@inproceedings{brinkley-etal-iui-2023,
  title = {Reproducibility as a Stepping Stone to Intelligent Assistants for Data Analysis: Recreating a Study of Physical Activity, Sleep, and Work Shift in Nurses},
  author = {Detravious J. Brinkley and Emmanuel Johnson and Tiantian Feng and Yolanda Gil},
  booktitle = {Proceedings of the 28th Annual ACM Conference on Intelligent User Interfaces (IUI)},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/brikley-etal-iui-2023.pdf},
  year = 2023
}  

@incollection{gil-chapter-23, 
  title = {Towards Reflection Competencies in Intelligent Systems for Science},
  author = {Yolanda Gil},
  year      = {2023},
  booktitle = {Artificial Intelligence for Science: A Deep Learning Revolution}, 
  editors = {Alok Choudhary and Geoffrey Fox and Tony Hey}, 
  publisher = {World Scientific, London, UK},
  ee = {https://doi.org/10.1142/13123},
    url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/Gil-Chapter-2023.pdf}
}

@article{schaffhauser-etal-cgj23,
  title =  {A Framework for Broad Dissemination of Hydrological Models to Non-Expert Users},
  author = {Timo Schaffhauser and Daniel Garijo and Maximiliano Osorio and Daniel Bittner and Suzanne Pierce and Hernan Vargas and Markus Disse and Yolanda Gil},
  journal = {Computers and Geosciences},
  year = {2023}
}

@article{khider-etal-ppj22,
  title =  {Pyleoclim: Paleoclimate Timeseries Analysis and Visualization with Python},
  author = {Deborah Khider and Julien Emile-Geay and Feng Zhu and Alexander James and Jordan Landers and Varun Ratnakar and Yolanda Gil},
  journal = {Paleoceanography and Paleoclimatology},
  ee = {https://doi.org/10.1002/essoar.10511883.2},
  year = {2022}
}

@incollection{mookerjee-etal-gsa22, 
  title = {Cyberinfrastructure for collecting and integrating geology field data: Community priorities and research agenda},
  author = {Matty Mookerjee and Marjorie A. Chan and Yolanda Gil and Gurman Gill and Charles Goodwin 
and Terry L. Pavlis and Thomas F. Shipley and Taylor Swain and Basil Tikoff and Daniel Vieira},
  year      = {2022},
  booktitle = {Recent Advancements in Geoinformatics and Data Science: Geological Society of America Special Paper 558}, 
  editors = {Xiaogang Ma and Matty Mookerjee and Leslie Hsu and Denise Hills}, 
  publisher = {Geological Society of America},
  ee = {https://doi.org/10.1130/2022.2558(01)}
}

@inproceedings{gil-etal-cogsci-2022,
  title = {Towards Capturing Scientific Reasoning to Automate Data Analysis},
  author = {Yolanda Gil and Deborah Khider and Maximiliano Osorio and Varun Ratnakar and Hernan Vargas and Daniel Garijo and Suzanne Pierce},
  booktitle = {Proceedings of the 44th Annual Conference of the Cognitive Science Society (CogSci)},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-cogsci-2022.pdf},
  year = 2022
}  

@inproceedings{berhanu-etal-siaia-2022,
  title = {An AI Approach to Integrating Climate, Hydrology, and Agriculture Models},
  author = {Belete Berhanu and Ethiopia Bisrat and Yolanda Gil and Deborah Khider and Maximiliano Osorio and Varun Ratnakar and Hernan Vargas},
  booktitle = {Proceedings of the First International Workshop on Social Impact of AI for Africa (SIAIA), held at the 36th Annual Conference of the Association for the Advancement of Artificial Intelligence (AAAI-22)},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/berhanu-etal-siaia-2022.pdf},
  year = 2022
}  

@article{gil-aaai-presidentialaddress-2021,
  title =  {Will AI Write Scientific Papers in the Future?},
  author = {Yolanda Gil},
  journal = {AI Magazine},
  volume=42,
  number=4,
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-aaai-presidentialaddress-2021.pdf},
  ee = {https://doi.org/10.1609/aaai.12027},
  year = {2021}
}

