2017 (11)
Using the Jetstream Research Cloud to provide Science Gateway resources. Knepper, R.; Coulter, E.; Pierce, M.; Marru, S.; and Pamidighantam, S. 2017 17th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGRID), 753-757. 5 2017.
Using the Jetstream Research Cloud to provide Science Gateway resources [link]Website   bibtex
SERVOGrid Technical Documentation. Aktas, M.; Aydin, G.; Fox, G.; Gadgil, H.; Pierce, M.; Sayar, A.; McLeod, D.; and Sung, S. Technical Report 2017.
bibtex
Gathering requirements for advancing simulations in HPC infrastructures via science gateways. Gesing, S.; Dooley, R.; Pierce, M.; Krüger, J.; Grunzke, R.; Herres-Pawlis, S.; and Hoffmann, A. Future Generation Computer Systems, . 2017.
bibtex
Pervasive Technology Institute Annual Report: Research Innovations and Advanced Cyberinfrastructure Services in Support of IU Strategic Goals During FY 2017. Stewart, C.; Plale, B.; Welch, V.; Pierce, M.; Fox, G., C.; Doak, T., G.; Hancock, D., Y.; Henschel, R.; Link, M., R.; and Miller, T. Technical Report 2017.
bibtex
Science Gateways: Sustainability via On-Campus Teams. Gesing, S.; Lawrence, K.; Wilkins-Diehr, N.; Dahan, M.; Zentner, M.; and Pierce, M., E. In Gateways 2017, 2017.
bibtex
Better Data Discoverability in Science Gateways. Nakandala, S.; Pamidighantam, S.; Marru, S.; and Pierce, M. In Science Gateways, 2017.
bibtex
Science Gateways: The Long Road to the Birth of an Institute. Gesing, S.; Wilkins-Diehr, N.; Dahan, M.; Lawrence, K.; Zentner, M.; Pierce, M.; Hayden, L.; and Marru, S. In Proceedings of the 50th Hawaii International Conference on System Sciences, 2017.
bibtex
Indiana University Pervasive Technology Institute. Stewart, C., A.; Welch, V.; Plale, B.; Fox, G.; Pierce, M.; and Sterling, T. Technical Report 2017.
bibtex
QuakeSim lessons for NASA Earth Science sensor webs. Parker, J.; Donnellan, A.; and Pierce, M. Technical Report 2017.
bibtex
Radar Determination of Fault Slip and Location in Partially Decorrelated Images. Parker, J.; Glasscoe, M.; Donnellan, A.; Stough, T.; Pierce, M.; and Wang, J. Pure and Applied Geophysics, 174(6): 2295-2310. 2017.
bibtex   abstract
  2016 (8)
GSoC 2015 student contributions to GenApp and Airavata. Brookes, E., H.; Kapoor, A.; Patra, P.; Marru, S.; Singh, R.; and Pierce, M. Concurrency and Computation: Practice and Experience, 28(7): 1960-1970. 2016.
bibtex
Apache Airavata security manager: Authentication and authorization implementations for a multi-tenant escience framework. Nakandala, S.; Gunasinghe, H.; Marru, S.; and Pierce, M. In e-Science (e-Science), 2016 IEEE 12th International Conference on, pages 287-292, 2016.
bibtex
Anatomy of the SEAGrid Science Gateway. Nakandala, S.; Pamidighantam, S.; Yodage, S.; Doshi, N.; Abeysinghe, E.; Kankanamalage, C., P.; Marru, S.; and Pierce, M. In Proceedings of the XSEDE16 Conference on Diversity, Big Data, and Science at Scale, pages 40, 2016.
bibtex
Integrating Apache Airavata with Docker, Marathon, and Mesos. Saha, P.; Govindaraju, M.; Marru, S.; and Pierce, M. Concurrency and Computation: Practice and Experience, 28(7): 1952-1959. 2016.
bibtex
Community science exemplars in seagrid science gateway: Apache airavata based implementation of advanced infrastructure. Pamidighantam, S.; Nakandala, S.; Abeysinghe, E.; Wimalasena, C.; Yodage, S., R.; Marru, S.; and Pierce, M. Procedia Computer Science, 80: 1927-1939. 2016.
bibtex
Gathering requirements for advancing simulations in HPC infrastructures via science gateways. Gesing, S.; Dooley, R.; Pierce, M.; Krüger, J.; Grunzke, R.; Herres-Pawlis, S.; and Hoffmann, A. Future Generation Computer Systems, . 2016.
