@inproceedings{brinkley-etal-iui-2023,
  title = {Reproducibility as a Stepping Stone to Intelligent Assistants for Data Analysis: Recreating a Study of Physical Activity, Sleep, and Work Shift in Nurses},
  author = {Detravious J. Brinkley and Emmanuel Johnson and Tiantian Feng and Yolanda Gil},
  booktitle = {Proceedings of the 28th Annual ACM Conference on Intelligent User Interfaces (IUI)},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/brikley-etal-iui-2023.pdf},
  year = 2023
}  

@incollection{gil-chapter-23, 
  title = {Towards Reflection Competencies in Intelligent Systems for Science},
  author = {Yolanda Gil},
  year      = {2023},
  booktitle = {Artificial Intelligence for Science: A Deep Learning Revolution}, 
  editors = {Alok Choudhary and Geoffrey Fox and Tony Hey}, 
  publisher = {World Scientific, London, UK},
  ee = {https://doi.org/10.1142/13123},
    url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/Gil-Chapter-2023.pdf}
}

@article{schaffhauser-etal-cgj23,
  title =  {A Framework for Broad Dissemination of Hydrological Models to Non-Expert Users},
  author = {Timo Schaffhauser and Daniel Garijo and Maximiliano Osorio and Daniel Bittner and Suzanne Pierce and Hernan Vargas and Markus Disse and Yolanda Gil},
  journal = {Computers and Geosciences},
  year = {2023}
}

@article{khider-etal-ppj22,
  title =  {Pyleoclim: Paleoclimate Timeseries Analysis and Visualization with Python},
  author = {Deborah Khider and Julien Emile-Geay and Feng Zhu and Alexander James and Jordan Landers and Varun Ratnakar and Yolanda Gil},
  journal = {Paleoceanography and Paleoclimatology},
  ee = {https://doi.org/10.1002/essoar.10511883.2},
  year = {2022}
}

@incollection{mookerjee-etal-gsa22, 
  title = {Cyberinfrastructure for collecting and integrating geology field data: Community priorities and research agenda},
  author = {Matty Mookerjee and Marjorie A. Chan and Yolanda Gil and Gurman Gill and Charles Goodwin 
and Terry L. Pavlis and Thomas F. Shipley and Taylor Swain and Basil Tikoff and Daniel Vieira},
  year      = {2022},
  booktitle = {Recent Advancements in Geoinformatics and Data Science: Geological Society of America Special Paper 558}, 
  editors = {Xiaogang Ma and Matty Mookerjee and Leslie Hsu and Denise Hills}, 
  publisher = {Geological Society of America},
  ee = {https://doi.org/10.1130/2022.2558(01)}
}

@inproceedings{gil-etal-cogsci-2022,
  title = {Towards Capturing Scientific Reasoning to Automate Data Analysis},
  author = {Yolanda Gil and Deborah Khider and Maximiliano Osorio and Varun Ratnakar and Hernan Vargas and Daniel Garijo and Suzanne Pierce},
  booktitle = {Proceedings of the 44th Annual Conference of the Cognitive Science Society (CogSci)},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-cogsci-2022.pdf},
  year = 2022
}  

@inproceedings{berhanu-etal-siaia-2022,
  title = {An AI Approach to Integrating Climate, Hydrology, and Agriculture Models},
  author = {Belete Berhanu and Ethiopia Bisrat and Yolanda Gil and Deborah Khider and Maximiliano Osorio and Varun Ratnakar and Hernan Vargas},
  booktitle = {Proceedings of the First International Workshop on Social Impact of AI for Africa (SIAIA), held at the 36th Annual Conference of the Association for the Advancement of Artificial Intelligence (AAAI-22)},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/berhanu-etal-siaia-2022.pdf},
  year = 2022
}  

@article{gil-aaai-presidentialaddress-2021,
  title =  {Will AI Write Scientific Papers in the Future?},
  author = {Yolanda Gil},
  journal = {AI Magazine},
  volume=42,
  number=4,
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-aaai-presidentialaddress-2021.pdf},
  ee = {https://doi.org/10.1609/aaai.12027},
  year = {2021}
}

@article{gil-hdsr2021,
  title =  {More Computing and Less Programming: A Proposal to Broaden Participation in Data Science},
  author = {Yolanda Gil},
  journal = {Harvard Data Science Review},
  volume=3,
  number=2,
  ee = {https://doi.org/10.1162/99608f92.e17f42f3},
  year = {2021}
}

@article{gil-etal-tiis2021,
  title = {Artificial Intelligence for Modeling Complex Systems: Taming the Complexity of Expert Models to Improve Decision Making},
  author = {Yolanda Gil and Daniel Garijo and Deborah Khider and Craig A. Knoblock and Varun Ratnakar and Maximiliano Osorio and Hern�n Vargas and Minh Pham and Jay Pujara and Basel Shbita and  Binh Vu and Yao-Yi Chiang and Dan Feldman and Yijun Lin and Hayley Song and Vipin Kumar and Ankush Khandelwal and Michael Steinbach and Kshitij Tayal and Shaoming Xu and Suzanne A. Pierce and Lissa Pearson and Daniel Hardesty-Lewis and Ewa Deelman and Rafael Ferreira da Silva and Rajiv Mayani and Armen R. Kemanian and Yuning Shi and Lorne Leonard and Scott Peckham and Maria Stoica and Kelly Cobourn and Zeya Zhang and Christopher Duffy and Lele Shu},
  journal = {ACM Transactions on Interactive Intelligent Systems (TiiS)},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-tiis2021.pdf},
  ee = {https://doi.org/10.1145/3453172},
  volume=11,
  number=2,
  year = 2021
}

@article{ahn-etal-can2021,
  title =  {Predicting Youth at High Risk of Aging Out of Foster Care using Machine Learning Methods},
  author = {Eunhye Ahn and Yolanda Gil and Emily Putnam-Horstein},
  journal = {Child Abuse and Neglect},
  volume=117,
  ee = {https://doi.org/10.1016/j.chiabu.2021.105059},
  year = {2021}
}

@inproceedings{khider-etal-milets20,
  title = {Towards Automating Time Series Analysis for the Paleogeosciences},
  author = {Deborah Khider and Pratheek Athreya and Varun Ratnakar and Yolanda Gil and Feng Zhu and Myron Kwan and Julien Emile-Geay},
  booktitle = {Proceedings of the Sixth Workshop on Mining and Learning from Time Series (MiLeTS), held in conjunction with the 26th ACM SIGKDD Conference on Knowledge Discovery and Datamining (KDD'20)},
  address = {San Diego, CA},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/khider-etal-milets20.pdf},
  year = 2020
}  

@article{goble-etal-20,
author = {Carole Goble, Sarah Cohen-Boulakia, Stian Soiland-Reyes, Daniel Garijo, Yolanda Gil, Michael R. Crusoe, Kristian Peters, Daniel Schoberhidden},
title = {FAIR Computational Workflows},
journal = {Data Intelligence, Special Issue on FAIR (Findable, Accessible, Interoperable and Reusable) Principles},
volume = {2},
number = {1-2},
doi = {10.1162/dint_a_00033},
ee = {http://doi.org/10.1162/dint_a_00033},
year = {2020}
}

@article {grasby-science20,
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	Colodro-Conde, Luc{\'\i}a and Bralten, Janita and Hibar, Derrek P. and 
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	Atkins, Joshua R. and Bernard, Manon and Brouwer, Rachel M. and 
	Buimer, Elizabeth E. L. and B{\"u}low, Robin and B{\"u}rger, Christian and 
	Cannon, Dara M. and Chakravarty, Mallar and Chen, Qiang and 
	Cheung, Joshua W. and Couvy-Duchesne, Baptiste and Dale, Anders M. and 
	Dalvie, Shareefa and de Araujo, T{\^a}nia K. and de Zubicaray, Greig I. and 
	de Zwarte, Sonja M. C. and den Braber, Anouk and Doan, Nhat Trung and 
	Dohm, Katharina and Ehrlich, Stefan and Engelbrecht, Hannah-Ruth and 
	Erk, Susanne and Fan, Chun Chieh and Fedko, Iryna O. and Foley, Sonya F. and 
	Ford, Judith M. and Fukunaga, Masaki and Garrett, Melanie E. and Ge, Tian and 
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}

@Article{Thompson-etal-tp2020,
title={ENIGMA and global neuroscience: A decade of large-scale studies of the brain in health and disease across more than 40 countries},
journal={Nature Translational Psychiatry},
year={2020},
volume={10},
number={1},
pages={100},
author={Thompson, Paul M.
and Jahanshad, Neda
and Ching, Christopher R. K.
and Salminen, Lauren E.
and Thomopoulos, Sophia I.
and Bright, Joanna
and Baune, Bernhard T.
and Bertol{\'i}n, Sara
and Bralten, Janita
and Bruin, Willem B.
and B{\"u}low, Robin
and Chen, Jian
and Chye, Yann
and Dannlowski, Udo
and de Kovel, Carolien G. F.
and Donohoe, Gary
and Eyler, Lisa T.
and Faraone, Stephen V.
and Favre, Pauline
and Filippi, Courtney A.
and Frodl, Thomas
and Garijo, Daniel
and Gil, Yolanda
and Grabe, Hans J.
and Grasby, Katrina L.
and Hajek, Tomas
and Han, Laura K. M.
and Hatton, Sean N.
and Hilbert, Kevin
and Ho, Tiffany C.
and Holleran, Laurena
and Homuth, Georg
and Hosten, Norbert
and Houenou, Josselin
and Ivanov, Iliyan
and Jia, Tianye
and Kelly, Sinead
and Klein, Marieke
and Kwon, Jun Soo
and Laansma, Max A.
and Leerssen, Jeanne
and Lueken, Ulrike
and Nunes, Abraham
and Neill, Joseph O'
and Opel, Nils
and Piras, Fabrizio
and Piras, Federica
and Postema, Merel C.
and Pozzi, Elena
and Shatokhina, Natalia
and Soriano-Mas, Carles
and Spalletta, Gianfranco
and Sun, Daqiang
and Teumer, Alexander
and Tilot, Amanda K.
and Tozzi, Leonardo
and van der Merwe, Celia
and Van Someren, Eus J. W.
and van Wingen, Guido A.
and V{\"o}lzke, Henry
and Walton, Esther
and Wang, Lei
and Winkler, Anderson M.
and Wittfeld, Katharina
and Wright, Margaret J.
and Yun, Je-Yeon
and Zhang, Guohao
and Zhang-James, Yanli
and Adhikari, Bhim M.
and Agartz, Ingrid
and Aghajani, Moji
and Aleman, Andr{\'e}
and Althoff, Robert R.
and Altmann, Andre
and Andreassen, Ole A.
and Baron, David A.
and Bartnik-Olson, Brenda L.
and Marie Bas-Hoogendam, Janna
and Baskin-Sommers, Arielle R.
and Bearden, Carrie E.
and Berner, Laura A.
and Boedhoe, Premika S. W.
and Brouwer, Rachel M.
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and de Zwarte, Sonja M. C.
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and Dima, Danai
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and Fairchild, Graeme
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and Francks, Clyde
and Frangou, Sophia
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and Gurholt, Tiril P.
and Gutman, Boris A.
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and Hillary, Frank G.
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and Jalbrzikowski, Maria
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and Klapwijk, Eduard T.
and Knickmeyer, Rebecca C.
and Kochunov, Peter
and Koerte, Inga K.
and Kong, Xiang-Zhen
and Liew, Sook-Lei
and Lin, Alexander P.
and Logue, Mark W.
and Luders, Eileen
and Macciardi, Fabio
and Mackey, Scott
and Mayer, Andrew R.
and McDonald, Carrie R.
and McMahon, Agnes B.
and Medland, Sarah E.
and Modinos, Gemma
and Morey, Rajendra A.
and Mueller, Sven C.
and Mukherjee, Pratik
and Namazova-Baranova, Leyla
and Nir, Talia M.
and Olsen, Alexander
and Paschou, Peristera
and Pine, Daniel S.
and Pizzagalli, Fabrizio
and Renter{\'i}a, Miguel E.
and Rohrer, Jonathan D.
and S{\"a}mann, Philipp G.
and Schmaal, Lianne
and Schumann, Gunter
and Shiroishi, Mark S.
and Sisodiya, Sanjay M.
and Smit, Dirk J. A.
and S{\o}nderby, Ida E.
and Stein, Dan J.
and Stein, Jason L.
and Tahmasian, Masoud
and Tate, David F.
and Turner, Jessica A.
and van den Heuvel, Odile A.
and van der Wee, Nic J. A.
and van der Werf, Ysbrand D.
and van Erp, Theo G. M.
and van Haren, Neeltje E. M.
and van Rooij, Daan
and van Velzen, Laura S.
and Veer, Ilya M.
and Veltman, Dick J.
and Villalon-Reina, Julio E.
and Walter, Henrik
and Whelan, Christopher D.
and Wilde, Elisabeth A.
and Zarei, Mojtaba
and Zelman, Vladimir
and Consortium, for the ENIGMA},
doi={10.1038/s41398-020-0705-1},
ee={http://doi.org/10.1038/s41398-020-0705-1}
}

@article{khider-etal-paleo19,
author = {Khider, D. and Emile-Geay, J. and McKay, N. P. and Gil, Y. and Garijo, D. and Ratnakar, V. and Alonso-Garcia, M. and Bertrand, S. and Bothe, O. and Brewer, P. and Bunn, A. and Chevalier, M. and Comas-Bru, L. and Csank, A. and Dassi\'e, E. and DeLong, K. and Felis, T. and Francus, P. and Frappier, A. and Gray, W. and Goring, S. and Jonkers, L. and Kahle, M. and Kaufman, D. and Kehrwald, N. M. and Martrat, B. and McGregor, H. and Richey, J. and Schmittner, A. and Scroxton, N. and Sutherland, E. and Thirumalai, K. and Allen, K. and Arnaud, F. and Axford, Y. and Barrows, T. and Bazin, L. and Pilaar Birch, S. E. and Bradley, E. and Bregy, J. and Capron, E. and Cartapanis, O. and Chiang, H.-W. and Cobb, K. M. and Debret, M. and Dommain, R. and Du, J. and Dyez, K. and Emerick, S. and Erb, M. P. and Falster, G. and Finsinger, W. and Fortier, D. and Gauthier, Nicolas and George, S. and Grimm, E. and Hertzberg, J. and Hibbert, F. and Hillman, A. and Hobbs, W. and Huber, M. and Hughes, A. L. C. and Jaccard, S. and Ruan, J. and Kienast, M. and Konecky, B. and Le Roux, G. and Lyubchich, V. and Novello, V. F. and Olaka, L. and Partin, J. W. and Pearce, C. and Phipps, S. J. and Pignol, C. and Piotrowska, N. and Poli, M.-S. and Prokopenko, A. and Schwanck, F. and Stepanek, C. and Swann, G. E. A. and Telford, R. and Thomas, E. and Thomas, Z. and Truebe, S. and von Gunten, L. and Waite, A. and Weitzel, N. and Wilhelm, B. and Williams, J. and Williams, J. J. and Winstrup, M. and Zhao, N. and Zhou, Y.},
title = {PaCTS 1.0: A Crowdsourced Reporting Standard for Paleoclimate Data},
journal = {Paleoceanography and Paleoclimatology},
volume = {34},
number = {10},
doi = {10.1029/2019PA003632},
ee = {http://doi.org/10.1029/2019PA003632},
year = {2019}
}

