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  2023 (16)
NGLY1 mutations cause protein aggregation in human neurons. Manole, A., Wong, T., Rhee, A., Novak, S., Chin, S., Tsimring, K., Paucar, A., Williams, A., Newmeyer, T. F., Schafer, S. T, & others Cell Reports, 42(12). 2023.
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Large-scale annotated dataset for cochlear hair cell detection and classification. Buswinka, C. J, Rosenberg, D. B, Simikyan, R. G, Osgood, R. T, Fernandez, K., Nitta, H., Hayashi, Y., Liberman, L. W, Nguyen, E., Yildiz, E., & others bioRxiv. 2023.
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Long-term NAD+ supplementation prevents the progression of age-related hearing loss in mice. Okur, M. N., Sahbaz, B. D., Kimura, R., Manor, U., Patel, J., Park, J., Andrade, L., Puligilla, C., Croteau, D. L., & Bohr, V. A. Aging Cell,1474–9718. 2023.
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Altered Fhod3 Expression Involved in Progressive High-Frequency Hearing Loss via Dysregulation of Actin Polymerization Stoichiometry in The Cuticular Plate. Boussaty, E. C., Ninoyu, Y., Andrade, L., Li, Q., Takeya, R., Sumimoto, H., Ohyama, T., Wahlin, K. J, Manor, U., & Friedman, R. A bioRxiv,2023–07. 2023.
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Mitochondria- and ER-associated actin are required for mitochondrial fusion. Gatti, P., Schiavon, C., Manor, U., & Germain, M. bioRxiv. 2023.
Mitochondria- and ER-associated actin are required for mitochondrial fusion [link]Paper   doi   link   bibtex   abstract   16 downloads  
Attenuation of Age-Related Hearing Impairment in Senescence-Accelerated Mouse Prone 8 (SAMP8) Mice Treated with Fatty Acid Synthase Inhibitor CMS121. Pham, T. B., Boussaty, E. C., Currais, A., Maher, P., Schubert, D. R., Manor, U., & Friedman, R. A. Journal of Molecular Neuroscience, 73(4): 307-315. May 2023.
Attenuation of Age-Related Hearing Impairment in Senescence-Accelerated Mouse Prone 8 (SAMP8) Mice Treated with Fatty Acid Synthase Inhibitor CMS121 [link]Paper   doi   link   bibtex   abstract   2 downloads  
Induction of lysosomal and mitochondrial biogenesis by AMPK phosphorylation of FNIP1. Malik, N., Ferreira, B. I., Hollstein, P. E., Curtis, S. D., Trefts, E., Novak, S. W., Yu, J., Gilson, R., Hellberg, K., Fang, L., Sheridan, A., Hah, N., Shadel, G. S., Manor, U., & Shaw, R. J. Science, 380(6642): eabj5559. 2023.
Induction of lysosomal and mitochondrial biogenesis by AMPK phosphorylation of FNIP1 [link]Paper   doi   link   bibtex   abstract   1 download  
Violation of the ultrastructural size principle in the dorsolateral prefrontal cortex underlies working memory impairment in the aged common marmoset (Callithrix jacchus). Glavis-Bloom, C., Vanderlip, C. R., Weiser Novak, S., Kuwajima, M., Kirk, L., Harris, K. M., Manor, U., & Reynolds, J. H. Frontiers in Aging Neuroscience, 15. 2023.
Violation of the ultrastructural size principle in the dorsolateral prefrontal cortex underlies working memory impairment in the aged common marmoset (Callithrix jacchus) [link]Paper   doi   link   bibtex   abstract  
Oligodendrocyte calcium signaling sculpts myelin sheath morphology. Iyer, M., Kantarci, H., Ambiel, N., Novak, S. W., Andrade, L. R., Lam, M., Münch, A. E., Yu, X., Khakh, B. S., Manor, U., & Zuchero, J. B. bioRxiv. 2023.