Gathering requirements for advancing simulations in HPC infrastructures via science gateways [link]Website   bibtex   abstract
GeoGateway: A system for analysis of UAVSAR data products. Donnellan, A.; Parker, J.; Glasscoe, M.; Granat, R.; Pierce, M.; Wang, J.; Ma, Y.; Ludwig, L., G.; and Rundle, J. In Geoscience and Remote Sensing Symposium (IGARSS), 2016 IEEE International, pages 210-213, 2016.
bibtex
Cyberinfrastructure as a platform to facilitate effective collaboration between institutions and support collaboratories. Coulter, E.; Knepper, R.; Pierce, M.; Fischer, J.; Lifka, D.; Stewart, C.; Hallock, B.; and Navarro, J. In Proceedings ACM SIGUCCS User Services Conference, volume 06-09-Nove, 2016.
bibtex   abstract
  2015 (15)
The apache airavata application programming interface: Overview and evaluation with the Ultrascan Science Gateway. Pierce, M.; Marru, S.; Demeler, B.; Singh, R.; and Gorbet, G. In Proceedings of GCE 2014: 9th Gateway Computing Environments Workshop, held in conjunction with SC 2014: The International Conference for High Performance Computing, Networking, Storage and Analysis, pages 25-29, 2015. Institute of Electrical and Electronics Engineers Inc.
The apache airavata application programming interface: Overview and evaluation with the Ultrascan Science Gateway [link]Website   bibtex   abstract
Authentication and authorization considerations for a multi-tenant service. Heiland, R.; Koranda, S.; Marru, S.; Pierce, M.; and Welch, V. In SCREAM 2015 - Proceedings of the 2015 Workshop on the Science of Cyberinfrastructure: Research, Experience, Applications and Models, Part of HPDC 2015, pages 29-35, 2015. Association for Computing Machinery, Inc
Authentication and authorization considerations for a multi-tenant service [link]Website   bibtex   abstract
Apache Airavata as a laboratory: architecture and case study for component-based gateway middleware. Marru, S.; Pierce, M.; Pamidighantam, S.; and Wimalasena, C. In Proceedings of the 1st Workshop on The Science of Cyberinfrastructure: Research, Experience, Applications and Models, pages 19-26, 2015.
bibtex
Disaster Response Tools for Decision Support and Data Discovery-E-DECIDER and GeoGateway. Glasscoe, M., T.; Donnellan, A.; Parker, J., W.; Granat, R., A.; Lyzenga, G., A.; Pierce, M., E.; Wang, J.; Grant Ludwig, L.; Eguchi, R., T.; Huyck, C., K.; and others In AGU Fall Meeting Abstracts, 2015.
bibtex
The GenApp framework integrated with Airavata for managed compute resource submissions. Brookes, E., H.; Anjum, N.; Curtis, J., E.; Marru, S.; Singh, R.; and Pierce, M. Concurrency and Computation: Practice and Experience, 27(16): 4292-4303. 2015.
bibtex
Science gateways today and tomorrow: Positive perspectives of nearly 5000 members of the research community. Lawrence, K., A.; Zentner, M.; Wilkins-Diehr, N.; Wernert, J., A.; Pierce, M.; Marru, S.; and Michael, S. Concurrency Computation , 27(16): 4252-4268. 2015.
Science gateways today and tomorrow: Positive perspectives of nearly 5000 members of the research community [link]Website   bibtex   abstract
Potential for a large earthquake near Los Angeles inferred from the 2014 La Habra earthquake. Donnellan, A.; Grant Ludwig, L.; Parker, J., W.; Rundle, J., B.; Wang, J.; Pierce, M.; Blewitt, G.; and Hensley, S. Earth and Space Science, 2(9): 378-385. 2015.
bibtex
Multihazard simulation and cyberinfrastructure. Donnellan, A.; Williams, C.; and Pierce, M. Pure and Applied Geophysics, 172(8): 2083-2085. 2015.