@article{gil-selman-19,
author = {Yolanda Gil and Bart Selman},
title = {A 20-Year Community Roadmap for Artificial Intelligence Research in the US},
journal = {Computing Community Consortium (CCC) and Association for the Advancement of Artificial Intelligence (AAAI) report published in arXiv},
ee = {https://arxiv.org/abs/1908.02624v1},
year = {2019}
}

@article{ gil-etal-cacm19,
  title = {Intelligent Systems for Geosciences: An Essential Research Agenda},
  author = {Yolanda Gil and Suzanne Pierce and Hassan Babaie and Arindam Banerjee 
  and Kirk Borne and Gary Bust and Michelle Cheatham and Imme Ebert-Uphoff 
  and Carla Gomes and Mary Hill and John Horel and Leslie Hsu and Jim Kinter 
  and Craig Knoblock and David Krum and Vipin Kumar and Pierre Lermusiaux 
  and Yan Liu and Chris North and Victor Pankratius and Shanan Peters 
  and Beth Plale and Allen Pope and Sai Ravela and Juan Restrepo and Aaron Ridley 
  and Hanan Samet and Shashi Shekhar and Katie Skinner and Padhraic Smyth 
  and Basil Tikoff and Lynn Yarmey and and Jia Zhang},
  journal = {Communications of the ACM},
  volume = {62},
  issue = {1},
  ee = {http://doi.org/10.1145/3192335},
  doi = {10.1145/3192335},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-cacm19.pdf},
  year = {2019}
}

@inproceedings{cen-etal-iaqvec19,
author = {Lingkai Cen and Joon-Ho Choi and Xiaomeng Yao and Yolanda Gil and Shrikanth Narayanan and Maryann Pentz},
title = {A Personal Visual Comfort Model: Predict an Individual\textquotesingle s Visual Comfort Using Occupant Eye Pupil Sizes and Machine Learning},
booktitle = {Tenth International Conference on Indoor Air Quality, Ventilation and Energy Conservation in Buildings, IOP Conference Series in Materials Science and Engineering (609)4},
address = {Bari, Italy},
year = {2019}
}

@inproceedings{garijo-etal-escience19,
author = {Daniel Garijo and Maximiliano Osorio and Deborah Khider and Varun Ratnakar and Yolanda Gil},
title = {OKG-Soft: An Open Knowledge Graph with Machine Readable Scientific Software Metadata},
booktitle = {Proceedings of the Fifteenth International IEEE eScience Conference},
address = {San Diego, CA},
year = {2019}
}

@inproceedings{carrillo-et-al-sciknow19,
  title = {Semantic Workflows and Machine Learning for the Assessment of Carbon Storage by Urban Trees},
  author = {Carrillo Garcia, Juan Manuel and Daniel Garijo and Mark Crowley and Rober Carrillo and Yolanda Gil and Katherine Borda},
  booktitle = {Proceedings of the Third Workshop on Capturing Scientific Knowledge (SciKnow), held in conjunction with the 2019 ACM International Conference on Knowledge Capture (K-CAP'19)},
  address = {Los Angeles, CA},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/carrillo-et-al-sciknow19.pdf},
  year = 2019
}

@inproceedings{garijo-etal-dmah19,
  title = {Towards Automated Hypothesis Testing in Neuroscience},
  author = {Daniel Garijo and Shobeir Fakhraei and Varun Ratnakar and Qifan Yang and Hanna Endrias and Yibo Ma and Regina Wang and Michael Bornstein and Joanna Bright and Yolanda Gil and Neda Jahanshad},
  booktitle = {Proceedings of the Fifth Workshop on Data Management and Analytics for Medicine and Healthcare (DMAH), held in conjunction with the 45th International Conference on Very Large Data Bases (VLDB)},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/garijo-et-al-dmah19.pdf},
  Year = 2019
}

@inproceedings{gil-etal-iui19,
  author = {Yolanda Gil and James Honaker and Shikhar Gupta and Yibo Ma and Vito D\textquotesingle Orazio and Daniel Garijo and Shruti Gadewar and Qifan Yang and Neda Jahanshad},
  title = {Towards Human-Guided Machine Learning},
  booktitle = {Proceedings of the 24th ACM International Conference on Intelligent User Interfaces (IUI)},
  address = {Marina del Rey, CA},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-iui19.pdf},
  ee = {http://doi.org/10.1145/3301275.3302324},
  doi = {110.1145/3301275.3302324},
  year = {2019}
}

@inproceedings{srivastava-etal-psb19,
  author = {Arunima Srivastava and Ravali Adusumilli and Hunter Boyce and Daniel Garijo and Varun Ratnakar and Rajiv Mayani and Thomas Yu and Raghu Machiraju and Yolanda Gil and Parag Mallick},
  title = {Semantic Workflows for Benchmark Challenges: Enhancing Comparability, Reusability and Reproducibility},
  booktitle = {Proceedings of the Pacific Symposium on Biocomputing (PSB)},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/srivastava-etal-psb19.pdf},
  ee = {https://psb.stanford.edu/psb-online/proceedings/psb19/srivastava.pdf},
  year = {2019}
}

@article{gundersen-etal-aimagazine18,
  title = {On Reproducible AI: Towards Reproducible Research, Open Science, and Digital Scholarship in AI Publications},
  author = {Odd Erik Gundersen and Yolanda Gil and David W. Aha},
  journal = {AI Magazine},
  volume = {39},
  issue = {3},
  ee = {http://doi.org/10.1609/aimag.v39i3.2816},
  doi = {10.1609/aimag.v39i3.2816},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gundersen-etal-aimagazine18.pdf},
  year = {2018}
}

@inproceedings{cheong-etal-wi18,
  author = {Ken Cheong and Daniel Garijo and William K. Cheung and Yolanda Gil},
  title = {PSM-Flow: Probabilistic Subgraph Mining for Discovering Reusable Fragments in Workflows},
  booktitle = {Proceedings of IEEE/WIC/ACM International Conference on Web Intelligence (WI-18)},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/cheong-etal-wi18.pdf},
  address = {Santiago, Chile},
  year = {2018}
}

@inproceedings{mcmahon-etal-incf18,
  author = {Agnes McMahon and Daniel Garijo and Ryan Espiritu and Faisal Rashid and MiHyun Jang and Tejal Patted and Varun Ratnakar and Yolanda Gil and Paul Thompson and Neda Jahanshad},
  title = {ENIGMA-ODS: A Platform for Global Neuroscience Collaborations in the ENIGMA Consortium},
  booktitle = {INCF Neuroinformatics Congress},
  address = {Montreal, Canada},
  year = {2018}
}

@article{geay-etal-pages18,
  title = {LinkedEarth: Supporting Paleoclimate Data Standards and Crowd Curation},
  author = {Julien Emile-Geay and Deborah Khider and Nicholas P. McKay and Yolanda Gil and Daniel Garijo and Varun Ratnakar},
  journal = {Past Global Changes Magazine},
  volume = {26},
  issue = {2},
  ee = {http://doi.org/10.22498/pages.26.2.62},
  doi = {10.22498/pages.26.2.62},
  year = {2018}
}

@inproceedings{carvalho-etal-escience18,
  author = {Lucas Carvalho and Daniel Garijo and Claudia Bauzer Medeiros and Yolanda Gil},
  title = {Semantic Software Metadata for Workflow Exploration and Evolution},
  booktitle = {Proceedings of the Fourteenth IEEE International Conference on eScience},
  address = {Amsterdam, The Netherlands},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/carvalho-etal-escience18.pdf},
  doi = {https://doi.org/10.1109/eScience.2018.00132},
  year = {2018}
}

@inproceedings{gil-etal-automl18,
  title = {P4ML: A Phased Performance-Based Pipeline Planner for Automated Machine Learning},
  author = {Yolanda Gil and Ke-Thia Yao and Varun Ratnakar and Daniel Garijo and Greg Ver Steeg and Pedro Szekely and Rob Brekelmans and Mayank Kejriwal and Fanghao Luo and I-Hui Huang},
  booktitle = {Proceedings of Machine Learning Research, ICML 2018 AutoML Workshop},
  year = {2018},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-automl18.pdf}
}

@inproceedings{gil-etal-iemss18,
  author = {Yolanda Gil and Kelly Cobourn and Ewa Deelman and Chris Duffy and Rafael Ferreira da Silva and 
Armen Kemanian and Craig Knoblock and Vipin Kumar and Scott Peckham and Lucas Carvalho and 
Yao-Yi Chiang and Daniel Garijo and Deborah Khider and Ankush Khandelwal and Minh Pahm and  
Jay Pujara and Varun Ratnakar and Maria Stoica and Binh Vu},
  title = {MINT: Model Integration Through Knowledge-Powered Data and Process Composition},
  booktitle = {Proceedings of the Ninth International Congress on Environmental Modeling and Software},
  address = {Ft Collins, CO},
  year = {2018},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-iemss18.pdf}
}

@inproceedings{ferreira-etal-iemss18,
  author = {Rafael Ferreira da Silva and Daniel Garijo and Scott D. Peckham and Yolanda Gil and Ewa Deelman and Varun Ratnakar},
  title = {Towards Model Integration via Abductive Workflow Composition and Multi-Method Scalable Model Execution},
  booktitle = {Proceedings of the Ninth International Congress on Environmental Modeling and Software},
  address = {Ft Collins, CO},
  year = {2018},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/ferreira-etal-iemss18.pdf}
}

@inproceedings{garijo-etal-iemss18,
  author = {Daniel Garijo and Deborah Khider and Yolanda Gil and Lucas Carvalho and Bakinam Essawy and Suzanne Pierce 
  	and Daniel H. Lewis and Varun Ratnakar and Scott D. Peckham and Chris Duffy and Jonathan Goodall},
  title = {A Semantic Model Registry to Support Comparison and Reuse},
  booktitle = {Proceedings of the Ninth International Congress on Environmental Modeling and Software},
  address = {Ft Collins, CO},
  year = {2018}
}

@article{ gil-ds17,
  title = {Thoughtful Artificial Intelligence: Forging A New Partnership for Data Science and Scientific Discovery},
  author = {Yolanda Gil },
  journal = {Data Science},
  volume = {1},
  issue = {1-2},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-ds17.pdf},
  ee = {http://doi.org/10.3233/DS-170011},
  doi = {10.3233/DS-170011},
year = {2017}
}

@inproceedings{ garijo-etal-sciknow2017,
  title = {The DISK Hypothesis Ontology: Capturing Hypothesis Evolution for Automated Discovery},
  author = {Daniel Garijo and Yolanda Gil and Varun Ratnakar},
  booktitle = {Proceedings of the Workshop on Capturing Scientific Knowledge (SciKnow), 
  held in conjunction with the ACM International Conference on Knowledge Capture (K-CAP)},
  address = {Austin, Texas},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/garijo-etal-sciknow2017.pdf },
  year = {2017}
}

@inproceedings{ carvalho-etal-sciknow2017b,
  title = {NiW: Converting Notebooks into Workflows to Capture Dataflow and Provenance},
  author = {Lucas A. M. C. Carvalho and Regina Wang and Yolanda Gil and Daniel Garijo},
  booktitle = {Proceedings of the Workshop on Capturing Scientific Knowledge (SciKnow), 
  held in conjunction with the ACM International Conference on Knowledge Capture (K-CAP)},
  address = {Austin, Texas},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/carvalho-etal-sciknow2017b.pdf },
  year = {2017}
}

@inproceedings{ carvalho-etal-sciknow2017a,
  title = {Requirements for Supporting the Iterative Exploration of Scientific Workflow Variants},
  author = {Lucas A. M. C. Carvalho and Bakinam T. Essawy and Daniel Garijo and Claudia Bauzer Medeiros and Yolanda Gil  },
  booktitle = {Proceedings of the Workshop on Capturing Scientific Knowledge (SciKnow), 
  held in conjunction with the ACM International Conference on Knowledge Capture (K-CAP)},
  address = {Austin, Texas},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/carvalho-etal-sciknow2017a.pdf },
  year = {2017}
}

@inproceedings{ gil-etal-sciknow2017,
  title = {Improving Publication and Reproducibility of Computational Experiments through Workflow Abstractions},
  author = {Yolanda Gil and Daniel Garijo and Margaret Knoblock and Alyssa Deng and 
  Ravali Adusumilli and Varun Ratnakar and Parag Mallick},
  booktitle = {Proceedings of the Workshop on Capturing Scientific Knowledge (SciKnow), 
  held in conjunction with the ACM International Conference on Knowledge Capture (K-CAP)},
  address = {Austin, Texas},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-sciknow2017.pdf},
  year = {2017}
}

@inproceedings{ gil-etal-iswc17,
  title = {A Controlled Crowdsourcing Approach to Scientific Ontology Development and Data Annotation},
  author = {Yolanda Gil and Daniel Garijo and Varun Ratnakar and Deborah Khider and Julien Emile-Geay and Nicholas McKay},
  booktitle = {Proceedings of the Sixteenth International Semantic Web Conference (ISWC)},
  address = {Vienna, Austria},
  ee = {http://doi.org/10.1007/978-3-319-68204-4_24},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-iswc17.pdf},
  year = {2017}
}

@inproceedings{ jang-etal-semsci17,
  title = {Towards Automatic Generation of Portions of Scientific Papers for Large Multi-Institutional Collaborations Based on Semantic Metadata},
  author = {MiHyun Jang and Tejal Patted and Yolanda Gil and Daniel Garijo and Varun Ratnakar and Jie Ji and Prince Wang and Aggie McMahon and Paul M. Thompson and Neda Jahanshad},
  booktitle = {Proceedings of the Workshop on Enabling Open Semantic Science, co-located with the Sixteenth International Semantic Web Conference (ISWC)},
  address = {Vienna, Austria},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/jang-etal-semsci17.pdf },
  ee = {http://ceur-ws.org/Vol-1931/paper-09.pdf},
  year = {2017}
}

@article{ sethi-gil-fgcs17,
  title = {Scientific Workflows in Data Analysis: Bridging Expertise Across
Multiple Domains},
  author = {Ricky Sethi and Yolanda Gil },
  journal = {Future Generation Computer Systems},
  volume = {75},
  ee = {http://doi.org/10.1016/j.future.2017.01.001},
  doi = {10.1016/j.future.2017.01.001},
year = {2017}
}

@article{ garijo-etal-fgcs17,
  title = {Abstract, Link, Publish, Exploit: An End to End Framework for Workflow Sharing},
  author = {Daniel Garijo and Yolanda Gil and Oscar Corcho},
  journal = {Future Generation Computer Systems},
  volume = {75},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/garijo-etal-fgcs17.pdf},
  ee = {http://doi.org/10.1016/j.future.2017.01.008},
  doi = {10.1016/j.future.2017.01.008},
year = {2017}
}

@article{ essawy-etal-ems17,
  title = { Evaluation of the OntoSoft Ontology for Describing Legacy Hydrologic Modeling Software},
  author = {Bakinam T. Essawy and Jonathan L. Goodall and Hao Xu and Yolanda Gil},
  journal = { Environmental Modelling & Software},
  ee = {http://doi.org/10.1016/j.envsoft.2017.01.024},
  doi = {10.1016/j.envsoft.2017.01.024},
volume = 92,
year = {2017}
}

@inproceedings{ gil-garijo-iui17,
  title = {Towards Automating Data Narratives},
  author = {Yolanda Gil and Daniel Garijo},
  booktitle = {Proceedings of the Twenty-Second ACM International Conference on Intelligent User Interfaces (IUI-17)},
  address = {Limassol, Cyprus},
  year = {2017},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-garijo-iui17.pdf },
  doi = {10.1145/3025171.3025193},
  ee = {http://dx.doi.org/10.1145/3025171.3025193}
}