Oligodendrocyte calcium signaling sculpts myelin sheath morphology [link]Paper   doi   link   bibtex   abstract   2 downloads  
Roadmap on Deep Learning for Microscopy. Volpe, G., Wählby, C., Tian, L., Hecht, M., Yakimovich, A., Monakhova, K., Waller, L., Sbalzarini, I. F., Metzler, C. A., Xie, M., Zhang, K., Lenton, I. C. D., Rubinsztein-Dunlop, H., Brunner, D., Bai, B., Ozcan, A., Midtvedt, D., Wang, H., Sladoje, N., Lindblad, J., Smith, J. T., Ochoa, M., Barroso, M., Intes, X., Qiu, T., Yu, L., You, S., Liu, Y., Ziatdinov, M. A., Kalinin, S. V., Sheridan, A., Manor, U., Nehme, E., Goldenberg, O., Shechtman, Y., Moberg, H. K., Langhammer, C., Špačková, B., Helgadottir, S., Midtvedt, B., Argun, A., Thalheim, T., Cichos, F., Bo, S., Hubatsch, L., Pineda, J., Manzo, C., Bachimanchi, H., Selander, E., Homs-Corbera, A., Fränzl, M., de Haan, K., Rivenson, Y., Korczak, Z., Adiels, C. B., Mijalkov, M., Veréb, D., Chang, Y., Pereira, J. B., Matuszewski, D., Kylberg, G., Sintorn, I., Caicedo, J. C., Cimini, B. A, Bell, M. A. L., Saraiva, B. M., Jacquemet, G., Henriques, R., Ouyang, W., Le, T., Gómez-de-Mariscal, E., Sage, D., Muñoz-Barrutia, A., Lindqvist, E. J., & Bergman, J. . 2023.
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Biological research and self-driving labs in deep space supported by artificial intelligence. Sanders, L. M, Scott, R. T, Yang, J. H, Qutub, A. A., Garcia Martin, H., Berrios, D. C, Hastings, J. J A, Rask, J., Mackintosh, G., Hoarfrost, A. L, Chalk, S., Kalantari, J., Khezeli, K., Antonsen, E. L, Babdor, J., Barker, R., Baranzini, S. E, Beheshti, A., Delgado-Aparicio, G. M, Glicksberg, B. S, Greene, C. S, Haendel, M., Hamid, A. A, Heller, P., Jamieson, D., Jarvis, K. J, Komarova, S. V, Komorowski, M., Kothiyal, P., Mahabal, A., Manor, U., Mason, C. E, Matar, M., Mias, G. I, Miller, J., Myers, J. G, Nelson, C., Oribello, J., Park, S., Parsons-Wingerter, P., Prabhu, R K, Reynolds, R. J, Saravia-Butler, A., Saria, S., Sawyer, A., Singh, N. K., Snyder, M., Soboczenski, F., Soman, K., Theriot, C. A, Van Valen, D., Venkateswaran, K., Warren, L., Worthey, L., Zitnik, M., & Costes, S. V Technical Report 3, March 2023.
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Biomonitoring and precision health in deep space supported by artificial intelligence. Scott, R. T, Sanders, L. M, Antonsen, E. L, Hastings, J. J A, Park, S., Mackintosh, G., Reynolds, R. J, Hoarfrost, A. L, Sawyer, A., Greene, C. S, Glicksberg, B. S, Theriot, C. A, Berrios, D. C, Miller, J., Babdor, J., Barker, R., Baranzini, S. E, Beheshti, A., Chalk, S., Delgado-Aparicio, G. M, Haendel, M., Hamid, A. A, Heller, P., Jamieson, D., Jarvis, K. J, Kalantari, J., Khezeli, K., Komarova, S. V, Komorowski, M., Kothiyal, P., Mahabal, A., Manor, U., Garcia Martin, H., Mason, C. E, Matar, M., Mias, G. I, Myers, J. G, Nelson, C., Oribello, J., Parsons-Wingerter, P., Prabhu, R K, Qutub, A. A., Rask, J., Saravia-Butler, A., Saria, S., Singh, N. K., Snyder, M., Soboczenski, F., Soman, K., Van Valen, D., Venkateswaran, K., Warren, L., Worthey, L., Yang, J. H, Zitnik, M., & Costes, S. V Technical Report 3, March 2023.
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Cochlear transcriptome analysis of an outbred mouse population (CFW). Boussaty, E. C., Tedeschi, N., Novotny, M., Ninoyu, Y., Du, E., Draf, C., Zhang, Y., Manor, U., Scheuermann, R. H., & Friedman, R. bioRxiv. 2023.
Cochlear transcriptome analysis of an outbred mouse population (CFW) [link]Paper   doi   link   bibtex   abstract  
Obstructive Sleep Apnea–induced Endothelial Dysfunction Is Mediated by miR-210. Shang, F., Wang, S., Gongol, B., Han, S. Y., Cho, Y., Schiavon, C. R., Chen, L., Xing, Y., Zhao, Y., Ning, M., Guo, X., He, F., Lei, Y., Wang, L., Manor, U., Marin, T., Chou, K., He, M., Huang, P., Shyy, J. Y., & Malhotra, A. American Journal of Respiratory and Critical Care Medicine, 207(3): 323-335. 2023. PMID: 36191258
Obstructive Sleep Apnea–induced Endothelial Dysfunction Is Mediated by miR-210 [link]Paper   doi   link   bibtex   abstract  
Mutant Prion Protein Endoggresomes are Hubs for Local Axonal Organelle-Cytoskeletal Remodeling. Chaiamarit, T., Verhelle, A., Chassefeyre, R., Shukla, N., Novak, S. W., Andrade, L. R., Manor, U., & Encalada, S. E. bioRxiv. 2023.