bibtex
E-decider: Using earth science data and modeling tools to develop decision support for earthquake disaster response. Glasscoe, M., T.; Wang, J.; Pierce, M., E.; Yoder, M., R.; Parker, J., W.; Burl, M., C.; Stough, T., M.; Granat, R., A.; Donnellan, A.; Rundle, J., B.; and others Pure and Applied Geophysics, 172(8): 2305-2324. 2015.
bibtex
Advantages to Geoscience and disaster response from QuakeSim implementation of interferometric radar maps in a GIS database system. Parker, J.; Donnellan, A.; Glasscoe, M.; Fox, G.; Wang, J.; Pierce, M.; Ma, Y.; Wang, J.; and Ma, Y. Pure and Applied Geophysics, 172(8): 2295-2304. 2015.
bibtex
Web Services for Dynamic Coloring of UAVSAR Images. Wang, J.; Pierce, M.; Donnellan, A.; and Parker, J. Pure and Applied Geophysics, 172(8): 2325-2332. 2015.
bibtex
An Overview of the XSEDE Extended Collaborative Support Program. Wilkins-Diehr, N.; Sanielevici, S.; Alameda, J.; Cazes, J.; Crosby, L.; Pierce, M.; and Roskies, R. In International Conference on Supercomputing, volume 595, pages 3-13, 2015. Springer Verlag
An Overview of the XSEDE Extended Collaborative Support Program [link]Website   bibtex   abstract
Science gateways-leveraging modeling and simulations in HPC infrastructures via increased usability. Gesing, S.; Dooley, R.; Pierce, M.; Krüger, J.; Grunzke, R.; Herres-Pawlis, S.; and Hoffmann, A. In High Performance Computing & Simulation (HPCS), 2015 International Conference on, pages 19-26, 2015.
bibtex
GenApp module execution and airavata integration. Brookes, E., H.; Anjum, N.; Curtis, J., E.; Marru, S.; Singh, R.; and Pierce, M. In Proceedings of GCE 2014: 9th Gateway Computing Environments Workshop, held in conjunction with SC 2014: The International Conference for High Performance Computing, Networking, Storage and Analysis, pages 9-12, 2015. Institute of Electrical and Electronics Engineers Inc.
GenApp module execution and airavata integration [link]Website   bibtex   abstract
  2014 (15)
Apache Airavata: design and directions of a science gateway framework. Pierce, M., E.; Marru, S.; Gunathilake, L.; Wijeratne, D., K.; Singh, R.; Wimalasena, C.; Ratnayaka, S.; Pamidighantam, S.; Kanewala, T., A.; Singh, R.; Wijeratne, S.; Wimalasena, C.; Herath, C.; Chinthaka, E.; Mattmann, C.; Slominski, A.; and Tangchaisin, P. In Proceedings - 6th International Workshop on Science Gateways, IWSG 2014, volume 27, pages 4282-4291, 2014. IEEE Computer Society
Apache Airavata: design and directions of a science gateway framework [link]Website   bibtex   abstract
E-DECIDER Rapid Response to the M 6.0 South Napa Earthquake. Glasscoe, M., T.; Parker, J., W.; Pierce, M., E.; Wang, J.; Eguchi, R., T.; Huyck, C., K.; Hu, Z.; Chen, Z.; Yoder, M., R.; Rundle, J., B.; and others In AGU Fall Meeting Abstracts, 2014.
bibtex
CTSC Recommended Security Practices for Thrift Clients: Case Study-Evernote. Heiland, R.; Marru, S.; Pierce, M.; and Welch, V. Technical Report 2014.
bibtex
Who Cares About Science Gateways? A Large-Scale Survey of Community Use and Needs (Dataset). Lawrence, K., A.; Wilkins-Diehr, N.; Wernert, J., A.; Pierce, M.; Zentner, M.; Marru, S.; Wilkins-Diehr, N.; Wernert, J., A.; Pierce, M.; Marru, S.; Michael, S.; Zentner, M.; Marru, S.; Wilkins-Diehr, N.; Wernert, J., A.; Pierce, M.; Marru, S.; and Michael, S. In Proceedings of the 9th Gateway Computing Environments Workshop, pages 1-4, 2014.