@inproceedings{ gil-etal-aaai17,
  title = {Towards Continuous Scientific Data Analysis and Hypothesis Evolution},
  author = {Yolanda Gil and Daniel Garijo and Varun Ratnakar and Rajiv Mayani and Ravali Adusumilli and Hunter Boyce and Arunima Srivastava and Parag Mallick},
  booktitle = {Proceedings of the Thirty-First AAAI Conference on Artificial Intelligence (AAAI-17)},
  address = {San Francisco, CA},
  year = {2017},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-aaai17.pdf },
  ee = {https://doi.org/10.1609/aaai.v31i1.11157},
  doi = {10.1609/aaai.v31i1.11157}
}

@article{ stodden-etal-science16,
  title = {Enhancing Reproducibility for Computational Methods},
  author = {Victoria Stodden and Marcia McNutt and David H. Bailey and Ewa Deelman and Yolanda Gil and Brooks Hanson and Michael A. Heroux and John P.A. Ioannidis and Michela Taufer},
  journal = {Science},
  ee = {http://dx.doi.org/10.1126/science.aah6168},
  doi = {10.1126/science.aah6168},
  volume = {354},
  issue = {6317},
  year = {2016}
}

@article{ gil-etal-ess16,
  title = {Towards the Geoscience Paper of the Future: Best Practices for Documenting and Sharing Research from Data to Software to Provenance},
  author = {Yolanda Gil and C�dric H. David and Ibrahim Demir and Bakinam T. Essawy and Robinson W. Fulweiler and Jonathan L. Goodall and Leif Karlstrom and Huikyo Lee and Heath J. Mills and Ji-Hyun Oh and Suzanne A Pierce and Allen Pope and Mimi W. Tzeng and Sandra R. Villamizar and Xuan Yu},
  journal = {Earth and Space Science},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-ess16.pdf },
  ee = {http://dx.doi.org/10.1002/2015EA000136},
  doi = {10.1002/2015EA000136},
  volume = {3},
  issue = {10},
  year = {2016}
}

@article{ yu-etal-isj16,
  title = {Cyber-Innovated Watershed Research at the Shale Hills Critical Zone Observatory},
  author = {Xuan Yu and Chris Duffy and Yolanda Gil and Lorne Leonard and Gopal Bhatt and Evan Thomas},
  journal = {IEEE Systems Journal},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/yu-etal-isj16.pdf },
  doi = {10.1109/JSYST.2015.2484219},
  ee = {http://dx.doi.org/10.1109/JSYST.2015.2484219},  
  volume = {10},
  issue = {3},
  year = {2016}
}

@inproceedings{gil-etal-escience16,
  title = {OntoSoft: A Distributed Semantic Registry for Scientific Software},
  author = {Yolanda Gil and Daniel Garijo and Saurabh Mishra and Varun Ratnakar},
  booktitle = {Proceedings of the Twelfth IEEE Conference on eScience},
  address = {Baltimore, MD},
  year = {2016},
  doi = {10.1109/eScience.2016.7870916},
  ee = {http://dx.doi.org/10.1109/eScience.2016.7870916},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-escience16.pdf }
}

@inproceedings{sethi-gil-escience16,
  title = {Reproducibility in Computer Vision: Towards Open Publication of Image Analysis Experiments as Semantic Workflows},
  author = {Ricky J. Sethi and Yolanda Gil},
  booktitle = {Proceedings of the Twelfth IEEE Conference on eScience},
  address = {Baltimore, MD},
  year = {2016},
  doi = {10.1109/eScience.2016.7870918},
  ee = {http://dx.doi.org/10.1109/eScience.2016.7870918},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/sethi-gil-escience16.pdf }
}

@inproceedings{ gil-etal-acs16,
  title = {Automated Hypothesis Testing with Large Scientific Data Repositories},
  author = {Yolanda Gil and Daniel Garijo and Varun Ratnakar and Rajiv Mayani and Ravali Adusumilli and Hunter Boyce and Parag Mallick},
  booktitle = {Proceedings of the Fourth Annual Conference on Advances in Cognitive Systems (ACS)},
  address = {Evanston, IL},
  year = {2016},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-acs16.pdf }
}

@inproceedings{ gil-eaai16,
  title = {Teaching Big Data Analytics Skills with Intelligent Workflow Systems},
  author = {Yolanda Gil},
  booktitle = {Proceedings of the Sixth Symposium on Educational Advances in Artificial Intelligence (EAAI), colocated with the National Conference of the Association for the Advancement of Artificial Intelligence (AAAI)},
  address = {Phoenix, AZ},
  year = {2016},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-eaai16.pdf }
}

@inproceedings{ gil-ratnakar-icsc16,
  title = {Dynamically Generated Metadata and Replanning by Interleaving Workflow Generation and Execution},
  author = {Yolanda Gil and Varun Ratnakar},
  booktitle = {Proceedings of the Tenth IEEE International Conference on Semantic Computing (ICSC)},
  address = {Irvine, CA},
  year = {2016},
  doi = {10.1109/ICSC.2016.89},
  ee = {http://dx.doi.org/10.1109/ICSC.2016.89},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-ratnakar-icsc16.pdf }
}

@misc{is-geo-report-15,
 title = {Final Report of the 2015 NSF Workshop on Intelligent Systems for Geosciences},
 author = {Yolanda Gil and Suzanne Pierce},
 note = {National Science Foundation, Arlington, VA.},
 year = {2015},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/IS-GEO-NSF2015.pdf }
}

@article{ mookerjee-etal-eos2015,
  title = {Field Data Management: Integrating Cyberscience and Geoscience},
  author = { Matty Mookerjee and Daniel Vieira and Marjorie A. Chan and Yolanda Gil and Terry L. Pavlis and Frank S. Spear and Basil Tikoff},
  journal = {Earth and Space Science News},
  volume = {96},
  number = {20},
  doi = {10.1029/2015EO036703},
  ee = {http://dx.doi.org/10.1029/2015EO036703},
  year = {2015}
}

@inproceedings{ jahanshad-etal-scits15,
  title = {Open Science and Collaboration for Enhancing NeuroImaging Genetics through Meta-Analysis (ENIGMA) through the Organic Data Science Framework},
  author = {Neda Jahanshad and Sarah Madsen and Yervand Azatian and Derrek P. Hibar and Paul M. Thompson and Yolanda Gil},
  booktitle = {Science of Team Science Conference (SciTS)},
  address = {Bethesda, MD},
  year = {2015},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/jahanshad-etal-scits15.pdf }
}

@article{ mookerjee-etal-gsatoday2015,
  title = {We Need to Talk: Facilitating communication between field-based geoscience and cyberinfrastructure communities},
  author = { Matty Mookerjee and Daniel Vieira and Marjorie A. Chan and Yolanda Gil and Terry L. Pavlis and Frank S. Spear and Basil Tikoff},
  journal = {GSA Today},
  volume = {25},
  number = {11},
  doi = {10.1130/GSATG248GW.1},
  ee = {http://dx.doi.org/10.1130/GSATG248GW.1},
  year = {2015}
}

@inproceedings{ ebert-uphoff-gil-sciknow15,
  title = {Exploring Synergies between Machine Learning and Knowledge Representation to Capture Scientific Knowledge},
  author = {Imme Ebert-Uphoff and Yolanda Gil},
  booktitle = {First International Workshop on Capturing Scientific Knowledge (SciKnow)},
  address = {Palisades, NY},
  year = {2015},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/ebert-uphoff-gil-sciknow15.pdf }
}

@inproceedings{ gil-etal-wssspe15,
  title = {The Geoscience Paper of the Future Initiative: Training Scientists in Best Practices of Software Sharing},
  author = {Yolanda Gil and Chris Duffy and Chris Mattmann and Erin Robinson and Cedric David and Ibrahim Demir and Bakinam Essawy and Robinson W. Fulweiler and Jon Goodall and Leif Karlstrom and Kyo Lee andHeath Mills and Ji-Hyun Oh and Suzanne Pierce and Allen 
Pope and Mimi Tzeng and Karan Venayagamoorthy and Sandra Villamizar and Xuan Yu},
  booktitle = {Third Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE3)},
  address = {Boulder, CO},
  year = {2015},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-wssspe15.pdf }
}

@inproceedings{ gil-etal-kcap15b,
  title = {OntoSoft: Capturing Scientific Software Metadata},
  author = {Yolanda Gil and Varun Ratnakar and Daniel Garijo},
  booktitle = {Proceedings of the Eighth ACM International Conference on Knowledge Capture},
  address = {Palisades, NY},
  year = {2015},
  doi = {10.1145/2815833.2816955},
  ee = {http://dx.doi.org/10.1145/2815833.2816955},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-kcap2015.pdf }
}

@inproceedings{ gil-etal-kcap15,
  title = {The Provenance Bee Wiki: Tracking the Growth of Semantic Wiki Communities},
  author = { Yolanda Gil and Dipsy Kapoor and Reed Markham and Varun Ratnakar},
  booktitle = {Proceedings of the Eighth ACM International Conference on Knowledge Capture},
  address = {Palisades, NY},
  doi = {10.1145/2815833.2815847},
  ee = {http://dx.doi.org/10.1145/2815833.2815847},
  year = {2015},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-kcap15.pdf }
}

@inproceedings{ mattmann-etal-softmine2015,
  title = {DRAT: An Unobtrusive, Scalable Approach to Large Scale Software License Analysis},
  author = {Chris A. Mattmann and Ji-Hyun Oh and Tyler Palsulich and Lewis John McGibbney and Yolanda Gil and Varun Ratnakar},
  booktitle = {Proceedings of the Fourth International Workshop on Software Mining, held in conjunction with the 30th IEEE/ACM International Conference on Automated Software Engineering (ASE)},
  address = {Lincoln, NE},
  year = {2015},
  doi = {10.1109/ASEW.2015.14},
  ee = {http://dx.doi.org/10.1109/ASEW.2015.14},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/mattmann-etal-softmine2015.pdf }
}

@article{ zheng-etal-gm15,
  title = {Use of Semantic Workflows to Enhance Transparency and Reproducibility in Clinical Omics},
  author = {Christina L Zheng and Varun Ratnakar and Yolanda Gil and Shannon K McWeeney},
  journal = {Genome Medicine},
  volume = {7},
  number = {73},
  year = {2015},
  doi = {10.1186/s13073-015-0202-y},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/zheng-etal-gm15.pdf },
  ee = {http://dx.doi.org/10.1186/s13073-015-0202-y}
}

@inproceedings{ gil-etal-escience15,
  title = {A Task-Centered Framework for Computationally-Grounded Science Collaborations},
  author = { Yolanda Gil and Felix Michel and Varun Ratnakar and Matheus Hauder and Christopher Duffy and Hilary Dugan and Paul Hanson},
  booktitle = {Proceedings of the Eleventh IEEE International Conference on eScience},
  address = {Munich, Germany},
  year = {2015},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-escience15.pdf }
}

@inproceedings{ michel-etal-amcis15,
  title = {A Virtual Crowdsourcing Community for Open Collaboration in Science Processes},
  author = {Felix Michel and Yolanda Gil and Varun Ratnakar and Matheus Hauder},
  booktitle = {Proceedings of the Americas Conference on Information Systems (AMCIS)},
  address = {Puerto Rico},
  year = {2015},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/michel-etal-amcis15.pdf }
}

@inproceedings{ gil-etal-short-eswc15,
  title = {A Semantic, Task-Centered Collaborative Framework for Science},
  author = { Yolanda Gil and Felix Michel and Varun Ratnakar and Matheus Hauder},
  booktitle = {Proceedings of the Twelfth European Semantic Web Conference (ESWC)},
  address = {Portoroz, Slovenia},
  year = {2015},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-short-eswc15.pdf }
}

@inproceedings{gil-etal-eswc15,
  title = {Supporting Open Collaboration in Science through Explicit and Linked Semantic Description of Processes},
  author = { Yolanda Gil and Felix Michel and Varun Ratnakar and Jordan Read and Matheus Hauder and Christopher Duffy and Paul Hanson and Hilary Dugan},
  booktitle = {Proceedings of the Twelfth European Semantic Web Conference (ESWC)},
  address = {Portoroz, Slovenia},
  year = {2015},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-eswc15.pdf }
}

@article{gil-tiis15,
  title = {Human Tutorial Instruction in the Raw},
  author = {Yolanda Gil},
  journal = {ACM Transactions on Interactive Intelligent Systems},
  volume = {5},
  number = {1},
  year = {2015},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-tiis15.pdf }
}

@misc{ gil-ec15,
  title = {EarthCube 2015 Highlights},
  editors = {Yolanda Gil},
  note = {EarthCube Project Report EC-2015-1},
  year = {2015},
  url = {http://earthcube.org/document/2015/2015-highlights}
}

@inproceedings{gil-iui15,
  title = {Organic Data Science: A Task-Centered Interface to On-Line Collaboration in Science},
  author = { Yolanda Gil and Felix Michel and Varun Ratnakar and Matheus Hauder},
  booktitle = {Proceedings of the ACM International Conference on Intelligent User Interfaces},
  address = {Atlanta, GA},
  year = {2015},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-iui15.pdf }
}

@article{burns-etal-aimag14,
  title = {The AAAI Fall Symposium on Discovery Informatics: AI Takes a Science-Centered View on Big Data},
  author = {Gully APC Burns and Yolanda Gil and Natalia Villanueva-Rosales and Yan Liu},
  journal = {AI Magazine},
  volume = {35},
  number = {2},
  year = {2014}
}

@article{das-etal-aimatters14,
  title = {Announcing the SIGAI Career Network and Conference},
  author = {Sanmay Das and Susan L. Epstein and Yolanda Gil},
  journal = {AI Matters},
  volume = {1},
  number = {1},
  year = {2014},
  url = {http://sigai.acm.org/static/aimatters/aimatters-issue-2014-01.pdf},
  ee = {http://dx.doi.org/10.1145/2639475.2649581}
}

@article{gil-aimatters14a,
  title = {Artificial Intelligence: No Longer Just for You and Me},
  author = {Yolanda Gil},
  journal = {AI Matters},
  volume = {1},
  number = {1},
  year = {2014},
  url = {http://sigai.acm.org/static/aimatters/aimatters-issue-2014-01.pdf},
   ee = {http://dx.doi.org/10.1145/2639475.2639477} 
}

@article{gil-aimatters14b,
  title = {Ten Simple Rules for Starting a Research Group},
  author = {Yolanda Gil},
  journal = {AI Matters},
  volume = {1},
  number = {2},
  year = {2014},
  ee = {http://dx.doi.org/10.1145/2685328.2685330},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/StartingAResearchGroup-AIMatters2014.pdf}
}

@misc{ ogc-prov-report-14,
  title = {Open Geospatial Consortium Testbed 10 Provenance Engineering Report},
  author = {Joan Maso and Guillem Closa and Yolanda Gil and Benjamin Pross},
  note = {Open Geospatial Consortium (OGC) Technical Report 14-001},
  year = {2014},
  url = {https://portal.opengeospatial.org/files/?artifact_id=58967}
}

@misc{ gil-geosoft-14,
  title = {EarthCube EC3 2014 Field Trip Report},
  author = {Yolanda Gil},
  note = {Report of the EarthCube Research Coodination Network on \textquotesingle Earth-Centered Communication for Cyberinfrastructure:  Challenges of field data collection, management, and integration \textquotesingle },
  year = {2014},
  url = {EarthCube-EC3-TripReport-2014/}
}