Mutant Prion Protein Endoggresomes are Hubs for Local Axonal Organelle-Cytoskeletal Remodeling [link]Paper   doi   link   bibtex   abstract   1 download  
Astrocyte glypican 5 regulates synapse maturation and stabilization. Bosworth, A., Contreras, M, Novak, S W., Sancho, L, Salas, I., Manor, U, & Allen, N. bioRxiv. 2023.
Astrocyte glypican 5 regulates synapse maturation and stabilization [link]Paper   doi   link   bibtex   abstract  
  2022 (10)
Local shape descriptors for neuron segmentation. Sheridan, A., Nguyen, T. M., Deb, D., Lee, W. A., Saalfeld, S., Turaga, S. C., Manor, U., & Funke, J. Nature Methods. December 2022.
Local shape descriptors for neuron segmentation [link]Paper   doi   link   bibtex   1 download  
INF2-mediated actin filament reorganization confers intrinsic resilience to neuronal ischemic injury. Calabrese, B., Jones, S. L, Shiraishi-Yamaguchi, Y., Lingelbach, M., Manor, U., Svitkina, T. M, Higgs, H. N, Shih, A. Y, & Halpain, S. Nature Communications, 13(1): 6037. 2022.
INF2-mediated actin filament reorganization confers intrinsic resilience to neuronal ischemic injury [link]Paper   doi   link   bibtex   abstract  
Exploring the role of image domain in self-supervised DNN models of rodent brains. Prasad, A., Manor, U., & Pereira, T. In SVRHM 2022 Workshop @ NeurIPS , 2022.
Exploring the role of image domain in self-supervised DNN models of rodent brains [link]Paper   link   bibtex  
A Nesprin-4/kinesin-1 cargo model for nuclear positioning in cochlear outer hair cells. Taiber, S., Gozlan, O., Cohen, R., Andrade, L. R., Gregory, E. F., Starr, D. A., Moran, Y., Hipp, R., Kelley, M. W., Manor, U., Sprinzak, D., & Avraham, K. B. Frontiers in Cell and Developmental Biology, 10. 2022.
A Nesprin-4/kinesin-1 cargo model for nuclear positioning in cochlear outer hair cells [link]Paper   doi   link   bibtex   abstract   1 download  
AAV-mediated rescue of Eps8 expression in vivo restores hair-cell function in a mouse model of recessive deafness. Jeng, J., Carlton, A. J, Goodyear, R. J, Chinowsky, C., Ceriani, F., Johnson, S. L, Sung, T., Dayn, Y., Richardson, G. P, Bowl, M. R, Brown, S. D M, Manor, U., & Marcotti, W. Molecular Therapy - Methods & Clinical Development, 26: 355–370. sep 2022.
AAV-mediated rescue of <em>Eps8</em> expression <em>in&#xa0;vivo</em> restores hair-cell function in a mouse model of recessive deafness [link]Paper   doi   link   bibtex   abstract  
Cochlear ribbon synapse maturation requires Nlgn1 and Nlgn3. Ramirez, M. A., Ninoyu, Y., Miller, C., Andrade, L. R., Edassery, S., Bomba-Warczak, E., Ortega, B., Manor, U., Rutherford, M. A., Friedman, R. A., & Savas, J. N. iScience, 25(8): 104803. 2022.
Cochlear ribbon synapse maturation requires Nlgn1 and Nlgn3 [link]Paper   doi   link   bibtex   abstract  
Metaplasia-induced Epithelial Heterogeneity Directs Pancreatic Injury and Tumorigenesis. DelGiorno, K., Ma, Z., Lytle, N., Chen, B., Jyotsana, N., Weiser Novak, S., Cho, C., Caplan, L., Ben-Levy, O., Neininger, A., Burnette, D., Trinh, V., Tan, M., Manor, U., Mills, J., Goldenring, J., Lau, K., & Wahl, G. The FASEB Journal, 36(S1). 2022.
Metaplasia-induced Epithelial Heterogeneity Directs Pancreatic Injury and Tumorigenesis [link]Paper   doi   link   bibtex   abstract   1 download  
Single-Cell Transcriptomics Reveals a Conserved Metaplasia Program in Pancreatic Injury. Ma, Z., Lytle, N. K., Chen, B., Jyotsana, N., Novak, S. W., Cho, C. J., Caplan, L., Ben-Levy, O., Neininger, A. C., Burnette, D. T., Trinh, V. Q., Tan, M. C., Patterson, E. A., Arrojo e Drigo, R., Giraddi, R. R., Ramos, C., Means, A. L., Matsumoto, I., Manor, U., Mills, J. C., Goldenring, J. R., Lau, K. S., Wahl, G. M., & DelGiorno, K. E. Gastroenterology, 162(2): 604-620.e20. 2022.