@article{gil-hdsr2021,
  title =  {More Computing and Less Programming: A Proposal to Broaden Participation in Data Science},
  author = {Yolanda Gil},
  journal = {Harvard Data Science Review},
  volume=3,
  number=2,
  ee = {https://doi.org/10.1162/99608f92.e17f42f3},
  year = {2021}
}

@article{gil-etal-tiis2021,
  title = {Artificial Intelligence for Modeling Complex Systems: Taming the Complexity of Expert Models to Improve Decision Making},
  author = {Yolanda Gil and Daniel Garijo and Deborah Khider and Craig A. Knoblock and Varun Ratnakar and Maximiliano Osorio and Hern�n Vargas and Minh Pham and Jay Pujara and Basel Shbita and  Binh Vu and Yao-Yi Chiang and Dan Feldman and Yijun Lin and Hayley Song and Vipin Kumar and Ankush Khandelwal and Michael Steinbach and Kshitij Tayal and Shaoming Xu and Suzanne A. Pierce and Lissa Pearson and Daniel Hardesty-Lewis and Ewa Deelman and Rafael Ferreira da Silva and Rajiv Mayani and Armen R. Kemanian and Yuning Shi and Lorne Leonard and Scott Peckham and Maria Stoica and Kelly Cobourn and Zeya Zhang and Christopher Duffy and Lele Shu},
  journal = {ACM Transactions on Interactive Intelligent Systems (TiiS)},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-tiis2021.pdf},
  ee = {https://doi.org/10.1145/3453172},
  volume=11,
  number=2,
  year = 2021
}

@article{ahn-etal-can2021,
  title =  {Predicting Youth at High Risk of Aging Out of Foster Care using Machine Learning Methods},
  author = {Eunhye Ahn and Yolanda Gil and Emily Putnam-Horstein},
  journal = {Child Abuse and Neglect},
  volume=117,
  ee = {https://doi.org/10.1016/j.chiabu.2021.105059},
  year = {2021}
}

@inproceedings{khider-etal-milets20,
  title = {Towards Automating Time Series Analysis for the Paleogeosciences},
  author = {Deborah Khider and Pratheek Athreya and Varun Ratnakar and Yolanda Gil and Feng Zhu and Myron Kwan and Julien Emile-Geay},
  booktitle = {Proceedings of the Sixth Workshop on Mining and Learning from Time Series (MiLeTS), held in conjunction with the 26th ACM SIGKDD Conference on Knowledge Discovery and Datamining (KDD'20)},
  address = {San Diego, CA},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/khider-etal-milets20.pdf},
  year = 2020
}  

@article{goble-etal-20,
author = {Carole Goble, Sarah Cohen-Boulakia, Stian Soiland-Reyes, Daniel Garijo, Yolanda Gil, Michael R. Crusoe, Kristian Peters, Daniel Schoberhidden},
title = {FAIR Computational Workflows},
journal = {Data Intelligence, Special Issue on FAIR (Findable, Accessible, Interoperable and Reusable) Principles},
volume = {2},
number = {1-2},
doi = {10.1162/dint_a_00033},
ee = {http://doi.org/10.1162/dint_a_00033},
year = {2020}
}

@article {grasby-science20,
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	Colodro-Conde, Luc{\'\i}a and Bralten, Janita and Hibar, Derrek P. and 
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	Atkins, Joshua R. and Bernard, Manon and Brouwer, Rachel M. and 
	Buimer, Elizabeth E. L. and B{\"u}low, Robin and B{\"u}rger, Christian and 
	Cannon, Dara M. and Chakravarty, Mallar and Chen, Qiang and 
	Cheung, Joshua W. and Couvy-Duchesne, Baptiste and Dale, Anders M. and 
	Dalvie, Shareefa and de Araujo, T{\^a}nia K. and de Zubicaray, Greig I. and 
	de Zwarte, Sonja M. C. and den Braber, Anouk and Doan, Nhat Trung and 
	Dohm, Katharina and Ehrlich, Stefan and Engelbrecht, Hannah-Ruth and 
	Erk, Susanne and Fan, Chun Chieh and Fedko, Iryna O. and Foley, Sonya F. and 
	Ford, Judith M. and Fukunaga, Masaki and Garrett, Melanie E. and Ge, Tian and 
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}