@misc{ gil-etal-ec14,
  title = {EarthCube: Past, Present, and Future},
  author = {Yolanda Gil and Marjorie Chan and Basil Gomez and Bruce Caron (Eds)},
  note = {EarthCube Project Report EC-2014-3},
  year = {2014},
  url = {http://www.earthcube.org/document/earthcube-past-present-and-future}
}

@article{gil-etal-science14,
 title = {Amplify Scientific Discovery with Artificial Intelligence},
 author = {Yolanda Gil and Mark Greaves and James Hendler and Haym Hirsh},
  journal = {Science},
  volume = 346,
  number = 6206,
  pages = {171-172},
  year      = {2014},
  doi = {10.1126/science.1259439},
  ee = {http://dx.doi.org/10.1126/science.1259439}
}

@inproceedings {gil-eduhpc14, 
  title = {Teaching Parallelism Without Programming: A Data Science Curriculum for Non-CS Students},
  author = {Yolanda Gil},
  year      = {2014},
 address = {New Orleans, LA},
  booktitle = {Proceedings of the Workshop on Education for High-Performance Computing (EduHPC), held in conjunction with the IEEE ACM International Conference on High Performance Computing (SC)},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-eduhpc14.pdf }
}

@inproceedings {gil-etal-wssspe14, 
  title = {Collaborative Software Development Needs in Geosciences},
  author = {Yolanda Gil and Eunyoung Moon and James Howison},
  year      = {2014},
 address = {New Orleans, LA},
  booktitle = {Proceedings of the Second Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE2), held in conjunction with the IEEE ACM International Conference on High Performance Computing (SC)},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-wssspe14.pdf }
}

@inproceedings{garijo-etal-works14, 
  title = {Towards Workflow Ecosystems Through Semantic and Standard Representations},
  author = {Daniel Garijo and Yolanda Gil and Oscar Corcho},
  year      = {2014},
 address = {New Orleans, LA},
  booktitle = {Proceedings of the Ninth Workshop on Workflows in Support of Large-Scale Science (WORKS), held in conjunction with the IEEE ACM International Conference on High-Performance Computing (SC)},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/garijo-etal-works14.pdf}
}

@inproceedings{garijo-etal-escience14a, 
  title = {Workflow Reuse in Practice: A Study of Neuroimaging Pipeline Users },
  author = {Daniel Garijo and Oscar Corcho and Yolanda Gil and Meredith N. Braskie and Derrek Hibar and Xue Hua and Neda Jahanshad and Paul Thompson and Arthur W. Toga},
  year      = {2014},
 address = {Guarujua, Brazil},
  booktitle = {Proceedings of the IEEE Conference on e-Science},
  ee = {http://dx.doi.org/10.1109/eScience.2014.33},
  doi = {10.1109/eScience.2014.33},
url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/garijo-etal-escience14a.pdf}
}

@inproceedings{garijo-etal-escience14b, 
  title = {FragFlow: Automated Fragment Detection in Scientific Workflows },
  author = {Daniel Garijo and Oscar Corcho and Yolanda Gil and Boris A. Gutman and Ivo D. Dinov and Paul Thompson and Arthur W. Toga},
  year      = {2014},
 address = {Guarujua, Brazil},
  booktitle = {Proceedings of the IEEE Conference on e-Science},
    ee = {http://dx.doi.org/10.1109/eScience.2014.32},
  doi = {10.1109/eScience.2014.32},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/garijo-etal-escience14b.pdf}
}

@inproceedings{gil-iemss14,
  author = {Yolanda Gil},
  title = {Intelligent Workflow Systems and Provenance-Aware Software},
  booktitle = {Proceedings of the Seventh International Congress on Environmental Modeling and Software},
  address = {San Diego, CA},
  year = {2014},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-iemss14.pdf },
  ee = {http://www.iemss.org/sites/iemss2014/papers/iemss2014_submission_384.pdf}
}

@misc{harth-gil-lgd14,
  author = {Andreas Harth and Yolanda Gil},
  title = {Geospatial Data Integration with Linked Data and Provenance Tracking},
  note = {W3C/OGC Workshop on Linking Geospatial Data},
  address = {London, UK},
  year = {2014},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/harth-gil-lgd14.pdf }
}

@misc{garijo-etal-provanalytics14,
  author = {Daniel Garijo and Yolanda Gil and Andreas Harth},
  title = {User Requirements for Geospatial Provenance},
  note = {Provenance Analytics, co-located with the Fifth International Provenance and Annotation Workshop (IPAW)},
  address = {Cologne, Germany},
  year = {2014},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/garijo-etal-provanalytics14.pdf }
}

@inproceedings{garijo-etal-ipaw14,
  author = {Daniel Garijo and Yolanda Gil and Andreas Harth},
  title = {Challenges in Modeling Geospatial Provenance},
  booktitle = {Proceedings of the Fifth International Provenance and Annotation Workshop (IPAW)},
  address = {Cologne, Germany},
  year = {2014},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/garijo-etal-ipaw14.pdf }
}

@article{ goodmal-etal-ploscompbio14,
 title = {Ten Simple Rules for the Care and Feeding of Scientific Data},
 author = {Alyssa Goodman and Alberto Pepe and Alexander W. Blocker and Christine L. Borgman and Kyle Cranmer and
Merce Crosas and Rosanne Di Stefano and Yolanda Gil and Paul Groth and Margaret Hedstrom and David W. Hogg and Vinay Kashyap and Ashish Mahabal and Aneta Siemiginowska and Aleksandra Slavkovic},
 journal = {PLOS Computational Biology},
  year      = {2014},
   volume = 10,
      issue = 4,
  url = {http://arxiv.org/abs/1401.2134},
  ee = {http://dx.doi.org/10.1371/journal.pcbi.1003542}
 }

@article{bergmann-gil-isj12,
 title = {Similarity Assessment and Efficient Retrieval of Semantic Workflows},
 author = {Ralph Bergmann and Yolanda Gil},
 journal = {Information Systems Journal},
   volume = 40,
  year      = {2014},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/bergmann-gil-isj12.pdf},
   ee = {http://dx.doi.org/10.1016/j.is.2012.07.005}
 }

@misc{mattmann-etal-earthzine13,
  author = {Chris A. Mattmann and Duane Waliser and Jinwon Kim and Paul Ramirez and Cameron Goodale and
Andrew F. Hart and Paul Loikith and Huikyo Lee and Michael Joyce and Maziyar Boustani and
Shakeh Khudikyan and Kim Whitehall and Jesslyn Whittell and Paul Zimdars and Daniel Crichton and
Yolanda Gil and Luca Cinquini},
  title = {Model Evaluation Using the NASA Regional Climate Model Evaluation System (RCMES)},
  note = {IEEE Earthzine},
  year = {2013},
  ee = {http://www.earthzine.org/2013/12/02/model-evaluation-using-the-nasa-regional-climate-model-evaluation-system-rcmes/ }
}

@article{garijo-etal-plosone13, 
  title = {Quantifying Reproducibility in Computational Biology: The Case of the Tuberculosis Drugome},
  author = {Daniel Garijo and Sarah Kinnings and Li Xie and Lei Xie and Yinliang Zhang and Philip E. Bourne and Yolanda Gil},
 journal = {PLOS ONE},
  year      = {2013},
  ee = {http://dx.doi.org/10.1371/journal.pone.0080278}
  }

@inproceedings{gil-etal-works13, 
  title = {Time-Bound Analytic Tasks on Large Datasets through Dynamic Configuration of Workflows},
  author = {Yolanda Gil and Varun Ratnakar and Rishi Verma and Andrew Hart and Paul Ramirez and Chris Mattmann and Arni Sumarlidason and Samuel L. Park},
  year      = {2013},
 address = {Denver, CO},
  booktitle = {Proceedings of the Eighth Workshop on Workflows in Support of Large-Scale Science (WORKS), held in conjunction with SC 2013},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-works13.pdf}
}

@inproceedings{kale-etal-aaaifssdi13, 
  title = {Capturing Data Analysis Expertise with Visualization in Workflows},
  author = {David Kale and Samuel Di and Yan Liu and Yolanda Gil},
  year      = {2013},
 address = {Arlington, Virginia},
  booktitle = {AAAI Fall Symposium on Discovery Informatics: AI Takes a Science-Centered View on Big Data},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/kale-etal-aaaifss13.pdf}
}

@article{garijo-etal-fgcs13, 
  title = {Common Motifs in Scientific Workflows: An Empirical Analysis},
  author = {Daniel Garijo and Pinar Alper and Khalid Belhajjame and Oscar Corcho and Yolanda Gil and Carole Goble},
  year      = {2013},
 journal = {Future Generation Computer Systems},
  ee = {http://dx.doi.org/10.1016/j.future.2013.09.018}
}

@inproceedings{sethi-etal-mm13, 
  title = {Large-Scale Multimedia Content Analysis Using Scientific Workflows},
  author = {Ricky J. Sethi and Yolanda Gil and Hyunjoon Jo and Andrew Philpot},
  year      = {2013},
 address = {Barcelona, Spain},
  booktitle = {Twenty-First ACM International Conference on Multimedia},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/sethi-etal-mm13.pdf}
}

@article{sethi-etal-prl13, 
  title = {Structured Analysis of the ISI Atomic Pair Actions Dataset Using Workflows},
  author = {Ricky J. Sethi and Hyunjoon Jo and Yolanda Gil},
   volume=34,
 number=15,
  year      = {2013},
 journal = {Pattern Recognition Letters},
  ee = {http://dx.doi.org/10.1016/j.patrec.2012.12.015}
}

@inproceedings{gil-etal-icsc13, 
  title = {The Democratization of Semantic Properties: An Analysis of Semantic Wikis},
  author = {Yolanda Gil and Angela Knight and Kevin Zhang and Larry Zhang and Varun Ratnakar and Ricky Sethi},
  year      = {2013},
 address = {Irvine, CA},
  booktitle = {Seventh IEEE International Conference on Semantic Computing (ICSC)},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-icsc13.pdf}
}

@inproceedings{gil-icsc13, 
  title = {Mapping Semantic Workflows to Alternative Workflow Execution Engines},
  author = {Yolanda Gil},
  year      = {2013},
 address = {Irvine, CA},
  booktitle = {Seventh IEEE International Conference on Semantic Computing (ICSC)},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-icsc13.pdf}
}

@inproceedings{gil-ratnakar-kcap13, 
  title = {Knowledge Capture in the Wild: A Perspective from Semantic Wiki Communities},
  author = {Yolanda Gil and Varun Ratnakar},
  year      = {2013},
 address = {Banff, Canada},
  booktitle = {Seventh ACM International Conference on Knowledge Capture (K-CAP)},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-ratnakar-kcap13.pdf}
}

@inproceedings{garijo-etal-kcap13, 
  title = {Detecting Common Scientific Workflow Fragments Using Templates and Execution Provenance},
  author = {Daniel Garijo and Oscar Corcho and Yolanda Gil},
  year      = {2013},
 address = {Banff, Canada},
  booktitle = {Seventh ACM International Conference on Knowledge Capture (K-CAP)},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/garijo-etal-kcap13.pdf}
}

@incollection{gil-handbookhc13, 
  title = {Social Knowledge Collection},
  author = {Yolanda Gil},
  year      = {2013},
  booktitle = {Handbook of Human Computation}, 
  editors = {Pietro Michelucci}, 
  publisher = {Springer},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-handbookhc13.pdf},
  ee = {http://www.springer.com/computer/ai/book/978-1-4614-8805-7}
}

@inproceedings{gil-etal-hiai13, 
  title = {Using Semantic Workflows to Disseminate Best Practices and Accelerate Discoveries in Multi-Omic Data Analysis},
  author = {Yolanda Gil and Shannon McWeeney and Christopher E. Mason},
  year      = {2013},
 address = {Bellevue, WA},
  booktitle = {AAAI Workshop on Expanding the Boundaries of Health Informatics using AI (HIAI), held in conjunction with the Conference of the Association for the Advancement of Artificial Intelligence (AAAI)},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-hiai13.pdf}
}

@misc{gil-etal-cbbw13, 
  title = {Intelligent Assistance to Disseminate Best Practices and Accelerate Discoveries in Cancer Omics},
  author = {Yolanda Gil and Christopher E. Mason and Christina Zheng and Shannon McWeeney},
  year      = {2013},
  note = {2013 NCI EDRN Cancer Biomarkers Bioinformatics Workshop, Pasadena, CA},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-cbbw13.pdf} 
}

@inproceedings{gil-isi13,
title = {Towards Task-Centered Network Models through Semantic Workflows},
author = {Yolanda Gil},
  year      = {2013},
 address = {Seattle, WA},
  booktitle = {Proceedings of the IEEE Conference on Intelligence and Security Informatics (ISI)},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-isi13.pdf}
}

@inproceedings{ gil-etal-iui13,
 title = {An Initial Analysis of Semantic Wikis},
 author = {Yolanda Gil and Angela Knight and Kevin Zhang and Larry Zhang and Ricky Sethi},
 booktitle = {Proceedings of the ACM International Conference on Intelligent User Interfaces (IUI)}, 
 address = {Santa Monica, CA},
  year      = {2013},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-iui13.pdf }
 }

@article{gil-hirsh-aimag13, 
  title = {The AAAI Fall Symposium on "Discovery Informatics: The Role of AI Research in Innovating Scientific Processes},
  author = {Yolanda Gil and Haym Hirsh},
  year      = {2013},
 journal = {AI Magazine},
 volume=34,
 number=1,
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-hirsh-aimag13.pdf}
}

@misc{w3c-provenance-primer-13,
 title = {A Primer for the PROV Provenance Model},
 author = {Yolanda Gil and Simon Miles and Khalid Belhajjame and Henela Deus and Daniel Garijo and Graham Klyne and Paolo Missier and Stian Soiland-Reyes and Stephan Zednik},
 note = {World Wide Web Consortium (W3C)},
 year = {2013},
 url = {http://www.w3.org/TR/prov-primer/ }
}

@misc{w3c-provenance-dm-13,
 title = {PROV-DM: The PROV Data Model},
 author = {Luc Moreau and Paolo Missier and Khalid Belhajjame and Reza B\textquotesingle Far and James Cheney and Sam Coppens and Stephen Cresswell and Yolanda Gil and Paul Groth and Graham Klyne and Timothy Lebo and Jim McCusker and Simon Miles and James Myers and Satya Sahoo and Curt Tilmes},
 note = {World Wide Web Consortium (W3C)},
 year = {2013},
 url = {http://www.w3.org/TR/prov-dm/ }
}

@misc{mccann-etal-ocean12, 
  title = {Scientific Workflows: The Key to Convergence?},
  author = {Mike P. McCann and Andreas F. Hofmann and Thomas C. Harmon and Yolanda Gil},
  year      = {2012},
  note = {Ocean Sciences Meeting, Salt Lake City, Utah}
}

@misc{gil-etal-agu12, 
  title = {Designing a Roadmap for Workflow Cyberinfrastructure in the Geosciences: From Big Data to the Long Tail},
  author = {Yolanda Gil and Ewa Deelman and Ibrahim Demir and Chris Duffy and Marlon Pierce and Suresh Marru and Gerry Wiener},
  year      = {2012},
  note = {American Geophysical Union Fall Meeting, San Francisco, CA}
}

@misc{gil-etal-ismb12, 
  title = {Using Semantic Workflows for Genome-Scale Analysis},
  author = {Yolanda Gil and Varun Ratnakar and Ewa Deelman and Christopher Mason},
  year      = {2012},
  note = {International Conference on Intelligent Systems for Molecular Biology (ISMB), Long Beach, CA}
}