Single-Cell Transcriptomics Reveals a Conserved Metaplasia Program in Pancreatic Injury [link]Paper   doi   link   bibtex   abstract  
Endosomal removal and disposal of dysfunctional, immunostimulatory mitochondrial DNA. Newman, L. E., Tadepalle, N., Novak, S. W., Schiavon, C. R., Rojas, G. R., Chevez, J. A., Lemersal, I., Medina, M., Rocha, S., Towers, C. G., Grotjahn, D. A., Manor, U., & Shadel, G. S. bioRxiv. 2022.
Endosomal removal and disposal of dysfunctional, immunostimulatory mitochondrial DNA [link]Paper   doi   link   bibtex   abstract  
Long-term NAD+ supplementation prevents the progression of age-related hearing loss in mice. Okur, M. N., Kimura, R., Sahbaz, B. D., Manor, U., Patel, J., Andrade, L., Puligilla, K., Croteau, D. L., & Bohr, V. A. bioRxiv. 2022.
Long-term NAD+ supplementation prevents the progression of age-related hearing loss in mice [link]Paper   doi   link   bibtex   abstract  
  2021 (9)
Endosomal sorting drives the formation of axonal prion protein endoggresomes. Chassefeyre, R., Chaiamarit, T., Verhelle, A., Novak, S. W., Andrade, L. R., Leitão, A. D. G., Manor, U., & Encalada, S. E. Science Advances, 7(52): eabg3693. 2021.
Endosomal sorting drives the formation of axonal prion protein endoggresomes [link]Paper   doi   link   bibtex   abstract  
Content-aware frame interpolation (CAFI): Deep Learning-based temporal super-resolution for fast bioimaging. Priessner, M., Gaboriau, D. C., Sheridan, A., Lenn, T., Chubb, J. R., Manor, U., Vilar, R., & Laine, R. F. bioRxiv. 2021.
Content-aware frame interpolation (CAFI): Deep Learning-based temporal super-resolution for fast bioimaging [link]Paper   doi   link   bibtex   abstract  
The San Diego Nathan Shock Center: tackling the heterogeneity of aging. Shadel, G. S, Adams, P. D, Berggren, W T., Diedrich, J. K, Diffenderfer, K. E, Gage, F. H, Hah, N., Hansen, M., Hetzer, M. W, Molina, A. J A, Manor, U., Marek, K., O'Keefe, D. D, Pinto, A. F M, Sacco, A., Sharpee, T. O, Shokriev, M. N, & Zambetti, S. GeroScience, 43(5): 2139–2148. 2021.
The San Diego Nathan Shock Center: tackling the heterogeneity of aging [link]Paper   doi   link   bibtex   abstract  
Biologists need modern data infrastructure on campus. Andreev, A., Morrell, T., Briney, K., Gesing, S., & Manor, U. 2021.
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SARS-CoV-2 Spike Protein Impairs Endothelial Function via Downregulation of ACE 2. Lei, Y., Zhang, J., Schiavon, C. R., He, M., Chen, L., Shen, H., Zhang, Y., Yin, Q., Cho, Y., Andrade, L., Shadel, G. S., Hepokoski, M., Lei, T., Wang, H., Zhang, J., Yuan, J. X., Malhotra, A., Manor, U., Wang, S., Yuan, Z., & Shyy, J. Y. Circulation Research, 128(9): 1323-1326. 2021.
SARS-CoV-2 Spike Protein Impairs Endothelial Function via Downregulation of ACE 2 [link]Paper   doi   link   bibtex  
Impaired Mitochondrial Mobility in Charcot-Marie-Tooth Disease. Schiavon, C. R., Shadel, G. S., & Manor, U. Frontiers in Cell and Developmental Biology, 9. 2021.
Impaired Mitochondrial Mobility in Charcot-Marie-Tooth Disease [link]Paper   doi   link   bibtex   abstract  
Machine Learning, Artificial Intelligence and Data Modeling for the Next Decade of Space Biology Research and Astronaut Health Support. Antonsen, E., Babdor, J., Baranzini, S. E, Barker, R., Beheshti, A., Berrios, D. C, Chalk, S., Delgado-Aparicio, G. M, Martin, H. G., Glicksberg, B. S, Greene, C. S, Haendel, M., Hamid, A. A, Hastings, J. J., Heller, P., Hoarfrost, A., Jamieson, D., Jarvis, K. J, Kalantari, J., Khezeli, K., Komarova, S. V, Komorowski, M., Kothiyal, P., Mahabal, A., Manor, U., Matar, M., Mias, G. I, Miller, J., Jr, J. G M., Nelson, C., Oribello, J., Park, S., Parsons-Wingerter, P., Prabhu, R., Qutub, A. A., Rask, J., Reynolds, R. J, Saravia-Butler, A., Saria, S., Sawyer, A. J, Singh, N. K., Soboczenski, F., Snyder, M., Soman, K., Theriot, C. A, Valen, D. V., Warren, L., Worthey, L., Yang, J. H, & Zitnik, M. Technical Report NASA, 2021.