@Article{Thompson-etal-tp2020,
title={ENIGMA and global neuroscience: A decade of large-scale studies of the brain in health and disease across more than 40 countries},
journal={Nature Translational Psychiatry},
year={2020},
volume={10},
number={1},
pages={100},
author={Thompson, Paul M.
and Jahanshad, Neda
and Ching, Christopher R. K.
and Salminen, Lauren E.
and Thomopoulos, Sophia I.
and Bright, Joanna
and Baune, Bernhard T.
and Bertol{\'i}n, Sara
and Bralten, Janita
and Bruin, Willem B.
and B{\"u}low, Robin
and Chen, Jian
and Chye, Yann
and Dannlowski, Udo
and de Kovel, Carolien G. F.
and Donohoe, Gary
and Eyler, Lisa T.
and Faraone, Stephen V.
and Favre, Pauline
and Filippi, Courtney A.
and Frodl, Thomas
and Garijo, Daniel
and Gil, Yolanda
and Grabe, Hans J.
and Grasby, Katrina L.
and Hajek, Tomas
and Han, Laura K. M.
and Hatton, Sean N.
and Hilbert, Kevin
and Ho, Tiffany C.
and Holleran, Laurena
and Homuth, Georg
and Hosten, Norbert
and Houenou, Josselin
and Ivanov, Iliyan
and Jia, Tianye
and Kelly, Sinead
and Klein, Marieke
and Kwon, Jun Soo
and Laansma, Max A.
and Leerssen, Jeanne
and Lueken, Ulrike
and Nunes, Abraham
and Neill, Joseph O'
and Opel, Nils
and Piras, Fabrizio
and Piras, Federica
and Postema, Merel C.
and Pozzi, Elena
and Shatokhina, Natalia
and Soriano-Mas, Carles
and Spalletta, Gianfranco
and Sun, Daqiang
and Teumer, Alexander
and Tilot, Amanda K.
and Tozzi, Leonardo
and van der Merwe, Celia
and Van Someren, Eus J. W.
and van Wingen, Guido A.
and V{\"o}lzke, Henry
and Walton, Esther
and Wang, Lei
and Winkler, Anderson M.
and Wittfeld, Katharina
and Wright, Margaret J.
and Yun, Je-Yeon
and Zhang, Guohao
and Zhang-James, Yanli
and Adhikari, Bhim M.
and Agartz, Ingrid
and Aghajani, Moji
and Aleman, Andr{\'e}
and Althoff, Robert R.
and Altmann, Andre
and Andreassen, Ole A.
and Baron, David A.
and Bartnik-Olson, Brenda L.
and Marie Bas-Hoogendam, Janna
and Baskin-Sommers, Arielle R.
and Bearden, Carrie E.
and Berner, Laura A.
and Boedhoe, Premika S. W.
and Brouwer, Rachel M.
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and de Zwarte, Sonja M. C.
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and Dima, Danai
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and Fairchild, Graeme
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and Francks, Clyde
and Frangou, Sophia
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and Gurholt, Tiril P.
and Gutman, Boris A.
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and Hillary, Frank G.
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and Jalbrzikowski, Maria
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and Klapwijk, Eduard T.
and Knickmeyer, Rebecca C.
and Kochunov, Peter
and Koerte, Inga K.
and Kong, Xiang-Zhen
and Liew, Sook-Lei
and Lin, Alexander P.
and Logue, Mark W.
and Luders, Eileen
and Macciardi, Fabio
and Mackey, Scott
and Mayer, Andrew R.
and McDonald, Carrie R.
and McMahon, Agnes B.
and Medland, Sarah E.
and Modinos, Gemma
and Morey, Rajendra A.
and Mueller, Sven C.
and Mukherjee, Pratik
and Namazova-Baranova, Leyla
and Nir, Talia M.
and Olsen, Alexander
and Paschou, Peristera
and Pine, Daniel S.
and Pizzagalli, Fabrizio
and Renter{\'i}a, Miguel E.
and Rohrer, Jonathan D.
and S{\"a}mann, Philipp G.
and Schmaal, Lianne
and Schumann, Gunter
and Shiroishi, Mark S.
and Sisodiya, Sanjay M.
and Smit, Dirk J. A.
and S{\o}nderby, Ida E.
and Stein, Dan J.
and Stein, Jason L.
and Tahmasian, Masoud
and Tate, David F.
and Turner, Jessica A.
and van den Heuvel, Odile A.
and van der Wee, Nic J. A.
and van der Werf, Ysbrand D.
and van Erp, Theo G. M.
and van Haren, Neeltje E. M.
and van Rooij, Daan
and van Velzen, Laura S.
and Veer, Ilya M.
and Veltman, Dick J.
and Villalon-Reina, Julio E.
and Walter, Henrik
and Whelan, Christopher D.
and Wilde, Elisabeth A.
and Zarei, Mojtaba
and Zelman, Vladimir
and Consortium, for the ENIGMA},
doi={10.1038/s41398-020-0705-1},
ee={http://doi.org/10.1038/s41398-020-0705-1}
}