bibtex
E-DECIDER Disaster Response and Decision Support Cyberinfrastructure: Technology and Challenges. Glasscoe, M., T.; Parker, J., W.; Pierce, M., E.; Wang, J.; Eguchi, R., T.; Huyck, C., K.; Hu, Z.; Chen, Z.; Yoder, M., R.; Rundle, J., B.; and others In AGU Fall Meeting Abstracts, 2014.
bibtex
Integrating science gateways with xsede security: A survey of credential management approaches. Basney, J.; Gaynor, J.; Marru, S.; Pierce, M.; Kanewala, T., A.; Dooley, R.; and Stubbs, J. In Proceedings of the 2014 Annual Conference on Extreme Science and Engineering Discovery Environment, pages 58, 2014.
bibtex
UAVSAR observations of triggered slip on the Imperial, Superstition Hills, and East Elmore Ranch Faults associated with the 2010 M 7.2 El Mayor-Cucapah earthquake. Donnellan, A.; Parker, J.; Hensley, S.; Pierce, M.; Wang, J.; and Rundle, J. Geochemistry, Geophysics, Geosystems, 15(3): 815-829. 2014.
bibtex
WSSSPE2: Patching it up, pulling it forward. Pierce, M., E.; Marru, S.; and Mattmann, C. Journal of Open Research Software, 1112540(1). 2014.
bibtex
Cloud computing for geodetic imaging data processing, analysis, and modeling. Donnellan, A.; Parker, J., W.; Wang, J.; Ma, Y.; and Pierce, M. In Aerospace Conference, 2014 IEEE, pages 1-9, 2014.
bibtex
Science Gateways, Scientific Workflows and Open Community Software. Pierce, M., E.; and Marru, S. In AGU Fall Meeting Abstracts, 2014.
bibtex
A credential store for multi-tenant science gateways. Kanewala, T., A.; Marru, S.; Basney, J.; and Pierce, M. In Cluster, Cloud and Grid Computing (CCGrid), 2014 14th IEEE/ACM International Symposium on, pages 445-454, 2014.
bibtex
Combined UAVSAR and GPS Estimates of Fault Slip for the M 6.0 South Napa Earthquake. Donnellan, A.; Parker, J., W.; Hawkins, B.; Hensley, S.; Jones, C., E.; Owen, S., E.; Moore, A., W.; Wang, J.; Pierce, M., E.; and Rundle, J., B. In AGU Fall Meeting Abstracts, 2014.
bibtex
Applications of E-DECIDER Decision Support Tools for Disaster Response and Recovery. Glasscoe, M., T.; Parker, J., W.; Wang, J.; Pierce, M., E.; Yoder, M., R.; Eguchi, R., T.; Huyck, C., K.; Hu, Z.; Bevington, J.; Ghosh, S.; and others 2014.
bibtex   buy
GenApp module execution and airavata integration. Brookes, E., H.; Anjum, N.; Curtis, J., E.; Marru, S.; Singh, R.; and Pierce, M. In Proceedings of the 9th Gateway Computing Environments Workshop, pages 9-12, 2014.
bibtex
The apache airavata application programming interface: overview and evaluation with the UltraScan science gateway. Pierce, M.; Marru, S.; Demeler, B.; Singh, R.; and Gorbet, G. In Proceedings of the 9th Gateway Computing Environments Workshop, pages 25-29, 2014.
bibtex
  2013 (13)
Authoring a Science Gateway Cookbook. Marru, S.; Dooley, R.; Wilkins-Diehr, N.; Pierce, M.; Miller, M.; Pamidighantam, S.; and Wernert, J. In Cluster Computing (CLUSTER), 2013 IEEE International Conference on, pages 1-3, 2013.
bibtex
US-SOMO Cluster Methods: Year One Perspective. Brookes, E.; Singh, R.; Pierce, M.; Marru, S.; Demeler, B.; and Rocco, M. In XSEDE '13 Proceedings of the Conference on Extreme Science and Engineering Discovery Environment: Gateway to Discovery, 2013. ACM
US-SOMO Cluster Methods: Year One Perspective [link]Website   bibtex
Science gateways and the importance of sustainability. Wilkins-Diehr, N.; Lawrence, K.; Hayden, L.; Pierce, M.; Marru, S.; McLennan, M.; Zentner, M.; Dooley, R.; and Stanzione, D. figshare, 790764. 2013.
bibtex
Science Gateway Operational Sustainability: Adopting a Platform-as-a Service Approach. Pierce, M.; Marru, S.; Miller, M., A.; Majumdar, A.; and Demeler, B. Technical Report 2013.
bibtex
Science Gateways. Pierce, M. 2013.