@article{duffy-etal-eos12,
 title = {Designing a Roadmap for Geoscience Workflows},
 author = {Christopher Duffy and Yolanda Gil and Ewa Deelman and  Suresh Marru and Marlon Pierce and Ibrahim Demir and Gerry Wiener},
 journal = {Eos Transactions of the American Geophysical Union},
  volume = 93,
  number = 24,
  year      = {2012},
 url = {http://www.agu.org/pubs/crossref/2012/2012EO240002.shtml}
}

@misc{ec-workflows-report-12,
 title = {EarthCube Report on a Workflows Roadmap for the Geosciences},
 author = {Ewa Deelman and Chris Duffy and Yolanda Gil and Suresh Marru and Marlon Pierce and Gerry Wiener},
 note = {National Science Foundation, Arlington, VA.},
 year = {2012},
 url = {http://www.isi.edu/%7Egil/EarthCube/EC-WorkflowsRoadmap-September2012.pdf },
  ee = {http://www.isi.edu/nsf-workflows06}
}

@misc{diw-report-12,
 title = {Final Report of the 2012 NSF Workshop on Discovery Informatics},
 author = {Yolanda Gil and Haym Hirsh},
 note = {National Science Foundation, Arlington, VA.},
 year = {2012},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/diw2012/NSFDiscoveryInformatics2012-FinalReport.pdf },
  ee = {http://www.discoveryinformaticsinitiative.org/diw2012}
}

@inproceedings{sethi-etal-works12, 
  title = {Reusing Workflow Fragments Across Multiple Data Domains},
  author = {Ricky J. Sethi and Hyunjoon Jo and Yolanda Gil},
  year      = {2012},
 address = {Salt Lake City, Utah},
  booktitle = {Proceedings of the Seventh Workshop on Workflows in Support of Large-Scale Science (WORKS-12), held in conjunction with SC 2012},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/sethi-etal-works12.pdf }
}

@inproceedings{garijo-gil-lisc12, 
  title = {Augmenting PROV with Plans in P-PLAN: Scientific Processes as Linked Data},
  author = {Daniel Garijo and Yolanda Gil},
  year      = {2012},
 address = {Boston, MA},
  booktitle = {Second International Workshop on Linked Science: Tackling Big Data (LISC), held in conjunction with the International Semantic Web Conference (ISWC)},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/garijo-gil-lisc12.pdf}
}

@inproceedings{gil-hanson-lisc12, 
  title = {Organic Data Sharing: A Novel Approach to Scientific Data Sharing},
  author = {Yolanda Gil and Varun Ratnakar and Paul Hanson},
  year      = {2012},
 address = {Boston, MA},
  booktitle = {Second International Workshop on Linked Science: Tackling Big Data (LISC), held in conjunction with the International Semantic Web Conference (ISWC)},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-hanson-lisc12.pdf}
}

@inproceedings{gil-hirsh-aaaifssdi12, 
  title = {Discovery Informatics: AI Opportunities in Scientific Discovery},
  author = {Yolanda Gil and Haym Hirsh},
  year      = {2012},
 address = {Arlington, Virginia},
  booktitle = {AAAI Fall Symposium on Discovery Informatics: The Role of AI Research in Innovating Scientific Processes},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-hirsh-aaaifssdi12.pdf}
}

@inproceedings{garijo-etal-escience12, 
  title = {Common Motifs in Scientific Workflows: An Empirical Analysis},
  author = {Daniel Garijo and Pinar Alper and Khalid Belhajjame and Oscar Corcho and Yolanda Gil and Carole Goble},
  year      = {2012},
 address = {Chicago, Illinois},
  booktitle = {Proceedings of the IEEE Conference on e-Science},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/garijo-etal-escience12.pdf}
}

@article{gil-etal-tiis12,
 title = {Capturing Common Knowledge about Tasks: Intelligent Assistance for To Do Lists},
 author = {Yolanda Gil and Varun Ratnakar and Timothy Chklovski and Paul Groth and Denny Vrandecic},
 journal = {ACM Transactions on Interactive Intelligent Systems},
  volume = 2,
  number = 3,
  year      = {2012},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-tiis12.pdf},
 }

@inproceedings{groth-etal-swpm12,
 title = {Automatic Metadata Annotation through Reconstructing Provenance},
 author = {Paul Groth and Yolanda Gil and Sara Magliacane},
 booktitle = {Proceedings of the Third International Workshop on the role of Semantic Web in Provenance Management (SWPM) }, 
 address = {Heraklion, Greece},
  year      = {2012},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/groth-etal-swpm12.pdf}
 }

@article{groth-etal-ijdc12,
 title = {Requirements for Provenance on the Web},
 author = {Paul Groth and Yolanda Gil and James Cheney and Simon Miles},
 journal = {International Journal of Digital Curation},
  volume = 7,
  number = 1,
  year      = {2012},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/groth-etal-ijdc12.pdf },
  ee = {http://ijdc.net/index.php/ijdc/article/view/203}
 }

@misc{waes-report-11,
 title = {Final Report of the 2011 Workshop on Aquatic Ecosystem Sustainability (WAES)},
 author = {Yolanda Gil and Thomas Harmon},
 note = {Technical Report ISI-TR-674, Information Sciences Institute, Marina del Rey, CA.},
 year = {2011},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/docs/waes11/WAES11-FinalReport.pdf },
  ee = {water.isi.edu/waes11}
}

@article{ gil-etal-jetai11,
 title = {A Semantic Framework for Automatic Generation of Computational Workflows Using Distributed Data and Component Catalogs},
 author = {Yolanda Gil and Pedro Antonio Gonzalez-Calero and Jihie Kim and Joshua Moody and Varun Ratnakar},
 journal = {Journal of Experimental and Theoretical Artificial Intelligence},
  volume = 23,
  number = 4,
  year      = {2011},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-jetai11.pdf }
 }

@article{vrandecic-etal-jws11,
 title = {Shortipedia: Aggregating and Curating Semantic Web Data},
 author = {Denny Vrandecic and Varun Ratnakar and Makrus Kroetzsch and Yolanda Gil},
  journal = {Journal of Web Semantics},
  volume = 9,
  number = 3,
  year      = {2011},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/vrandecic-etal-jws11.pdf }
}

@inproceedings{garijo-gil-works11, 
  title = {A New Approach for Publishing Workflows: Abstractions, Standards, and Linked Data},
  author = {Daniel Garijo and Yolanda Gil},
  year      = {2011},
 address = {Seattle, Washington},
  booktitle = {Proceedings of the Sixth Workshop on Workflows in Support of Large-Scale Science (WORKS), held in conjunction with SC 2011},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/garijo-gil-works11.pdf }
}

@inproceedings{hauder-etal-works11, 
  title = {Making Data Analysis Expertise Broadly Accessible through Workflows},
  author = {Matheus Hauder and Yolanda Gil and Ricky Sethi and Yan Liu and Hyunjoon Jo},
  year      = {2011},
 address = {Seattle, Washington},
  booktitle = {Proceedings of the Sixth Workshop on Workflows in Support of Large-Scale Science (WORKS), held in conjunction with SC 2011},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/hauder-etal-works11.pdf }
}

@inproceedings{groth-gil-iswc-ls11, 
  title = {Linked Data for Network Science},
  author = {Paul Groth and Yolanda Gil},
  year      = {2011},
 address = {Bonn, Germany},
  booktitle = {First International Workshop on Linked Science at the International Semantic Web Conference (ISWC)},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/groth-gil-iswc-ls11.pdf }
}

@article{poldrack-etal-fn11,
 title = {The Cognitive Atlas: Towards a knowledge foundation for cognitive neuroscience},
 author = {Russell A. Poldrack and Aniket Kittur and Donald Kalar and Eric Miller and Christian Seppa and Yolanda Gil and D. Stott Parker and Fred W. Sabb and Robert M. Bilder},
  journal = {Frontiers in Neuroinformatics},
  volume = 5,
  number = 17,
  year      = {2011},
  ee = {http://dx.doi.org/10.3389/fninf.2011.00017}
}

@inproceedings{hauder-etal-escience11, 
  title = {A Framework for Efficient Text Analytics through Automatic Configuration and Customization of Scientific Workflows},
  author = {Matheus Hauder and Yolanda Gil and Yan Liu},
  year      = {2011},
 address = {Stockholm, Sweden},
  booktitle = {Proceedings of the Seventh IEEE International Conference on e-Science},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/hauder-etal-eScience2011.pdf }
}

@inproceedings{gil-etal-iswc11, 
  title = {Mind Your Metadata: Exploiting Semantics for Configuration, Adaptation, and Provenance in Scientific Workflows},
  author = {Yolanda Gil and Pedro Szekely and Sandra Villamizar and Thomas Harmon and Varun Ratnakar and Shubham Gupta and Maria Muslea and Fabio Silva and Craig Knoblock},
  year      = {2011},
 address = {Bonn, Germany},
  booktitle = {Proceedings of the Tenth International Semantic Web Conference (ISWC)},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-iswc11.pdf }
}

@article{gil-groth-jws11,
 title = {Introduction to the Special Issue on Using Provenance in the Semantic Web},
 author = {Yolanda Gil and Paul Groth},
  journal = {Journal of Web Semantics},
  volume = 9,
  number = 2,
  year      = {2011},
  ee = {http://dx.doi.org/10.1016/j.websem.2011.05.005}
}

@incollection{kim-etal-mrbook11, 
  title = {Goal-Directed Meta-Control for Integrated Procedure Learning},
  author = {Jihie Kim and Karen Myers and Melinda Gervasio and Yolanda Gil},
  year      = {2011},
  booktitle = {Metareasoning: Thinking about Thinking}, 
  editors = {Michael T. Cox and Anita Raja (Eds)}, 
  publisher = {MIT Press},
  ee = {http://mitpress.mit.edu/catalog/item/default.asp?ttype=2&tid=12557}
}

@inproceedings{ bergmann-gil-iccbr11,
 title = {Retrieval of Semantic Workflows with Knowledge Intensive Similarity Metrics},
 author = {Ralph Bergmann and Yolanda Gil},
 booktitle = {Proceedings of the Nineteenth International Conference on Case Based Reasoning (ICCBR)}, 
 address = {Greenwich, London},
  year      = {2011},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/bergmann-gil-iccbr11.pdf }
 }

@inproceedings{ sethi-gil-aaai11ws,
 title = {A Social Collaboration Argumentation System for Generating Multi-Faceted Answers in Question and Answer Communities},
 author = {Ricky J. Sethi and Yolanda Gil},
 booktitle = {Proceedings of the AAAI Workshop on Computational Models of Natural Argument}, 
 address = {San Francisco, CA},
  year      = {2011},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/sethi-gil-aaai11ws.pdf}
 }

@inproceedings{ groth-gil-kcap11,
 title = {LinkedDataLens: Linked Data as a Network of Networks},
 author = {Paul Groth and Yolanda Gil},
 booktitle = {Proceedings of the ACM International Conference on Knowledge Capture (K-CAP)}, 
 address = {Banff, Alberta, Canada},
  year      = {2011},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/groth-gil-kcap11.pdf }
 }

@inproceedings{ gil-etal-iui11,
 title = {TellMe:  Learning Procedures from Tutorial Instruction},
 author = {Yolanda Gil and Varun Ratnakar and Christian Fritz},
 booktitle = {Proceedings of the ACM International Conference on Intelligent User Interfaces}, 
 address = {Palo Alto, CA},
  year      = {2011},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-iui11.pdf }
 }

@inproceedings{ fritz-gil-iui11,
 title = {A Formal Framework for Combining Natural Instruction and Demonstration for End-User Programming},
 author = { Christian Fritz and Yolanda Gil },
 booktitle = {Proceedings of the ACM International Conference on Intelligent User Interfaces}, 
 address = {Palo Alto, CA},
  year      = {2011},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/fritz-gil-iui11.pdf }
 }

@inproceedings{ vrandecic-etal-iui11,
 title = {Want World Domination? Play Risk! Matching To-Do items with How-Tos from the Web},
 author = {Denny Vrandecic and Yolanda Gil and Varun Ratnakar },
 booktitle = {Proceedings of the ACM International Conference on Intelligent User Interfaces}, 
 address = {Palo Alto, CA},
  year      = {2011},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/vrandecic-etal-iui11.pdf }
 }

@article{gil-ikcap-ker11,
 title = {Interactive Knowledge Capture in the New Millenium: How the Semantic Web Changed Everything},
 author = {Yolanda Gil},
 journal = {Knowledge Engineering Review},
  volume = 26,
  number = 1,
  year      = {2011},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-ikcap-ker11.pdf }
 }

@article{ moreau-etal-fgcs11,
 title = {The Open Provenance Model Core Specification (v1.1)},
 author = {Luc Moreau and Ben Clifford and Juliana Freire and Joe Futrelle and Yolanda Gil 
 and Paul Groth and Natalia Kwasnikowska and Simon Miles and Paolo Missier and Jim Myers and 
 Beth Plale and Yogesh Simmhan and Eric Stephan and Jan Van denBussche},
 journal = {Future Generation Computer Systems}, 
  volume = 27,
  number = 6,
  year      = {2011},
  ee        = {http://dx.doi.org/10.1016/j.future.2010.07.005 },
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/moreau-etal-fgcs11.pdf }
 }
 

@article{ gil-etal-ieee-is-11,
 title = {Wings: Intelligent Workflow-Based Design of Computational Experiments},
 author = {Yolanda Gil and Varun Ratnakar and Jihie Kim and Pedro Antonio Gonzalez-Calero and Paul Groth and Joshua Moody and Ewa Deelman},
 journal = {IEEE Intelligent Systems},
  volume = 26,
  number = 1,
  year      = {2011},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-ieee-is-11.pdf }
 }

@misc{w3c-provenance-10,
 title = {Final Report of the W3C Provenance Incubator Group},
 author = {Yolanda Gil and James Cheney and Paul Groth and Olaf Hartig and Simon Miles and Luc Moreau and Paolo Pinheiro daSilva},
 note = {World Wide Web Consortium (W3C)},
 year = {2010},
 url = {http://www.w3.org/2005/Incubator/prov/wiki/ }
}

@inproceedings{vrandecic-etal-swc10,
 title = {Shortipedia: Aggregating and Curating Semantic Web Data},
 author = {Denny Vrandecic and Varun Ratnakar and Makrus Kroetzsch and Yolanda Gil},
 address = {Shanghai, China},
  year      = {2010},
 booktitle = {Semantic Web Challenge at the International Semantic Web Conference (ISWC)},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/vrandecic-etal-swc10.pdf}
}

@inproceedings{ gil-etal-stn-aaaifss10,
 title = {Social Task Networks: Personal and Collaborative Task Formulation and Management in Social Networking Sites},
 author = {Yolanda Gil and Paul Groth and Varun Ratnakar},
 booktitle = {Proceedings of the AAAI Fall Symposium on Proactive Assistant Agents }, 
 address = {Arlington, VA},
 year = 2010,
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-stn-aaaifss10.pdf }
 }

@inproceedings{ gil-etal-aaaifss10,
 title = {Assisting Scientists with Complex Data Analysis Tasks through Semantic Workflows},
 author = {Yolanda Gil and Varun Ratnakar and Christian Fritz},
 booktitle = {Proceedings of the AAAI Fall Symposium on Proactive Assistant Agents }, 
 address = {Arlington, VA},
  year      = {2010},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-aaaifss10.pdf }
 }