@article{khider-etal-paleo19,
author = {Khider, D. and Emile-Geay, J. and McKay, N. P. and Gil, Y. and Garijo, D. and Ratnakar, V. and Alonso-Garcia, M. and Bertrand, S. and Bothe, O. and Brewer, P. and Bunn, A. and Chevalier, M. and Comas-Bru, L. and Csank, A. and Dassi\'e, E. and DeLong, K. and Felis, T. and Francus, P. and Frappier, A. and Gray, W. and Goring, S. and Jonkers, L. and Kahle, M. and Kaufman, D. and Kehrwald, N. M. and Martrat, B. and McGregor, H. and Richey, J. and Schmittner, A. and Scroxton, N. and Sutherland, E. and Thirumalai, K. and Allen, K. and Arnaud, F. and Axford, Y. and Barrows, T. and Bazin, L. and Pilaar Birch, S. E. and Bradley, E. and Bregy, J. and Capron, E. and Cartapanis, O. and Chiang, H.-W. and Cobb, K. M. and Debret, M. and Dommain, R. and Du, J. and Dyez, K. and Emerick, S. and Erb, M. P. and Falster, G. and Finsinger, W. and Fortier, D. and Gauthier, Nicolas and George, S. and Grimm, E. and Hertzberg, J. and Hibbert, F. and Hillman, A. and Hobbs, W. and Huber, M. and Hughes, A. L. C. and Jaccard, S. and Ruan, J. and Kienast, M. and Konecky, B. and Le Roux, G. and Lyubchich, V. and Novello, V. F. and Olaka, L. and Partin, J. W. and Pearce, C. and Phipps, S. J. and Pignol, C. and Piotrowska, N. and Poli, M.-S. and Prokopenko, A. and Schwanck, F. and Stepanek, C. and Swann, G. E. A. and Telford, R. and Thomas, E. and Thomas, Z. and Truebe, S. and von Gunten, L. and Waite, A. and Weitzel, N. and Wilhelm, B. and Williams, J. and Williams, J. J. and Winstrup, M. and Zhao, N. and Zhou, Y.},
title = {PaCTS 1.0: A Crowdsourced Reporting Standard for Paleoclimate Data},
journal = {Paleoceanography and Paleoclimatology},
volume = {34},
number = {10},
doi = {10.1029/2019PA003632},
ee = {http://doi.org/10.1029/2019PA003632},
year = {2019}
}

@article{gil-selman-19,
author = {Yolanda Gil and Bart Selman},
title = {A 20-Year Community Roadmap for Artificial Intelligence Research in the US},
journal = {Computing Community Consortium (CCC) and Association for the Advancement of Artificial Intelligence (AAAI) report published in arXiv},
ee = {https://arxiv.org/abs/1908.02624v1},
year = {2019}
}

@article{ gil-etal-cacm19,
  title = {Intelligent Systems for Geosciences: An Essential Research Agenda},
  author = {Yolanda Gil and Suzanne Pierce and Hassan Babaie and Arindam Banerjee 
  and Kirk Borne and Gary Bust and Michelle Cheatham and Imme Ebert-Uphoff 
  and Carla Gomes and Mary Hill and John Horel and Leslie Hsu and Jim Kinter 
  and Craig Knoblock and David Krum and Vipin Kumar and Pierre Lermusiaux 
  and Yan Liu and Chris North and Victor Pankratius and Shanan Peters 
  and Beth Plale and Allen Pope and Sai Ravela and Juan Restrepo and Aaron Ridley 
  and Hanan Samet and Shashi Shekhar and Katie Skinner and Padhraic Smyth 
  and Basil Tikoff and Lynn Yarmey and and Jia Zhang},
  journal = {Communications of the ACM},
  volume = {62},
  issue = {1},
  ee = {http://doi.org/10.1145/3192335},
  doi = {10.1145/3192335},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-cacm19.pdf},
  year = {2019}
}