Science Gateways [link]Website   bibtex
QuakeSim data architecture and technology. Donnellan, A.; Glasscoe, M.; Parker, J.; Granat, R.; Pierce, M.; Wang, J.; Rundle, J.; Sachs, M.; and Ludwig, L., G. Technical Report 2013.
bibtex
Integrating remotely sensed and ground observations for modeling, analysis, and decision support. Donnellan, A.; Glasscoe, M.; Parker, J., W.; Granat, R.; Pierce, M.; Wang, J.; Fox, G.; McLeod, D.; Rundle, J.; Heien, E.; and others In Aerospace Conference, 2013 IEEE, pages 1-12, 2013.
bibtex
Apache Airavata: Building Gateways to Innovation. Pierce, M.; Marru, S.; Wijeratne, S.; Singh, R.; and Suriyaarachchi, H. 2013.
bibtex
Twitter bootstrap and AngularJS: Frontend frameworks to expedite science gateway development. Balasubramanee, V.; Wimalasena, C.; Singh, R.; and Pierce, M. In Cluster Computing (CLUSTER), 2013 IEEE International Conference on, pages 1, 2013.
bibtex
Chaining Data and Visualization Web Services for Decision Making in Information Systems. Sayar, A.; and Pierce, M., E. In International Conference on Availability, Reliability, and Security, pages 44-53, 2013.
bibtex
Sustainable cyberinfrastructure software through open governance. Pierce, M.; Marru, S.; and Mattmann, C. Technical Report 2013.
bibtex
Enabling Dark Energy Survey science analysis with simulations on XSEDE resources. Erickson, B., M., S.; Singh, R.; Evrard, A.; Becker, M., R.; Busha, M.; Kravtsov, A., V.; Marru, S.; Pierce, M.; and Wechsler, R., H. In XSEDE '13 Proceedings of the Conference on Extreme Science and Engineering Discovery Environment: Gateway to Discovery, 2013. ACM
Enabling Dark Energy Survey science analysis with simulations on XSEDE resources [link]Website   bibtex
E-DECIDER Decision Support Gateway For Earthquake Disaster Response. Glasscoe, M., T.; Stough, T., M.; Parker, J., W.; Burl, M., C.; Donnellan, A.; Blom, R., G.; Pierce, M., E.; Wang, J.; Ma, Y.; Rundle, J., B.; and others In AGU Fall Meeting Abstracts, 2013.
bibtex
  2012 (21)
A high throughput workflow environment for cosmological simulations. Brandon, E.; Evrard, A., E.; Singh, R.; Marru, S.; Pierce, M.; Becker, M., R.; Kravtsov, A., V.; Busha, M., T.; Wechsler, R., H.; Ricker, P., M.; others; Erickson, B.; Singh, R.; Evrard, A., E.; Becker, M., R.; Busha, M., T.; Kravtsov, A., V.; Marru, S.; Pierce, M.; and Wechsler, R., H. In American Astronomical Society Meeting Abstracts# 221, volume 221, pages 34, 2012.
bibtex
VOLUNTEER REVIEWERS. Abdelrahman, T., S.; Abramson, D.; Anderson, E.; Bartlett, R.; Becla, J.; Bernreuther, M.; Budavari, T.; Cagnoni, S.; Calvayrac, F.; Camelli, F.; and others Computing in Science & Engineering, 14: 87. 2012.
bibtex
E-DECIDER: experience developing earthquake disaster decision support and response tools. Glasscoe, M.; Donnellan, A.; Stough, T.; Parker, J.; Burl, M.; Granat, R.; Pierce, M.; Wang, J.; Ma, Y.; Rundle, J.; and others In 9th US-Japan Natural Resources Panel on Earthquake Research, 2012. Pasadena, CA: Jet Propulsion Laboratory, National Aeronautics and Space Administration, 2012.