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Dynamic regulation of CTCF stability and sub-nuclear localization in response to stress. Lehman, B. J. A. L., Fernando J. AND Santisakultarm, T. P. A. F., Linjing AND Shokhirev, M. N. A. D., & Kenneth E. AND Manor, U. A. E. PLOS Genetics, 17(1): 1-34. 01 2021.
Dynamic regulation of CTCF stability and sub-nuclear localization in response to stress [link]Paper   doi   link   bibtex   abstract  
SARS-COV-2 SPIKE PROTEIN IMPAIRMENT OF ENDOTHELIAL FUNCTION DOES NOT IMPACT VACCINE SAFETY. 2021.
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  2020 (7)
Tuft Cells Inhibit Pancreatic Tumorigenesis in Mice by Producing Prostaglandin D2. DelGiorno, K. E., Chung, C., Vavinskaya, V., Maurer, H. C., Novak, S. W., Lytle, N. K., Ma, Z., Giraddi, R. R., Wang, D., Fang, L., Naeem, R. F., Andrade, L. R., Ali, W. H., Tseng, H., Tsui, C., Gubbala, V. B., Ridinger-Saison, M., Ohmoto, M., Erikson, G. A., O’Connor, C., Shokhirev, M. N., Hah, N., Urade, Y., Matsumoto, I., Kaech, S. M., Singh, P. K., Manor, U., Olive, K. P., & Wahl, G. M. Gastroenterology, 159(5): 1866-1881.e8. 2020.
Tuft Cells Inhibit Pancreatic Tumorigenesis in Mice by Producing Prostaglandin D2 [link]Paper   doi   link   bibtex   abstract  
Actin chromobody imaging reveals sub-organellar actin dynamics. Schiavon, C. R, Zhang, T., Zhao, B., Moore, A. S, Wales, P., Andrade, L. R, Wu, M., Sung, T., Dayn, Y., Feng, J. W, Quintero, O. A, Shadel, G. S, Grosse, R., & Manor, U. Nature Methods, 17(9): 917–921. 2020.
Actin chromobody imaging reveals sub-organellar actin dynamics [link]Paper   doi   link   bibtex   abstract   3 downloads  
Auxin-induced signaling protein nanoclustering contributes to cell polarity formation. Pan, X., Fang, L., Liu, J., Senay-Aras, B., Lin, W., Zheng, S., Zhang, T., Guo, J., Manor, U., Van Norman, J., Chen, W., & Yang, Z. Nature Communications, 11(1): 3914. 2020.
Auxin-induced signaling protein nanoclustering contributes to cell polarity formation [link]Paper   doi   link   bibtex   abstract  
The Genetics of Variation of the Wave 1 Amplitude of the Mouse Auditory Brainstem Response. Boussaty, E. C., Gillard, D., Lavinsky, J., Salehi, P., Wang, J., Mendonça, A., Allayee, H., Manor, U., & Friedman, R. A. Journal of the Association for Research in Otolaryngology, 21(4): 323–336. 2020.
The Genetics of Variation of the Wave 1 Amplitude of the Mouse Auditory Brainstem Response [link]Paper   doi   link   bibtex   abstract  
Cysteine depletion induces pancreatic tumor ferroptosis in mice. Badgley, M. A., Kremer, D. M., Maurer, H. C., DelGiorno, K. E., Lee, H., Purohit, V., Sagalovskiy, I. R., Ma, A., Kapilian, J., Firl, C. E. M., Decker, A. R., Sastra, S. A., Palermo, C. F., Andrade, L. R., Sajjakulnukit, P., Zhang, L., Tolstyka, Z. P., Hirschhorn, T., Lamb, C., Liu, T., Gu, W., Seeley, E. S., Stone, E., Georgiou, G., Manor, U., Iuga, A., Wahl, G. M., Stockwell, B. R., Lyssiotis, C. A., & Olive, K. P. Science, 368(6486): 85-89. 2020.
Cysteine depletion induces pancreatic tumor ferroptosis in mice [link]Paper   doi   link   bibtex   abstract  
Tuft Cell Formation Reflects Epithelial Plasticity in Pancreatic Injury: Implications for Modeling Human Pancreatitis. DelGiorno, K. E., Naeem, R. F., Fang, L., Chung, C., Ramos, C., Luhtala, N., O’Connor, C., Hunter, T., Manor, U., & Wahl, G. M. Frontiers in Physiology, 11. 2020.