@inproceedings{cen-etal-iaqvec19,
author = {Lingkai Cen and Joon-Ho Choi and Xiaomeng Yao and Yolanda Gil and Shrikanth Narayanan and Maryann Pentz},
title = {A Personal Visual Comfort Model: Predict an Individual\textquotesingle s Visual Comfort Using Occupant Eye Pupil Sizes and Machine Learning},
booktitle = {Tenth International Conference on Indoor Air Quality, Ventilation and Energy Conservation in Buildings, IOP Conference Series in Materials Science and Engineering (609)4},
address = {Bari, Italy},
year = {2019}
}

@inproceedings{garijo-etal-escience19,
author = {Daniel Garijo and Maximiliano Osorio and Deborah Khider and Varun Ratnakar and Yolanda Gil},
title = {OKG-Soft: An Open Knowledge Graph with Machine Readable Scientific Software Metadata},
booktitle = {Proceedings of the Fifteenth International IEEE eScience Conference},
address = {San Diego, CA},
year = {2019}
}

@inproceedings{carrillo-et-al-sciknow19,
  title = {Semantic Workflows and Machine Learning for the Assessment of Carbon Storage by Urban Trees},
  author = {Carrillo Garcia, Juan Manuel and Daniel Garijo and Mark Crowley and Rober Carrillo and Yolanda Gil and Katherine Borda},
  booktitle = {Proceedings of the Third Workshop on Capturing Scientific Knowledge (SciKnow), held in conjunction with the 2019 ACM International Conference on Knowledge Capture (K-CAP'19)},
  address = {Los Angeles, CA},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/carrillo-et-al-sciknow19.pdf},
  year = 2019
}

@inproceedings{garijo-etal-dmah19,
  title = {Towards Automated Hypothesis Testing in Neuroscience},
  author = {Daniel Garijo and Shobeir Fakhraei and Varun Ratnakar and Qifan Yang and Hanna Endrias and Yibo Ma and Regina Wang and Michael Bornstein and Joanna Bright and Yolanda Gil and Neda Jahanshad},
  booktitle = {Proceedings of the Fifth Workshop on Data Management and Analytics for Medicine and Healthcare (DMAH), held in conjunction with the 45th International Conference on Very Large Data Bases (VLDB)},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/garijo-et-al-dmah19.pdf},
  Year = 2019
}

@inproceedings{gil-etal-iui19,
  author = {Yolanda Gil and James Honaker and Shikhar Gupta and Yibo Ma and Vito D\textquotesingle Orazio and Daniel Garijo and Shruti Gadewar and Qifan Yang and Neda Jahanshad},
  title = {Towards Human-Guided Machine Learning},
  booktitle = {Proceedings of the 24th ACM International Conference on Intelligent User Interfaces (IUI)},
  address = {Marina del Rey, CA},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-iui19.pdf},
  ee = {http://doi.org/10.1145/3301275.3302324},
  doi = {110.1145/3301275.3302324},
  year = {2019}
}

@inproceedings{srivastava-etal-psb19,
  author = {Arunima Srivastava and Ravali Adusumilli and Hunter Boyce and Daniel Garijo and Varun Ratnakar and Rajiv Mayani and Thomas Yu and Raghu Machiraju and Yolanda Gil and Parag Mallick},
  title = {Semantic Workflows for Benchmark Challenges: Enhancing Comparability, Reusability and Reproducibility},
  booktitle = {Proceedings of the Pacific Symposium on Biocomputing (PSB)},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/srivastava-etal-psb19.pdf},
  ee = {https://psb.stanford.edu/psb-online/proceedings/psb19/srivastava.pdf},
  year = {2019}
}