@inproceedings{ fri-gil-aaai10ws,
 title = {Towards the Integration of Programming by Demonstration and Programming by Instruction using Golog},
 author = {Christian Fritz and Yolanda Gil},
 booktitle = {Proceedings of the AAAI Workshop on Plan, Activity, and Intent Recognition (PAIR)}, 
 address = {Atlanta, GA},
  year      = {2010},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/fri-gil-aaai10ws.pdf}
 }

@misc{ zhao-etal-rdfns10,
 title = {Provenance Requirements for the Next Version of RDF},
 author = {Jun Zhao and Christian Bizer and Yolanda Gil and Paolo Missier and Satya Sahoo},
 address = {Stanford, CA},
  year      = {2010},
 note = {W3C Workshop on RDF Next Steps},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/zhao-etal-rdfns10.pdf}
}

@article{ kumar-etal-ccj10,
 title = {Parameterized Specification, Configuration, and Execution of Data-Intensive Scientific Workflows},
 author = {Vijay Kumar and Tahsin Kurc and Varun Ratnakar and Jihie Kim and Gaurang Mehta and Karan Vahi and Yoonju Lee Nelson and P. Sadayappan and Ewa Deelman and Yolanda Gil and Mary Hall and Joel Saltz},
 journal = {Cluster Computing Journal},
 volume = {13},
 number = {3},
  year      = {2010},
 pages     = {315-333},
 ee = {http://dx.doi.org/10.1007/s10586-010-0133-8},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/kumar-etal-ccj10.pdf }
 }

@article{kim-gil-spraragen-jetai09,
  author    = {Jihie Kim and
               Yolanda Gil and
               Marc Spraragen},
  title     = {Principles for Interactive Acquisition and Validation of
               Workflows},
  journal   = {Journal of Experimental and Theoretical Artificial Intelligence},
  volume    = {22},
  number    = {2},
  year      = {2010},
  pages     = {103-134},
  ee        = {http://dx.doi.org/10.1080/09528130902823698},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/kim-gil-spraragen-jetai09.pdf }
}

@inproceedings{ gil-fritz-aaaisss10,
 title = {Reasoning about the Appropriate Use of Private Data through Computational Workflows},
 author = {Yolanda Gil and Christian Fritz},
 booktitle = {Proceedings of the AAAI Spring Symposium on Privacy Management}, 
 address = {Stanford, CA},
  year = {2010},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-fritz-aaaisss10.pdf }
 }

@article{kurc-et-al-hpc09,
  author    = {Tahsin M. Kur\c{c} and Shannon Hastings and Vijay S. Kumar and
               Stephen Langella and Ashish Sharma and Tony Pan and
               Scott Oster and David Ervin and Justin Permar and
               Sivaramakrishnan Narayanan and Yolanda Gil and Ewa Deelman and
               Mary W. Hall and Joel H. Saltz},
  title     = {High Performance Computing and Grid Computing for Integrative Biomedical Research},
  journal   = {Journal of High Performance Computing Applications},
  volume    = {23},
  number    = {3},
  year      = {2009},
  pages     = {252-264},
  ee        = {http://dx.doi.org/10.1177/1094342009106192},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/kurc-et-al-hpc09.pdf }
}

@inproceedings{ gil-etal-escience09,
 title = {Expressive Reusable Workflow Templates},
 author = {Yolanda Gil and Paul Groth and Varun Ratnakar and Christian Fritz},
 booktitle = {Proceedings of the Fifth IEEE International Conference on e-Science (e-Science)}, 
 address = {Oxford, UK},
  year = {2009},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-escience09.pdf }
 }

@inproceedings{groth-etal-esaw-10,
  author = {Paul T. Groth and Simon Miles and Sanjay Modgil and Nir Oren and Michael Luck and Yolanda Gil},
  title = {Determining the Trustworthiness of New Electronic Contracts},
  booktitle = {Proceedings  of the Tenth Annual Workshop on Engineering Societies in the Agents World (ESAW)},
  address = {Utrecht, The Netherlands},
  year = {2009},
  pages = {132-147},
  ee = {http://dx.doi.org/10.1007/978-3-642-10203-5_12},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/groth-etal-esaw-10.pdf }
}

@inproceedings{gil-etal-kcap09,
  author = {Yolanda Gil and Jihie Kim and Gonzalo Fl{\'o}rez Puga and Varun Ratnakar and Pedro A. Gonz{\'a}lez-Calero},
  title = {Workflow Matching using Semantic Metadata},
  booktitle = {Proceedings of the Fifth International Conference on Knowledge Capture (K-CAP)}, 
  address = {Redondo Beach, CA},
  year = {2009},
  pages = {121-128},
  ee = {http://doi.acm.org/10.1145/1597735.1597757},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-kcap09.pdf }
}

@proceedings{k-cap-09,
  editor    = {Yolanda Gil and
               Natasha Fridman Noy},
  title     = {Proceedings of the 5th International Conference on Knowledge
               Capture (K-CAP)},
  address = {Redondo Beach, CA},
  publisher = {Association for Computing Machinery},
  year      = {2009}
}

@inproceedings{ gil-etal-ijcaiwikiAI-09,
 title = {Leveraging Social Networking Sites to Acquire Rich Task Structure},
 author = {Yolanda Gil and Paul Groth and Varun Ratnakar},
 booktitle = { Proceedings of the IJCAI Workshop on User-Contributed Knowledge and Artificial Intelligence: An Evolving Synergy (WikiAI), held in conjunction with the Twenty-First International Joint Conference on Artificial Intelligence (IJCAI)},
 address = {Pasadena, CA},
  year = {2009},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-ijcaiwikiAI-09.pdf }
 }

@inproceedings{groth-gil-swf09,
  author = {Paul T. Groth and Yolanda Gil},
  title = {Analyzing the Gap between Workflows and their Natural Language Descriptions},
  booktitle = {Proceedings of the IEEE International Workshop on Scientific Workflows (SWF)},
  address = {Los Angeles, CA},
  year = {2009},
  pages = {299-305},
  ee = {http://doi.ieeecomputersociety.org/10.1109/SERVICES-I.2009.55},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/groth-gil-swf09.pdf }
}

@inproceedings{kumar-et-al-hpdc09,
  author    = {Vijay S. Kumar and P. Sadayappan and Gaurang Mehta and Karan Vahi and Ewa Deelman and Varun Ratnakar and
               Jihie Kim and Yolanda Gil and Mary W. Hall and Tahsin M. Kur\c{c} and Joel H. Saltz},
  title     = {An Integrated Framework for Performance-Based Optimization
               of Scientific Workflows},
  booktitle = {Proceedings of the Eighteenth ACM International Symposium on High
               Performance Distributed Computing (HPDC)},
  address = {Garching, Germany},
  year      = {2009},
  pages     = {177-186},
  ee        = {http://doi.acm.org/10.1145/1551609.1551638},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/kumar-et-al-hpdc09.pdf }, 
  bibsource = {DBLP, http://dblp.uni-trier.de}
}

@article{gil-sp08,
  author    = {Yolanda Gil},
  title     = {From Data to Knowledge to Discoveries: Artificial Intelligence
               and Scientific Workflows},
  journal   = {Scientific Programming},
  volume    = {17},
  number    = {3},
  year      = {2009},
  pages     = {231-246},
  ee        = {http://dx.doi.org/10.3233/SPR-2009-0261},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-sp08.pdf }
}

@inproceedings{ groth-gil-aaaisss09,
 title = {Scaffolding Instructions to Learn Procedures from Users},
 author = {Paul Groth and Yolanda Gil},
 booktitle = { Proceedings of the AAAI Spring Symposium on Agents that Learn from Human Teachers},  
 address = {Stanford, CA},
 year = {2009},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/groth-gil-aaaisss09.pdf }
 }

@inproceedings{groth-gil-iui09,
  author = {Paul T. Groth and Yolanda Gil},
  title = {A Scientific Workflow Construction Command Line},
  booktitle = {Proceedings of the ACM International Conference on Intelligent User Interfaces (IUI)}, 
  address = {Sanibel Island, FL},
  year = {2009},
  pages = {445-450},
  ee = {http://doi.acm.org/10.1145/1502650.1502716},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/groth-gil-iui09.pdf }
}

@inproceedings{gil-ratnakar-aaai08,
  author = {Yolanda Gil and Varun Ratnakar},
  title = {Automating To-Do Lists for Users: Interpretation of To-Dos for Selecting and Tasking Agents},
  booktitle = {Proceedings of the Twenty-Third Conference of the American Association for Artificial Intelligence (AAAI)},
  address = {Chicago, IL},
  year = {2008},
  pages = {765-771},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-ratnakar-aaai08.pdf }
}

@article{woollard-etal-ieee08,
  author = {David Woollard and Nenad Medvidovic and Yolanda Gil and Chris Mattmann},
  title = {Scientific Software as Workflows: From Discovery to Distribution},
  journal = {IEEE Software},
  volume = {25},
  number = {4},
  year = {2008},
  pages = {37-43},
  ee = {http://dx.doi.org/10.1109/MS.2008.92},
  url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=4548406 }
}

@article {CCPE07-Provenance, 
  title = {Provenance Trails in the Wings/Pegasus Workflow System},
  author = {Jihie Kim and Ewa Deelman and Yolanda Gil and Gaurang Mehta and Varun Ratnakar},
  year = {2008},
  journal = {Concurrency and Computation: Practice and Experience, Special Issue on the First Provenance Challenge},
  volume = {20},
  number = {5},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/CCPE07-Provenance.pdf }
}

@inproceedings{kumar-etal-ipdps08,
  author = {Vijay S. Kumar and Mary W. Hall and Jihie Kim and Yolanda Gil and Tahsin M. Kur\c{c} and Ewa Deelman and Varun Ratnakar and Joel H. Saltz},
  title = {Designing and Parameterizing a Workflow for Optimization: A Case Study in Biomedical Imaging},
  booktitle = {Proceedings of the Twentysecond IEEE International Symposium on Parallel and Distributed Processing (IPDPS)},
  address = {Miami, FL},
  year = {2008},
  ee = {http://dx.doi.org/10.1109/IPDPS.2008.4536411}
}

@inproceedings{ hall-gil-lucas-ieeeprocs08,
 title = {Self-Configuring Applications for Heterogeneous Systems: Program Composition and Optimization Using Cognitive Techniques},
 author = {Mary Hall and Yolanda Gil and Robert Lucas},
 booktitle = {Proceedings of the IEEE, Special Issue on Cutting-Edge Computing: Using New Commodity Architectures}, 
 volume = {96}, 
 number = {5},
 year = {2008},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/hall-gil-lucas-ieeeprocs08.pdf }
 }

@inproceedings{gil-ratnakar-iui08,
  author = {Yolanda Gil and Varun Ratnakar},
  title = {Towards Intelligent Assistance for To-Do Lists},
  booktitle = {Proceedings of the ACM International Conference on Intelligent User Interfaces (IUI)}, 
  address = {Gran Canaria, Canary Islands, Spain},
  year = {2008},
  pages = {329-332},
  ee = {http://doi.acm.org/10.1145/1378773.1378822},
  bibsource = {DBLP, http://dblp.uni-trier.de},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-ratnakar-iui08.pdf }
}

@article{computer-NSFworkflows07,
  author = {Yolanda Gil and Ewa Deelman and Mark H. Ellisman and Thomas Fahringer and Geoffrey Fox and Dennis Gannon and Carole A. Goble and Miron Livny and Luc Moreau and Jim Myers},
  title = {Examining the Challenges of Scientific Workflows},
  journal = {IEEE Computer},
  volume = {40},
  number = {12},
  year = {2007},
  pages = {24-32},
  ee = {http://doi.ieeecomputersociety.org/10.1109/MC.2007.421},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/computer-NSFworkflows07.pdf }
}

@inproceedings{ gil-etal-peas07,
 title = {Privacy Enforcement in Data Analysis Workflows},
 author = {Yolanda Gil and William K. Cheung and Varun Ratnakar and Kai-kin Chan},
 booktitle = {Proceedings of the AAAI Workshop on Privacy Enforcement and Accountability with Semantics (PEAS), held in conjunction with the Sixth International Semantic Web Conference (ISWC) and the Second Asian Semantic Web Conference (ASWC)},
 address = {Busan, Korea},
 year = {2007},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-peas07.pdf }
 }

@article{ijhcs-metareasoning-07,
  author = {Jihie Kim and Yolanda Gil},
  title = {Incorporating tutoring principles into interactive knowledge acquisition},
  journal = {International Journal of Human-Computer Studies},
  volume = {65},
  number = {10},
  year = {2007},
  pages = {852-872},
  ee = {http://dx.doi.org/10.1016/j.ijhcs.2007.06.003},
  bibsource = {DBLP, http://dblp.uni-trier.de},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/ijhcs-metareasoning-07.pdf }
}

@article{jws-trust-07,
  author = {Donovan Artz and Yolanda Gil},
  title = {A survey of trust in computer science and the Semantic Web},
  journal = {Journal of Web Semantics},
  volume = {5},
  number = {2},
  year = {2007},
  pages = {58-71},
  ee = {http://www.websemanticsjournal.org/index.php/ps/article/view/112},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/jws-trust-07.pdf }
}

@inproceedings{gil-etal-iaai07,
  author = {Yolanda Gil and Varun Ratnakar and Ewa Deelman and Gaurang Mehta and Jihie Kim},
  title = {Wings for Pegasus: Creating Large-Scale Scientific Applications Using Semantic Representations of Computational Workflows},
  booktitle = {Proceedings of the Twenty-Second National Conference on Artificial Intelligence (AAAI)}, 
  address = {Vancouver, British Columbia, Canada},
  year = {2007},
  pages = {1767-1774},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-iaai07.pdf }
}

@inproceedings{ cheung-gil-aaai-ses-07,
 title = {Towards Privacy Aware Data Analysis Workflows for e-Science},
 author = {William Cheung and Yolanda Gil},
 booktitle = {Proceedings of the AAAI Workshop on Semantic e-Science (SeS2007), held in conjunction with the Twenty-Second Conference of the  Association for the Advancement of Artificial Intelligence (AAAI)}, 
 address = {Vancouver, British Columbia, Canada},
 year = {2007},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/cheung-gil-aaai-ses-07.pdf }
 }

@inproceedings{ gil-etal-works07,
 title = {On the Black Art of Designing Computational Workflows},
 author = {Yolanda Gil and Pedro A. Gonzalez-Calero and Ewa Deelman},
 booktitle = {Proceedings of the Second Workshop on Workflows in Support of Large-Scale Science (WORKS), held in conjunction with the  IEEE International Symposium on High Performance Distributed Computing (HPDC)},
 address = {Monterrey, CA},
 year = {2007},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-works07.pdf }
 }

@inproceedings{ipdps07,
  author = {Bhupesh Bansal and {\"U}mit V. \c{C}ataly{\"u}rek and Jacqueline Chame and Chun Chen and Ewa Deelman and Yolanda Gil and Mary W. Hall and Vijay S. Kumar and Tahsin M. Kur\c{c} and Kristina Lerman and Aiichiro Nakano and Yoon-Ju Lee Nelson and Joel H. Saltz and Ashish Sharma and Priya Vashishta},
  title = {Intelligent Optimization of Parallel and Distributed Applications},
  booktitle = {Proceedings of the Twentyfirst International Parallel and Distributed Processing Symposium (IPDPS)},
  address = {Long Beach, CA},
  year = {2007},
  ee = {http://dx.doi.org/10.1109/IPDPS.2007.370490}
}