Tuft Cell Formation Reflects Epithelial Plasticity in Pancreatic Injury: Implications for Modeling Human Pancreatitis [link]Paper   doi   link   bibtex   abstract  
13. Manor, U. Organelle–Organelle Contacts, pages 151-159. John Wiley & Sons, Ltd, 2020.
Organelle–Organelle Contacts [link]Paper   doi   link   bibtex   abstract  
  2019 (8)
Deep Learning-Based Point-Scanning Super-Resolution Imaging. Fang, L., Monroe, F., Novak, S. W., Kirk, L., Schiavon, C. R., Yu, S. B., Zhang, T., Wu, M., Kastner, K., Kubota, Y., Zhang, Z., Pekkurnaz, G., Mendenhall, J., Harris, K., Howard, J., & Manor, U. bioRxiv. 2019.
Deep Learning-Based Point-Scanning Super-Resolution Imaging [link]Paper   doi   link   bibtex   abstract   2 downloads  
Tuft cells restrain pancreatic tumorigenesis through paracrine eicosanoid signaling. DelGiorno, K. E., Chung, C., Mauer, H. C., Novak, S. W., Giraddi, R. R., Wang, D., Naeem, R. F., Fang, L., Andrade, L. R., Lytle, N. K., Ali, W. H., Tsui, C., Gubbala, V. B., Ridinger-Saison, M., Ohmoto, M., O\textquoterightConnor, C., Erikson, G. A., Shokhirev, M. N., Urade, Y., Matsumoto, I., Vavinskaya, V., Singh, P. K., Manor, U., Olive, K. P., & Wahl, G. M. bioRxiv. 2019.
Tuft cells restrain pancreatic tumorigenesis through paracrine eicosanoid signaling [link]Paper   doi   link   bibtex   abstract  
Regulation of the ER stress response by a mitochondrial microprotein. Chu, Q., Martinez, T. F, Novak, S. W., Donaldson, C. J, Tan, D., Vaughan, J. M, Chang, T., Diedrich, J. K, Andrade, L., Kim, A., Zhang, T., Manor, U., & Saghatelian, A. Nature Communications, 10(1): 4883. 2019.
Regulation of the ER stress response by a mitochondrial microprotein [link]Paper   doi   link   bibtex   abstract  
Abstract 5169: Pancreatic tumorigenesis evokes mechanisms of tissue injury and repair. DelGiorno, K. E., Chung, C., Giraddi, R., Ke, E., Maurer, H. C., Ridinger-Saison, M., Ali, W. H., Tsui, C., Ramos, C., Naeem, R., Ohmoto, M., Fang, L., Luna, G., Fitzpatrick, C., O'Connor, C., Manor, U., Matsumoto, I., Olive, K. P., & Wahl, G. M. Cancer Research, 79(13_Supplement): 5169-5169. 07 2019.
Abstract 5169: Pancreatic tumorigenesis evokes mechanisms of tissue injury and repair [link]Paper   doi   link   bibtex   abstract  
Time-restricted feeding restores muscle function in Drosophila models of obesity and circadian-rhythm disruption. Villanueva, J. E, Livelo, C., Trujillo, A. S, Chandran, S., Woodworth, B., Andrade, L., Le, H. D, Manor, U., Panda, S., & Melkani, G. C Nature Communications, 10(1): 2700. 2019.
Time-restricted feeding restores muscle function in Drosophila models of obesity and circadian-rhythm disruption [link]Paper   doi   link   bibtex   abstract  
A novel role for Myosin-Va in mitochondrial fission. Araujo, J. S, Silva-Junior, R. M P, Zhang, T., Schiavon, C. R, Chu, Q., Wu, M., Pontes, C. L S, Souza, A. O, Alberici, L. C, Santos, A. M, Ingle, S. B., Saghatelian, A., Spudich, J., Manor, U., & Espreafico, E. M bioRxiv. 2019.
A novel role for Myosin-Va in mitochondrial fission [link]Paper   doi   link   bibtex   abstract  
Targeting LIF-mediated paracrine interaction for pancreatic cancer therapy and monitoring. Shi, Y., Gao, W., Lytle, N. K, Huang, P., Yuan, X., Dann, A. M, Ridinger-Saison, M., DelGiorno, K. E, Antal, C. E, Liang, G., Atkins, A. R, Erikson, G., Sun, H., Meisenhelder, J., Terenziani, E., Woo, G., Fang, L., Santisakultarm, T. P, Manor, U., Xu, R., Becerra, C. R, Borazanci, E., Von Hoff, D. D, Grandgenett, P. M, Hollingsworth, M. A, Leblanc, M., Umetsu, S. E, Collisson, E. A, Scadeng, M., Lowy, A. M, Donahue, T. R, Reya, T., Downes, M., Evans, R. M, Wahl, G. M, Pawson, T., Tian, R., & Hunter, T. Nature, 569(7754): 131–135. 2019.