@article{gundersen-etal-aimagazine18,
  title = {On Reproducible AI: Towards Reproducible Research, Open Science, and Digital Scholarship in AI Publications},
  author = {Odd Erik Gundersen and Yolanda Gil and David W. Aha},
  journal = {AI Magazine},
  volume = {39},
  issue = {3},
  ee = {http://doi.org/10.1609/aimag.v39i3.2816},
  doi = {10.1609/aimag.v39i3.2816},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gundersen-etal-aimagazine18.pdf},
  year = {2018}
}

@inproceedings{cheong-etal-wi18,
  author = {Ken Cheong and Daniel Garijo and William K. Cheung and Yolanda Gil},
  title = {PSM-Flow: Probabilistic Subgraph Mining for Discovering Reusable Fragments in Workflows},
  booktitle = {Proceedings of IEEE/WIC/ACM International Conference on Web Intelligence (WI-18)},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/cheong-etal-wi18.pdf},
  address = {Santiago, Chile},
  year = {2018}
}

@inproceedings{mcmahon-etal-incf18,
  author = {Agnes McMahon and Daniel Garijo and Ryan Espiritu and Faisal Rashid and MiHyun Jang and Tejal Patted and Varun Ratnakar and Yolanda Gil and Paul Thompson and Neda Jahanshad},
  title = {ENIGMA-ODS: A Platform for Global Neuroscience Collaborations in the ENIGMA Consortium},
  booktitle = {INCF Neuroinformatics Congress},
  address = {Montreal, Canada},
  year = {2018}
}

@article{geay-etal-pages18,
  title = {LinkedEarth: Supporting Paleoclimate Data Standards and Crowd Curation},
  author = {Julien Emile-Geay and Deborah Khider and Nicholas P. McKay and Yolanda Gil and Daniel Garijo and Varun Ratnakar},
  journal = {Past Global Changes Magazine},
  volume = {26},
  issue = {2},
  ee = {http://doi.org/10.22498/pages.26.2.62},
  doi = {10.22498/pages.26.2.62},
  year = {2018}
}

@inproceedings{carvalho-etal-escience18,
  author = {Lucas Carvalho and Daniel Garijo and Claudia Bauzer Medeiros and Yolanda Gil},
  title = {Semantic Software Metadata for Workflow Exploration and Evolution},
  booktitle = {Proceedings of the Fourteenth IEEE International Conference on eScience},
  address = {Amsterdam, The Netherlands},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/carvalho-etal-escience18.pdf},
  doi = {https://doi.org/10.1109/eScience.2018.00132},
  year = {2018}
}

@inproceedings{gil-etal-automl18,
  title = {P4ML: A Phased Performance-Based Pipeline Planner for Automated Machine Learning},
  author = {Yolanda Gil and Ke-Thia Yao and Varun Ratnakar and Daniel Garijo and Greg Ver Steeg and Pedro Szekely and Rob Brekelmans and Mayank Kejriwal and Fanghao Luo and I-Hui Huang},
  booktitle = {Proceedings of Machine Learning Research, ICML 2018 AutoML Workshop},
  year = {2018},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-automl18.pdf}
}

@inproceedings{gil-etal-iemss18,
  author = {Yolanda Gil and Kelly Cobourn and Ewa Deelman and Chris Duffy and Rafael Ferreira da Silva and 
Armen Kemanian and Craig Knoblock and Vipin Kumar and Scott Peckham and Lucas Carvalho and 
Yao-Yi Chiang and Daniel Garijo and Deborah Khider and Ankush Khandelwal and Minh Pahm and  
Jay Pujara and Varun Ratnakar and Maria Stoica and Binh Vu},
  title = {MINT: Model Integration Through Knowledge-Powered Data and Process Composition},
  booktitle = {Proceedings of the Ninth International Congress on Environmental Modeling and Software},
  address = {Ft Collins, CO},
  year = {2018},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-iemss18.pdf}
}

@inproceedings{ferreira-etal-iemss18,
  author = {Rafael Ferreira da Silva and Daniel Garijo and Scott D. Peckham and Yolanda Gil and Ewa Deelman and Varun Ratnakar},
  title = {Towards Model Integration via Abductive Workflow Composition and Multi-Method Scalable Model Execution},
  booktitle = {Proceedings of the Ninth International Congress on Environmental Modeling and Software},
  address = {Ft Collins, CO},
  year = {2018},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/ferreira-etal-iemss18.pdf}
}