E-DECIDER: experience developing earthquake disaster decision support and response tools [link]Website   bibtex
Building Scientific Workflows for the Geosciences with Open Community Software. Pierce, M., E.; Marru, S.; and Weerawarana, S., M. In AGU Fall Meeting Abstracts, 2012.
bibtex
Using service-based GIS to support earthquake research and disaster response. Wang, J.; Pierce, M.; Ma, Y.; Fox, G.; Donnellan, A.; Parker, J.; and Glasscoe, M. Computing in Science & Engineering, 14(5): 21-30. 2012.
bibtex
QuakeSim 2.0. Donnellan, A.; Parker, J., W.; Lyzenga, G., A.; Granat, R., A.; Norton, C., D.; Rundle, J., B.; Pierce, M., E.; Fox, G., C.; McLeod, D.; and Ludwig, L., G. Technical Report 2012.
QuakeSim 2.0 [link]Website   bibtex
Designing a Roadmap for Workflow Cyberinfrastructure in the Geosciences: From Big Data to the Long Tail. Gil, Y.; Deelman, E.; Demir, I.; Duffy, C.; Marru, S.; Pierce, M., E.; and Wiener, G. In AGU Fall Meeting Abstracts, 2012.
bibtex
ParamChem force field parametrization engine: Initial guess generation and dihedral parameter optimization. Vanommeslaeghe, K.; Shen, N.; Polani, N., K.; Fan, Y.; Ghosh, J.; Herath, C.; Marru, S.; Pierce, M.; Pamidighantam, S., V.; Sheetz, M.; and others In ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, volume 244, 2012.
bibtex
Multiple Stream Transfer Support in NaradaBrokering. Lim, S., B.; Kapla, A.; Pallickara, S.; Pierce, M.; and Fox, G. Journal of Convergence Information Technology, 7(9). 2012.
bibtex
QuakeSim: Integrated modeling and analysis of geologic and remotely sensed data. Donnellan, A.; Parker, J.; Granat, R.; De Jong, E.; Suzuki, S.; Pierce, M.; Fox, G.; Rundle, J.; McLeod, D.; Al-Ghanmi, R.; and others In Aerospace Conference, 2012 IEEE, pages 1-9, 2012.
bibtex
Ultrascan solution modeler: integrated hydrodynamic parameter and small angle scattering computation and fitting tools. Brookes, E.; Singh, R.; Pierce, M.; Marru, S.; Demeler, B.; and Rocco, M. In Proceedings of the 1st Conference of the Extreme Science and Engineering Discovery Environment: Bridging from the eXtreme to the campus and beyond, pages 42, 2012.
bibtex
Web service andworkflow abstractions to large scale nuclear physics calculations. Herath, C.; Liu, F.; Marru, S.; Gunathilake, L.; Sosonkina, M.; Vary, J., P.; Maris, P.; and Pierce, M. In Services Computing (SCC), 2012 IEEE Ninth International Conference on, pages 703-710, 2012.
bibtex
Using UAVSAR to Estimate Creep Along the Superstition Hills Fault, Southern California. Donnellan, A.; Parker, J., W.; Pierce, M.; and Wang, J. In AGU Fall Meeting Abstracts, 2012.
bibtex
A Workflows Roadmap for the Geosciences. Gil, Y.; Deelman, E.; Demir, I.; Duffy, C.; Marru, S.; Altintas, I.; Pierce, M., E.; Wiener, G.; Braeckel, A.; Browdy, S., F.; and others Technical Report 2012.
bibtex
Simplex GPS and InSAR Inversion Software. Donnellan, A.; Parker, J., W.; Lyzenga, G., A.; and Pierce, M., E. Technical Report 2012.
bibtex
Web service and workflow abstractions to large scale nuclear physics calculations. Herath, C.; Liu, F.; Marru, S.; Gunathilake, L.; Sosonkina, M.; Vary, J., P.; Maris, P.; and Pierce, M. In Proceedings - 2012 IEEE 9th International Conference on Services Computing, SCC 2012, pages 703-710, 2012.
Web service and workflow abstractions to large scale nuclear physics calculations [link]Website   bibtex   abstract