Targeting LIF-mediated paracrine interaction for pancreatic cancer therapy and monitoring [link]Paper   doi   link   bibtex   abstract  
Decrappification, deoldification, and super resolution. Antic, J., Howard, J., & Manor, U. In Facebook f8 conference, pages 1, 2019.
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  2018 (1)
FanStore: Enabling Efficient and Scalable I/O for Distributed Deep Learning. Zhang, Z., Huang, L., Manor, U., Fang, L., Merlo, G., Michoski, C., Cazes, J., & Gaffney, N. 2018.
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  2017 (3)
Actin Cytoskeleton-Mediated Constriction of Membrane Organelles via Endoplasmic Reticulum Scaffolding. Curchoe, C. L., & Manor, U. ACS Biomaterials Science & Engineering, 3(11): 2727-2732. 2017.
Actin Cytoskeleton-Mediated Constriction of Membrane Organelles via Endoplasmic Reticulum Scaffolding [link]Paper   doi   link   bibtex   abstract  
In Vivo Ribbon Mobility and Turnover of Ribeye at Zebrafish Hair Cell Synapses. Graydon, C. W, Manor, U., & Kindt, K. S Scientific Reports, 7(1): 7467. 2017.
In Vivo Ribbon Mobility and Turnover of Ribeye at Zebrafish Hair Cell Synapses [link]Paper   doi   link   bibtex   abstract  
Sonic hedgehog pathway activation increases mitochondrial abundance and activity in hippocampal neurons. Yao, P. J., Manor, U., Petralia, R. S., Brose, R. D., Wu, R. T. Y., Ott, C., Wang, Y., Charnoff, A., Lippincott-Schwartz, J., & Mattson, M. P. Molecular Biology of the Cell, 28(3): 387-395. 2017. PMID: 27932496
Sonic hedgehog pathway activation increases mitochondrial abundance and activity in hippocampal neurons [link]Paper   doi   link   bibtex   abstract  
  2016 (2)
Tectorins crosslink type II collagen fibrils and connect the tectorial membrane to the spiral limbus. Andrade, L. R., Salles, F. T., Grati, M., Manor, U., & Kachar, B. Journal of Structural Biology, 194(2): 139-146. 2016.
Tectorins crosslink type II collagen fibrils and connect the tectorial membrane to the spiral limbus [link]Paper   doi   link   bibtex   abstract  
Intravital Imaging Reveals Ghost Fibers as Architectural Units Guiding Myogenic Progenitors during Regeneration. Webster, M., Manor, U., Lippincott-Schwartz, J., & Fan, C. Cell Stem Cell, 18(2): 243-252. 2016.
Intravital Imaging Reveals Ghost Fibers as Architectural Units Guiding Myogenic Progenitors during Regeneration [link]Paper   doi   link   bibtex   abstract  
  2015 (2)
A mitochondria-anchored isoform of the actin-nucleating spire protein regulates mitochondrial division. Manor, U., Bartholomew, S., Golani, G., Christenson, E., Kozlov, M., Higgs, H., Spudich, J., & Lippincott-Schwartz, J. eLife, 4: e08828. aug 2015.
A mitochondria-anchored isoform of the actin-nucleating spire protein regulates mitochondrial division [link]Paper   doi   link   bibtex   abstract   1 download  
A Biophysical Model for the Staircase Geometry of Stereocilia. Orly, G. A. M., & Uri AND Gov, N. S. PLOS ONE, 10(7): 1-13. 07 2015.
A Biophysical Model for the Staircase Geometry of Stereocilia [link]Paper   doi   link   bibtex   abstract  
  2013 (3)
Myosin 3A Kinase Activity Is Regulated by Phosphorylation of the Kinase Domain Activation Loop *. Quintero, O. A, Unrath, W. C, Stevens Jr., S. M, Manor, U., Kachar, B., & Yengo, C. M Journal of Biological Chemistry, 288(52): 37126–37137. dec 2013.
Myosin 3A Kinase Activity Is Regulated by Phosphorylation of the Kinase Domain Activation Loop * [link]Paper   doi   link   bibtex   abstract  
Linking actin networks and cell membrane via a reaction-diffusion-elastic description of nonlinear filopodia initiation. Ben Isaac, E., Manor, U., Kachar, B., Yochelis, A., & Gov, N. S. Phys. Rev. E, 88: 022718. Aug 2013.