@inproceedings{ BEAM-ToDo-AAAI-SSS07-Final,
 title = {Enhancing Interaction with To-Do Lists Using Artificial Assistants},
 author = {Yolanda Gil and Timothy Chklovski},
 booktitle = {Proceedings of the AAAI Spring Symposium on Interaction Challenges for Artificial Assistants},  
 address = {Stanford, CA},
 year = {2007},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/BEAM-ToDo-AAAI-SSS07-Final.pdf }
 }

@article{gil-artz-jws07,
  author = {Yolanda Gil and Donovan Artz},
  title = {Towards Content Trust of Web Resources},
  journal = {Journal of Web Semantics},
  volume = {5},
  number = {4},
  year = {2007},
  ee = {http://www.websemanticsjournal.org/index.php/ps/article/view/150},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-artz-jws07.pdf }
}

@misc{ nsf-workflows06,
 title = {Final Report of the NSF Workshop on Challenges of Scientific Workflows},
 author = {Ewa Deelman and Yolanda Gil (Co-Chairs)},
 address = {Arlington, VA},
 note = {National Science Foundation, also available from http://www.nsf.gov/od/oci/reports.jsp},
 year = {2006},
 url = {http://www.isi.edu/nsf-workflows06 },
 ee = {http://www.nsf.gov/events/event\_summ.jsp?cntn\_id=108411 }
}

@inproceedings{deelman-gil-escience06,
  author = {Ewa Deelman and Yolanda Gil},
  title = {Managing Large-Scale Scientific Workflows in Distributed Environments: Experiences and Challenges},
  booktitle = {Proceedings of the Workshop on Scientific Workflows and Business Workflow Standards in e-Science of the Second International Conference on e-Science and Grid Technologies (e-Science)}, 
  address = {Amsterdam, The Netherlands},
  year = {2006},
  ee = {http://doi.ieeecomputersociety.org/10.1109/E-SCIENCE.2006.161},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/deelman-gil-escience06.pdf }
}

@inproceedings{wings-owl06,
  author = {Yolanda Gil and Jihie Kim and Varun Ratnakar and Ewa Deelman},
  title = {Wings for Pegasus: A Semantic Approach to Creating Very Large Scientific Workflows},
  booktitle = {Proceedings of the 2006 Workshop on OWL: Experiences and Directions (OWL-ED)}, 
  address = {Athens, GA},
  year = {2006},
  ee = {http://ceur-ws.org/Vol-216/submission_29.pdf},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/wings-owl06.pdf }
}

@inproceedings{kim-gil-ratnakar-iswc06,
  author = {Jihie Kim and Yolanda Gil and Varun Ratnakar},
  title = {Semantic Metadata Generation for Large Scientific Workflows},
  booktitle = {Proceedings of the Fifth International Semantic Web Conference (ISWC)},
  address = {Athens, GA},
  year = {2006},
  pages = {357-370},
  ee = {http://dx.doi.org/10.1007/11926078_26},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/kim-gil-ratnakar-iswc06.pdf }
}

@incollection {workflow-bookchapter-06, 
  title = {Workflow Composition},
  author = {Yolanda Gil},
  year = {2006},
  booktitle = {Workflows for e-Science}, 
  editors = {Dennis Gannon and Ewa Deelman and Matthew Shields and Ian Taylor (Eds)}, 
  publisher = "Springer Verlag",
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/workflow-bookchapter-06.pdf }
}

@article{ gil-jws06,
 title = {On Agents and Grids: Creating the Fabric of a New Generation of Distributed Intelligent Systems},
 author = {Yolanda Gil},
 journal = {Journal of Web Semantics}, 
 volume = {4}, 
 number = {2},
 year = {2006},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-jws06.pdf }
 }

@inproceedings{gil-artz-www06,
  author = {Yolanda Gil and Donovan Artz},
  title = {Towards Content Trust of Web Resources},
  booktitle = {Proceedings of the Fifteenth International World Wide Web Conference (WWW)},
  address =  {Edinburgh, Scotland, UK},
  year = {2006},
  pages = {565-574},
  ee = {http://doi.acm.org/10.1145/1135777.1135861},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-artz-www06.pdf }
}

@inproceedings{gil-etal-ipaw06,
  author = {Yolanda Gil and Varun Ratnakar and Ewa Deelman},
  title = {Metadata Catalogs with Semantic Representations},
  booktitle = {Proceedings of the International Provenance and Annotation Workshop (IPAW)},
  address = {Chicago, IL},
  year = {2006},
  pages = {90-100},
  ee = {http://dx.doi.org/10.1007/11890850_11},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-ipaw06.pdf }
}

@inproceedings{ chklovski-etal-iui06,
 title = {Organizing Argumentation Statements to Support Intelligence Analysis},
 author = {Tim Chklovski and Jihie Kim and Yolanda Gil},
 booktitle = {Proceedings of the Workshop on Intelligent User Interfaces for Intelligence Analysis at the ACM International Conference on Intelligent User Interfaces},
 address = {Sydney, Australia},
 year = {2006},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/chklovski-etal-iui06.pdf }
 }

@inproceedings{ gil-etal-iswc05,
 title = {Virtual Metadata Catalogs: Augmenting Metadata Catalogs with Semantic Representations},
 author = {Yolanda Gil and Varun Ratnakar and Ewa Deelman},
 booktitle = {Proceedings of the Fourth International Semantic Web Conference (ISWC)}, 
 address = {Galway, Ireland},
 year = {2005},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-iswc05.pdf }
 }

@inproceedings{chklovski-gil-kcap05,
  author = {Timothy Chklovski and Yolanda Gil},
  title = {Improving the design of intelligent acquisition interfaces for collecting world knowledge from web contributors},
  booktitle = {Proceedings of the Third International Conference on Knowledge Capture (K-CAP)}, 
  address = {Banff, Alberta, Canada},
  year = {2005},
  pages = {35-42},
  ee = {http://doi.acm.org/10.1145/1088622.1088630},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/chklovski-gil-kcap05.pdf }
}

@article{ maechlin-etal-sigmod05,
 title = {Simplifying Construction of Complex Workflows for Non-Expert Users of the Southern California Earthquake Center Community Modelling Environment},
 author = {P. Maechling and H. Chalupsky and M. Dougherty and E. Deelman and Y. Gil and S. Gullapalli and V. Gupta and C. Kesselman and J. Kim and G. Mehta and B. Mendenhall and T. Russ and G. Singh and M. Spraragen and G. Staples and K. Vahi},
 journal = {ACM SIGMOD Record, Special Issue on Scientific Workflows},
 volume = {34},
 number = {3}, 
 year = {2005},
 url = {http://portal.acm.org/citation.cfm?id=1084811 }
 }

@article{ deelman-etal-sp05,
 title = {Pegasus: A Framework for Mapping Complex Scientific Workflows onto Distributed Systems},
 author = {E. Deelman and G. Singh and M. Su and J. Blythe and Y. Gil and C. Kesselman and J. Kim and G. Mehta and K. Vahi and G. B. Berriman and J. Good and A. Laity and J. C. Jacob and D. S. Katz},
 journal = {Scientific Programming},
 volume = {13}, 
 number = {3},
 year = {2005}
 }

@inproceedings{chklovski-gil-aaai05,
  author = {Timothy Chklovski and Yolanda Gil},
  title = {An Analysis of Knowledge Collected from Volunteer Contributors},
  booktitle = {Proceedings of the Twentieth National Conference on Artificial Intelligence (AAAI)},
  address = {Pittsburgh, PA},
  year = {2005},
  pages = {564-571},
  bibsource = {DBLP, http://dblp.uni-trier.de},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/chklovski-gil-aaai05.pdf }
}

@article{AImag05,
  author = {Yolanda Gil},
  title = {Description Logics and Planning},
  journal = {AI Magazine},
  volume = {26},
  number = {2},
  year = {2005},
  pages = {73-84},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/AImag05.pdf }
}

@inproceedings{blythe-etal-ccgrid05,
  author = {James Blythe and S. Jain and Ewa Deelman and Yolanda Gil and Karan Vahi and Anirban Mandal and Ken Kennedy},
  title = {Task scheduling strategies for workflow-based applications in grids},
  booktitle = {Proceedings of the Fifth International Symposium on Cluster Computing and the Grid (CCGrid)},
  address = {Cardiff, UK},
  year = {2005},
  pages = {759-767},
  ee = {http://doi.ieeecomputersociety.org/10.1109/CCGRID.2005.1558639},
}

@inproceedings{ chklovski-gil-aaaisss05,
 title = {Towards Managing Knowledge Collection from Volunteer Contributors},
 author = {Tim Chklovski and Yolanda Gil},
 booktitle = {Proceedings of the AAAI Spring Symposium on Knowledge Collection from Volunteer Contributors (KCVC)},
 address = {Stanford, CA},
 year = {2005},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/chklovski-gil-aaaisss05.pdf }
 }

@inproceedings{iui05,
  author = {Timothy Chklovski and Varun Ratnakar and Yolanda Gil},
  title = {User interfaces with semi-formal representations: a study of designing argumentation structures},
  booktitle = {Proceedings of the ACM International Conference on Intelligent User Interfaces (IUI)}, 
  address = {San Diego, CA},
  year = {2005},
  pages = {130-136},
  ee = {http://doi.acm.org/10.1145/1040830.1040864},
  bibsource = {DBLP, http://dblp.uni-trier.de},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/iui05.pdf }
}

@article{bada-etal-jws04,
  author = {Michael Bada and Robert Stevens and Carole A. Goble and Yolanda Gil and Michael Ashburner and Judith A. Blake and J. Michael Cherry and Midori A. Harris and Suzanna Lewis},
  title = {A short study on the success of the Gene Ontology},
  journal = {Journal of Web Semantics},
  volume = {1},
  number = {2},
  year = {2004},
  pages = {235-240},
  url = {http://www.websemanticsjournal.org/index.php/ps/article/view/38 },
  ee = {http://dx.doi.org/10.1016/j.websem.2003.12.003}
}

@inproceedings{deelman-etal-axgrids04,
  author = {Ewa Deelman and James Blythe and Yolanda Gil and Carl Kesselman and Gaurang Mehta and Sonal Patil and Mei-Hui Su and Karan Vahi and Miron Livny},
  title = {Pegasus: Mapping Scientific Workflows onto the Grid},
  booktitle = {Proceedings of the Second European Across Grids Conference (AxGrids)},
  address = {Nicosia, Cyprus},
  year = {2004},
  pages = {11-20},
  ee = {http://springerlink.metapress.com/openurl.asp?genre=article{\&}issn=0302-9743{\&}volume=3165{\&}spage=11}
}

@article{blythe-etal-ieeeis04,
  author = {Jim Blythe and Ewa Deelman and Yolanda Gil},
  title = {Automatically Composed Workflows for Grid Environments},
  journal = {IEEE Intelligent Systems},
  volume = {19},
  number = {4},
  year = {2004},
  pages = {16-23},
  ee = {http://doi.ieeecomputersociety.org/10.1109/MIS.2004.24}
}

@inproceedings{tuchinda-etal-iaai04,
  author = {Rattapoom Tuchinda and Snehal Thakkar and Yolanda Gil and Ewa Deelman},
  title = {Artemis: Integrating Scientific Data on the Grid},
  booktitle = {Proceedings of the Sixteenth Conference on Innovative Applications of Artificial Intelligence (IAAI)}, 
  address = {San Jose, CA},
  year = {2004},
  pages = {892-899},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/tuchinda-etal-iaai04.pdf }
}

@inproceedings{blythe-gil-www04,
  author = {Jim Blythe and Yolanda Gil},
  title = {Incremental formalization of document annotations through ontology-based paraphrasing},
  booktitle = {Proceedings of the 13th International World Wide Web Conference (WWW)},
  address = {New York, NY},
  year = {2004},
  pages = {455-461},
  ee = {http://doi.acm.org/10.1145/988672.988734},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/blythe-gil-www04.pdf }
}

@article{ editor-ieee-is-04,
 title = {Guest Editor\textquotesingle s Introduction to the Special Issue on e-Science},
 author = {David DeRoure and Yolanda Gil and Jim Hendler (Eds)},
 journal = {IEEE Intelligent Systems},
 year = {2004},
 url = {http://csdl.computer.org/comp/mags/ex/2004/01/x1024.pdf }
 }

@article{ieee-is-04,
  author = {Yolanda Gil and Ewa Deelman and Jim Blythe and Carl Kesselman and Hongsuda Tangmunarunkit},
  title = {Artificial Intelligence and Grids: Workflow Planning and Beyond},
  journal = {IEEE Intelligent Systems},
  volume = {19},
  number = {1},
  year = {2004},
  pages = {26-33},
  ee = {http://csdl.computer.org/comp/mags/ex/2004/01/x1026abs.htm},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/ieee-is-04.pdf }
}

@inproceedings{iui04,
  author = {Jihie Kim and Marc Spraragen and Yolanda Gil},
  title = {An intelligent assistant for interactive workflow composition},
  booktitle = {Proceedings of the ACM International Conference on Intelligent User Interfaces}, 
  address = {Funchal, Madeira, Portugal},
  year = {2004},
  pages = {125-131},
  ee = {http://doi.acm.org/10.1145/964442.964466},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/iui04.pdf }
}

@inproceedings{deelman-etal-ppam03,
  author = {Ewa Deelman and James Blythe and Yolanda Gil and Carl Kesselman and Scott Koranda and Albert Lazzarini and Gaurang Mehta and Maria Alessandra Papa and Karan Vahi},
  title = {Pegasus and the Pulsar Search: From Metadata to Execution on the Grid},
  booktitle = {Applications Grid Workshop at the Fifth International Conference on Parallel Processing and Applied Mathematics (PPAM)},
  address = "Czestochowa, Poland",
  year = {2003},
  pages = {821-830},
  ee = {http://springerlink.metapress.com/openurl.asp?genre=article{\&}issn=0302-9743{\&}volume=3019{\&}spage=821}
}

@inproceedings {chklovski-etal-iswc03, 
  title = {TRELLIS: Supporting Decision Making via Argumentation in the Semantic Web},
  author = {Timothy Chklovski and Yolanda Gil and Varun Ratnakar and John Lee},
  year = "2003",
  booktitle = {Proceedings of Second International Semantic Web Conference (ISWC)},
  address = "Sanibel Island, FL"
}

@incollection {deelman-etal-03, 
  title = {Workflow Management in GriPhyN},
  author = {Ewa Deelman and James Blythe and Yolanda Gil and Carl Kesselman},
  year = {2003},
  booktitle = "Grid Resource Management", 
  editors = "J. Nabrzyski, J. Schopf, and J. Weglarz editors",
  publisher = "Kluwer"
}

@article{ deelman-etal-jogc03,
 title = {Mapping Abstract Workflows onto Grid Environments},
 author = {Ewa Deelman and Jim Blythe and Yolanda Gil and Carl Kesselman and Gaurang Mehta and Karan Vahi and Kent Blackburn and Albert Lazzarini and Adam Arbree and Richard Cavanaugh and Scott Koranda},
 journal = {Journal of Grid Computing}, 
 volume = {1},
 number = {1},
 year = {2003},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/deelman-etal-jogc03.pdf }
 }

@inproceedings{iaai03,
  author = {Jim Blythe and Ewa Deelman and Yolanda Gil and Carl Kesselman},
  title = {Transparent Grid Computing: A Knowledge-Based Approach},
  booktitle = {Proceedings of the Fifteenth Conference on Innovative Applications of Artificial Intelligence (IAAI)}, 
  address = {Acapulco, Mexico},
  year = {2003},
  pages = {57-64},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/iaai03.pdf }
}

