration. Brookes, E., H.; Anjum, N.; Curtis, J., E.; Marru, S.; Singh, R.; and Pierce, M. In Proceedings of the 9th Gateway Computing Environments Workshop, pages 9-12, 2014.
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The apache airavata application programming interface: overview and evaluation with the UltraScan science gateway. Pierce, M.; Marru, S.; Demeler, B.; Singh, R.; and Gorbet, G. In Proceedings of the 9th Gateway Computing Environments Workshop, pages 25-29, 2014.
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  2013 (13)
Authoring a Science Gateway Cookbook. Marru, S.; Dooley, R.; Wilkins-Diehr, N.; Pierce, M.; Miller, M.; Pamidighantam, S.; and Wernert, J. In Cluster Computing (CLUSTER), 2013 IEEE International Conference on, pages 1-3, 2013.
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US-SOMO Cluster Methods: Year One Perspective. Brookes, E.; Singh, R.; Pierce, M.; Marru, S.; Demeler, B.; and Rocco, M. In XSEDE '13 Proceedings of the Conference on Extreme Science and Engineering Discovery Environment: Gateway to Discovery, 2013. ACM
US-SOMO Cluster Methods: Year One Perspective [link]Website   bibtex
Science gateways and the importance of sustainability. Wilkins-Diehr, N.; Lawrence, K.; Hayden, L.; Pierce, M.; Marru, S.; McLennan, M.; Zentner, M.; Dooley, R.; and Stanzione, D. figshare,790764. 2013.
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Science Gateway Operational Sustainability: Adopting a Platform-as-a Service Approach. Pierce, M.; Marru, S.; Miller, M., A.; Majumdar, A.; and Demeler, B. Technical Report 2013.
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Science Gateways. Pierce, M. 2013.
Science Gateways [link]Website   bibtex
QuakeSim data architecture and technology. Donnellan, A.; Glasscoe, M.; Parker, J.; Granat, R.; Pierce, M.; Wang, J.; Rundle, J.; Sachs, M.; and Ludwig, L., G. Technical Report 2013.
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Integrating remotely sensed and ground observations for modeling, analysis, and decision support. Donnellan, A.; Glasscoe, M.; Parker, J., W.; Granat, R.; Pierce, M.; Wang, J.; Fox, G.; McLeod, D.; Rundle, J.; Heien, E.; and others In Aerospace Conference, 2013 IEEE, pages 1-12, 2013.
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Apache Airavata: Building Gateways to Innovation. Pierce, M.; Marru, S.; Wijeratne, S.; Singh, R.; and Suriyaarachchi, H. 2013.
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Twitter bootstrap and AngularJS: Frontend frameworks to expedite science gateway development. Balasubramanee, V.; Wimalasena, C.; Singh, R.; and Pierce, M. In Cluster Computing (CLUSTER), 2013 IEEE International Conference on, pages 1, 2013.
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Chaining Data and Visualization Web Services for Decision Making in Information Systems. Sayar, A.; and Pierce, M., E. In International Conference on Availability, Reliability, and Security, pages 44-53, 2013.
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Sustainable cyberinfrastructure software through open governance. Pierce, M.; Marru, S.; and Mattmann, C. Technical Report 2013.
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Enabling Dark Energy Survey science analysis with simulations on XSEDE resources. Erickson, B., M., S.; Singh, R.; Evrard, A.; Becker, M., R.; Busha, M.; Kravtsov, A., V.; Marru, S.; Pierce, M.; and Wechsler, R., H. In XSEDE '13 Proceedings of the Conference on Extreme Science and Engineering Discovery Environment: Gateway to Discovery, 2013. ACM
Enabling Dark Energy Survey science analysis with simulations on XSEDE resources [link]Website   bibtex
E-DECIDER Decision Support Gateway For Earthquake Disaster Response. Glasscoe, M., T.; Stough, T., M.; Parker, J., W.; Burl, M., C.; Donnellan, A.; Blom, R., G.; Pierce, M., E.; Wang, J.; Ma, Y.; Rundle, J., B.; and others In AGU Fall Meeting Abstracts, 2013.
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  2012 (21)
A high throughput workflow environment for cosmological simulations. Brandon, E.; Evrard, A., E.; Singh, R.; Marru, S.; Pierce, M.; Becker, M., R.; Kravtsov, A., V.; Busha, M., T.; Wechsler, R., H.; Ricker, P., M.; others; Erickson, B.; Singh, R.; Evrard, A., E.; Becker, M., R.; Busha, M., T.; Kravtsov, A., V.; Marru, S.; Pierce, M.; and Wechsler, R., H. In American Astronomical Society Meeting Abstracts# 221, volume 221, pages 34, 2012.
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