Linking actin networks and cell membrane via a reaction-diffusion-elastic description of nonlinear filopodia initiation [link]Paper   doi   link   bibtex  
Progressive hearing loss and gradual deterioration of sensory hair bundles in the ears of mice lacking the actin-binding protein Eps8L2. Furness, D. N., Johnson, S. L., Manor, U., Rüttiger, L., Tocchetti, A., Offenhauser, N., Olt, J., Goodyear, R. J., Vijayakumar, S., Dai, Y., Hackney, C. M., Franz, C., Fiore, P. P. D., Masetto, S., Jones, S. M., Knipper, M., Holley, M. C., Richardson, G. P., Kachar, B., & Marcotti, W. Proceedings of the National Academy of Sciences, 110(34): 13898-13903. 2013.
Progressive hearing loss and gradual deterioration of sensory hair bundles in the ears of mice lacking the actin-binding protein Eps8L2 [link]Paper   doi   link   bibtex   abstract  
  2012 (2)
Competition and compensation. Manor, U., Grati, M., Yengo, C. M., Kachar, B., & Gov, N. S. BioArchitecture, 2(5): 171-174. 2012. PMID: 22954581
Competition and compensation [link]Paper   doi   link   bibtex   abstract  
Myosin IIIB uses an actin-binding motif in its espin-1 cargo to reach the tips of actin protrusions. Merritt, R. C, Manor, U., Salles, F. T, Grati, M., Dose, A. C, Unrath, W. C, Quintero, O. A, Yengo, C. M, & Kachar, B. Current biology, 22(4): 320–325. 2012.
link   bibtex   abstract  
  2011 (2)
Regulation of Stereocilia Length by Myosin XVa and Whirlin Depends on the Actin-Regulatory Protein Eps8. Manor, U., Disanza, A., Grati, M., Andrade, L., Lin, H., Di Fiore, P. P., Scita, G., & Kachar, B. Current Biology, 21(2): 167–172. jan 2011.
Regulation of Stereocilia Length by Myosin XVa and Whirlin Depends on the Actin-Regulatory Protein Eps8 [link]Paper   doi   link   bibtex   abstract  
Dynamic regulation of stereocilia length by unconventional myosins and their actin-regulatory cargo. Manor, U. Ph.D. Thesis, The Johns Hopkins University, 2011.
Dynamic regulation of stereocilia length by unconventional myosins and their actin-regulatory cargo [link]Paper   link   bibtex  
  2010 (1)
Intermolecular Autophosphorylation Regulates Myosin IIIa Activity and Localization in Parallel Actin Bundles *. Quintero, O. A, Moore, J. E, Unrath, W. C, Manor, U., Salles, F. T, Grati, M., Kachar, B., & Yengo, C. M Journal of Biological Chemistry, 285(46): 35770–35782. nov 2010.
Intermolecular Autophosphorylation Regulates Myosin IIIa Activity and Localization in Parallel Actin Bundles *<sup></sup> [link]Paper   doi   link   bibtex   abstract  
  2009 (1)
Myosin IIIa boosts elongation of stereocilia by transporting espin 1 to the plus ends of actin filaments. Salles, F. T, Merritt, R. C, Manor, U., Dougherty, G. W, Sousa, A. D, Moore, J. E, Yengo, C. M, Dosé, A. C, & Kachar, B. Nature Cell Biology, 11(4): 443–450. 2009.
Myosin IIIa boosts elongation of stereocilia by transporting espin 1 to the plus ends of actin filaments [link]Paper   doi   link   bibtex   abstract  
  2008 (3)
Protein Localization by Actin Treadmilling and Molecular Motors Regulates Stereocilia Shape and Treadmilling Rate. Naoz, M., Manor, U., Sakaguchi, H., Kachar, B., & Gov, N. S Biophysical Journal, 95(12): 5706–5718. dec 2008.
Protein Localization by Actin Treadmilling and Molecular Motors Regulates Stereocilia Shape and Treadmilling Rate [link]Paper   doi   link   bibtex   abstract  
Dynamic length regulation of sensory stereocilia. Manor, U., & Kachar, B. Seminars in Cell & Developmental Biology, 19(6): 502-510. 2008. Controlling Size Within Cells Plant Development and Chromatin
Dynamic length regulation of sensory stereocilia [link]Paper   doi   link   bibtex   abstract  
Quantification of co-occurring reaction rates in deep subseafloor sediments. Wang, G., Spivack, A. J., Rutherford, S., Manor, U., & D’Hondt, S. Geochimica et Cosmochimica Acta, 72(14): 3479-3488. 2008.
Quantification of co-occurring reaction rates in deep subseafloor sediments [link]Paper   doi   link   bibtex   abstract  
  2004 (1)
An Improved Numerical Model For Determining Chemical Reaction Rates. Manor, U., & Rutherford, S. SURFO Technical Report, 01: 52. 2004.
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