@inproceedings {kim-gil-aied03, 
  title = {Proactive Acquisition from Tutoring and Learning Principles},
  author = {Jihie Kim and Yolanda Gil},
  year = "2003",
  booktitle = "Proceedings of the Eleventh International Conference on Artificial Intelligence in Education (AI-ED)",
  address = "Sydney, Australia",
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/kim-gil-aied03.pdf }
}

@inproceedings{icaps03-submission,
  author = {Jim Blythe and Ewa Deelman and Yolanda Gil and Carl Kesselman and Amit Agarwal and Gaurang Mehta and Karan Vahi},
  title = {The Role of Planning in Grid Computing},
  booktitle = {Proceedings of the Thirteenth International Conference on Automated Planning and Scheduling (ICAPS)},
  address = {Trento, Italy},
  year = {2003},
  pages = {153-163},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/icaps03-submission.pdf }
}

@incollection{gil-dagstuhl03,
  author = {Yolanda Gil},
  title = {Knowledge Mobility: Semantics for the Web as a White Knight for Knowledge-Based Systems},
  booktitle = {Spinning the Semantic Web: Bringing the World Wide Web to Its Full Potential},
  editors = {Dieter Fensel and James Hendler and Henry Lieberman and Wolfgang Whalster (Eds)},
  publisher = "MIT Press",
  year = {2003},
  pages = {253-278},
}

@inproceedings{ikraft-ekaw02,
  author = {Yolanda Gil and Varun Ratnakar},
  title = {IKRAFT: Interactive Knowledge Representation and Acquisition from Text},
  booktitle = {Proceedings of the Thirteenth International Conference on Knowledge Engineering and Knowledge Management (EKAW)},
  address = {Siguenza, Spain},
  year = {2002},
  pages = {27-36},
  ee = {http://link.springer.de/link/service/series/0558/bibs/2473/24730027.htm},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/ikraft-ekaw02.pdf }
}

@inproceedings{trellis-ekaw02,
  author = {Yolanda Gil and Varun Ratnakar},
  title = {TRELLIS: An Interactive Tool for Capturing Information Analysis and Decision Making},
  booktitle = {Proceedings of the Thirteenth International Conference on Knowledge Engineering and Knowledge Management (EKAW)},
  address = {Siguenza, Spain},
  year = {2002},
  pages = {37-42},
  ee = {http://link.springer.de/link/service/series/0558/bibs/2473/24730037.htm},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/trellis-ekaw02.pdf }
}

@inproceedings{ gil-kim-cogsci02,
 title = {Interactive Knowledge Acquisition Tools: A Tutoring Perspective},
 author = {Yolanda Gil and Jihie Kim},
 booktitle = {Proceedings of the 24th Annual Meeting of the Cognitive Science Society (CogSci), Fairfax, VA, August 8-10},
 year = {2002},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-kim-cogsci02.pdf }
 }

@article {elves-aimag02, 
  title = {Agent Technology to Support Human Organizations},
  author = {Hans Chalupsky and Yolanda Gil and Craig Knoblock and Kristina Lerman and Jean Oh and David Pynadath and Thomas Russ and Milind Tambe},
  year = {2002},
  journal = {AI Magazine},
  volume = {23}, 
  number = {2}, 
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/elves-aimag02.pdf }
}

@inproceedings{GilRatnakarISWC2002,
  author = {Yolanda Gil and Varun Ratnakar},
  title = {Trusting Information Sources One Citizen at a Time},
  booktitle = {Proceedings of the First Semantic Web Conference (ISWC)}, 
  address = {Sardinia, Italy},
  year = {2002},
  pages = {162-176},
  ee = {http://link.springer.de/link/service/series/0558/bibs/2342/23420162.htm},
  bibsource = {DBLP, http://dblp.uni-trier.de},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/GilRatnakarISWC2002.pdf }
}

@inproceedings{KimGil-ITS02,
  author = {Jihie Kim and Yolanda Gil},
  title = {Deriving Acquisition Principles from Tutoring Principles},
  booktitle = {Proceedings of the International Conference on Intelligent Tutoring Systems (ITS)},
  address = {Biarritz, France and San Sebastian, Spain},
  year = {2002},
  pages = {661-670},
  ee = {http://link.springer.de/link/service/series/0558/bibs/2363/23630661.htm},
  bibsource = {DBLP, http://dblp.uni-trier.de},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/KimGil-ITS02.pdf }
}

@inproceedings{gil-ratnakar-flairs02,
  author = {Yolanda Gil and Varun Ratnakar},
  title = {A Comparison of (Semantic) Markup Languages},
  booktitle = {Proceedings of the Fifteenth International Florida Artificial Intelligence Research Society Conference (FLAIRS)}, 
  address = {Pensacola Beach, FL},
  year = {2002},
  pages = {413-418},
  url = {http://trellis.semanticweb.org/expect/web/semanticweb/comparison.html }
}

@article{ tallis-kim-gil-jetai,
 title = {User Studies of Knowledge Acquisition Tools: Methodology and Lessons Learned},
 author = {Marcelo Tallis and Jihie Kim and Yolanda Gil},
 journal = {Journal of Experimental and Theoretical Artificial Intelligence},
 volume = {13}, 
 pages = {359-378},
 year = {2001},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/tallis-kim-gil-jetai.pdf }
 }

@inproceedings{ shaken-k-cap-01,
 title = {Knowledge Entry as Graphical Assembly of Components},
 author = {Peter Clark and John Thompson and Ken Barker and Bruce Porter and Vinay Chaudhi and Andres Rodriguez and Jerome Thomere and Sunil Mishra and Yolanda Gil and Pat Hayes and Thomas Reichherzer},
 booktitle = {Proceedings of the First International Conference on Knowledge Capture (K-CAP)},
 address = {Victoria, British Columbia},
 year = {2001},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/shaken-k-cap-01.pdf }
 }

@inproceedings{kim-gil-ijcai01,
  author = {Jihie Kim and Yolanda Gil},
  title = {Knowledge Analysis on Process Models},
  booktitle = {Proceedings of the Seventeenth International Joint Conference on Artificial Intelligence (IJCAI)},
  address = {Seattle, WA},
  year = {2001},
  pages = {935-942},
  url = {http://www.isi.edu/expect/https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/kim-gil-ijcai01.pdf }
}

@inproceedings{elves-iaai01,
  author = {Hans Chalupsky and Yolanda Gil and Craig A. Knoblock and Kristina Lerman and Jean Oh and David V. Pynadath and Thomas A. Russ and Milind Tambe},
  title = {Electric Elves: Applying Agent Technology to Support Human Organizations},
  booktitle = {Proceedings of the Thirteenth Innovative Applications of Artificial Intelligence Conference (IAAI)},
  address = {Seattle, WA},
  year = {2001},
  pages = {51-58},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/elves-iaai01.pdf }
}

@inproceedings{aa01,
  author = {Yolanda Gil and Surya Ramachandran},
  title = {PHOSPHORUS: a task-based agent matchmaker},
  booktitle = {Proceedings of the Fifth International Conference on Autonomous Agents},
  address = "Montreal, Canada",
  year = {2001},
  pages = {110-111},
  ee = {http://portal.acm.org/citation.cfm?id=375735.376015},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/aa01.pdf }
}

@inproceedings{iui01,
  author = {Jim Blythe and Jihie Kim and Surya Ramachandran and Yolanda Gil},
  title = {An integrated environment for knowledge acquisition},
  booktitle = {Proceedings of the ACM International Conference on Intelligent User Interfaces (IUI)},
  year = {2001},
  pages = {13-20},
  ee = {http://doi.acm.org/10.1145/359784.359819},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/iui01.pdf }
}

@inproceedings{kim-gil-aaai00,
  author = {Jihie Kim and Yolanda Gil},
  title = {Acquiring Problem-Solving Knowledge from End Users: Putting Interdependency Models to the Test},
  booktitle = {Proceedings of the Seventeenth National Conference on Artificial Intelligence (AAAI)},
  address = {Austin, TX},
  year = {2000},
  pages = {223-229},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/kim-gil-aaai00.pdf }
}

@inproceedings{gil-blythe-planet-aaai00, 
  title = {PLANET: A Shareable and Reusable Ontology for Representing Plans},
  author = {Yolanda Gil and Jim Blythe},
  year = "2000",
  booktitle = "AAAI Workshop on Representational Issues for Real-World Planning Systems",
  address = "Austin, TX"
}

@inproceedings{ gil-blythe-aaai00,
 title = {How Can a Structured Representation of Capabilities Help in Planning?},
 author = {Yolanda Gil and Jim Blythe},
 booktitle = {AAAI 2000 Workshop on Representational Issues for Real-world Planning Systems},
 address = {Austin, TX},
 year = {2000}
 }

@inproceedings{DBLP:conf/iui/KimG00,
  author = {Jihie Kim and Yolanda Gil},
  title = {User studies of an interdependency-based interface for acquiring problem-solving knowledge},
  booktitle = {IUI},
  year = {2000},
  pages = {165-168},
  ee = {http://doi.acm.org/10.1145/325737.325817}
}

@inproceedings{kim-gil-aaai99,
  author = {Jihie Kim and Yolanda Gil},
  title = {Deriving Expectations to Guide Knowledge Base Creation},
  booktitle = {Proceedings of the Sixteenth National Conference on Artificial Intelligence (AAAI)},
  year = {1999},
  address = "Orlando, FL",
  pages = {235-241},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/kim-gil-aaai99.pdf }
}

@inproceedings{tallis-gil-aaai99,
  author = {Marcelo Tallis and Yolanda Gil},
  title = {Designing Scripts to Guide Users in Modifying Knowledge-based Systems},
  booktitle = {Proceedings of the Sixteenth National Conference on Artificial Intelligence (AAAI)},
  year = {1999},
  pages = {242-249},
  address = "Orlando, FL",
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/tallis-gil-aaai99.pdf }
}

@incollection {valente-etal-99, 
  title = {On the Role of Humans in Enterprise Control Systems: the Experience of INSPECT},
  author = {Andre Valente and James Blythe and Yolanda Gil and William Swartout},
  year = {1999},
  booktitle = "First DARPA-JFACC Symposium on Advances in Enterprise Control",
  address = "San Diego, CA"
}

@inproceedings{gil-tallis-aaai97,
  author = {Yolanda Gil and Marcelo Tallis},
  title = {A Script-Based Approach to Modifying Knowledge Bases},
  booktitle = {Proceedings of the Fourteenth National Conference on Artificial Intelligence (AAAI)},
  year = {1997},
  pages = {377-383},
  address = "Providence, RI",
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-tallis-aaai97.pdf }
}

@inproceedings{gil-melz-aaai96,
  author = {Yolanda Gil and Eric Melz},
  title = {Explicit Representations of Problem-Solving Strategies to Support Knowledge Acquisition},
  booktitle = {Proceedings of the Thirteenth National Conference on Artificial Intelligence (AAAI)},
  address = "Portland, OR",
  year = {1996},
  pages = {469-476},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-melz-aaai96.pdf }
}

@inproceedings{gil-aips96,
  author = {Yolanda Gil},
  title = {Planning Experiments: Resolving Interactions between Two Planning Spaces},
  booktitle = {Proceedings of the Third International Conference on Artificial Intelligence Planning Systems (AIPS)},
  address = "Edinburgh, Scotland",
  year = {1996},
  pages = {102-109},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-aips96.pdf }
}

@inproceedings{dl96,
  author = {Yolanda Gil and Pedro A. Gonz{\'a}lez},
  title = {Subsumption-Based Matching: Bringing Semantics to Goals},
  booktitle = {Proceedings of the International Workshop on Description Logics (DL)},
  address = "Cambridge, MA",
  year = {1996},
  pages = {116-118},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/dl96.pdf }
}

@incollection {gil-swartout-96, 
  title = {EXPECT: A User-Centered Environment for the Development and Adaptation of Knowledge-Based Planning Aids},
  author = {Yolanda Gil and William Swartout},
  year = {1996},
  booktitle = {Advanced Planning Technology: Technological Achievements of the ARPA/Rome Laboratory Planning Initiative, Austin Tate (Ed)},
  publisher = "AAAI Press",
  address = "Menlo Park, CA"
}

@incollection {carbonell-etal-95, 
  title = {Planning and Learning in Prodigy: Overview of an Integrated Architecture},
  author = {Jaime Carbonell and Oren Etzioni and Yolanda Gil and Robert Joseph and Craig Knoblock and Steven Minton and Manuela Veloso},
  year = {1995},
  chapter = "11",
  booktitle = {Goal-Driven Learning},
  editor = {Ashwin Ram and David B. Leake},
  address = "Cambridge, MA",
  publisher = "MIT Press",
  pages = "297--306"
}

@article {paris-gil-kaj94, 
  title = {Towards Method-Independent Knowledge Acquisition},
  author = {Cecile Paris and Yolanda Gil},
  journal = {Knowledge Acquisition},
  volume = {6},
  number = {2},
  year = {1994},
}

@inproceedings{gil-aaai94,
  author = {Yolanda Gil},
  title = {Knowledge Refinement in a Reflective Architecture},
  booktitle = {Proceedings of the Twelfth National Conference on Artificial Intelligence (AAAI)},
  year = {1994},
  pages = {520-526}
}

@inproceedings{gil-mlc94,
  author = {Yolanda Gil},
  title = {Learning by Experimentation: Incremental Refinement of Incomplete Planning Domains},
  booktitle = {Proceedings of the Eleventh International Machine Learning Conference (ICML)},
  address = {Rutgers, NJ},
  year = {1994},
  pages = {87-95},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-mlc94.pdf }
}

@inproceedings{gil-mlc93,
  author = {Yolanda Gil},
  title = {Efficient Domain-Independent Experimentation},
  booktitle = {Proceedings of the Tenth International Machine Learning Conference (ICML)},
  address = {Amherst, MA}, 
  year = {1993},
  pages = {128-134},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-mlc93.pdf }
}

@article{carbonell-etal-sigart91,
  author = {Jaime G. Carbonell and Oren Etzioni and Yolanda Gil and Robert Joseph and Craig A. Knoblock and Steven Minton and Manuela M. Veloso},
  title = {PRODIGY: An Integrated Architecture for Planning and Learning},
  journal = {SIGART Bulletin},
  volume = {2},
  number = {4},
  year = {1991},
  pages = {51-55}
}

@inproceedings{gil-mlc91,
  author = {Yolanda Gil},
  title = {A Domain-Independent Framework for Effective Experimentation in Planning},
  booktitle = {Proceedings of the Eight International Conference on Machine Learning (ICML)},
  address = {Evanston, IL},
  year = {1991},
  pages = {13-17},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-mlc91.pdf }
}

@incollection{gil-mlbook-90, 
  title = {Learning by Experimentation: The Operator Refinement Method},
  author = {Yolanda Gil and Jaime Carbonell},
  year = {1990},
  booktitle = {Machine Learning: An Artificial Intelligence Approach, Volume III, Michalski, R. S. and Kodratoff, Y. (Eds.)},
  address = "San Mateo, CA",
  publisher = "Morgan Kaufmann"
}

@article{minton-etal-aij89, 
  title = {Explanation-Based Learning: A Problem-Solving Perspective},
  author = {Steve Minton and Jaime G. Carbonell and Craig Knoblock and Daniel R. Kuokka and Oren Etzioni and Yolanda Gil},
  year = {1989},
  journal = {Artificial Intelligence},
  volume = {40}, 
  number = {1/3},
  pages = {63-118},
  url={http://dx.doi.org/10.1016/0004-3702(89)90047-7}
}