@inproceedings{garijo-etal-iemss18,
  author = {Daniel Garijo and Deborah Khider and Yolanda Gil and Lucas Carvalho and Bakinam Essawy and Suzanne Pierce 
  	and Daniel H. Lewis and Varun Ratnakar and Scott D. Peckham and Chris Duffy and Jonathan Goodall},
  title = {A Semantic Model Registry to Support Comparison and Reuse},
  booktitle = {Proceedings of the Ninth International Congress on Environmental Modeling and Software},
  address = {Ft Collins, CO},
  year = {2018}
}

@article{ gil-ds17,
  title = {Thoughtful Artificial Intelligence: Forging A New Partnership for Data Science and Scientific Discovery},
  author = {Yolanda Gil },
  journal = {Data Science},
  volume = {1},
  issue = {1-2},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-ds17.pdf},
  ee = {http://doi.org/10.3233/DS-170011},
  doi = {10.3233/DS-170011},
year = {2017}
}

@inproceedings{ garijo-etal-sciknow2017,
  title = {The DISK Hypothesis Ontology: Capturing Hypothesis Evolution for Automated Discovery},
  author = {Daniel Garijo and Yolanda Gil and Varun Ratnakar},
  booktitle = {Proceedings of the Workshop on Capturing Scientific Knowledge (SciKnow), 
  held in conjunction with the ACM International Conference on Knowledge Capture (K-CAP)},
  address = {Austin, Texas},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/garijo-etal-sciknow2017.pdf },
  year = {2017}
}

@inproceedings{ carvalho-etal-sciknow2017b,
  title = {NiW: Converting Notebooks into Workflows to Capture Dataflow and Provenance},
  author = {Lucas A. M. C. Carvalho and Regina Wang and Yolanda Gil and Daniel Garijo},
  booktitle = {Proceedings of the Workshop on Capturing Scientific Knowledge (SciKnow), 
  held in conjunction with the ACM International Conference on Knowledge Capture (K-CAP)},
  address = {Austin, Texas},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/carvalho-etal-sciknow2017b.pdf },
  year = {2017}
}

@inproceedings{ carvalho-etal-sciknow2017a,
  title = {Requirements for Supporting the Iterative Exploration of Scientific Workflow Variants},
  author = {Lucas A. M. C. Carvalho and Bakinam T. Essawy and Daniel Garijo and Claudia Bauzer Medeiros and Yolanda Gil  },
  booktitle = {Proceedings of the Workshop on Capturing Scientific Knowledge (SciKnow), 
  held in conjunction with the ACM International Conference on Knowledge Capture (K-CAP)},
  address = {Austin, Texas},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/carvalho-etal-sciknow2017a.pdf },
  year = {2017}
}

@inproceedings{ gil-etal-sciknow2017,
  title = {Improving Publication and Reproducibility of Computational Experiments through Workflow Abstractions},
  author = {Yolanda Gil and Daniel Garijo and Margaret Knoblock and Alyssa Deng and 
  Ravali Adusumilli and Varun Ratnakar and Parag Mallick},
  booktitle = {Proceedings of the Workshop on Capturing Scientific Knowledge (SciKnow), 
  held in conjunction with the ACM International Conference on Knowledge Capture (K-CAP)},
  address = {Austin, Texas},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-sciknow2017.pdf},
  year = {2017}
}

@inproceedings{ gil-etal-iswc17,
  title = {A Controlled Crowdsourcing Approach to Scientific Ontology Development and Data Annotation},
  author = {Yolanda Gil and Daniel Garijo and Varun Ratnakar and Deborah Khider and Julien Emile-Geay and Nicholas McKay},
  booktitle = {Proceedings of the Sixteenth International Semantic Web Conference (ISWC)},
  address = {Vienna, Austria},
  ee = {http://doi.org/10.1007/978-3-319-68204-4_24},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-iswc17.pdf},
  year = {2017}
}

@inproceedings{ jang-etal-semsci17,
  title = {Towards Automatic Generation of Portions of Scientific Papers for Large Multi-Institutional Collaborations Based on Semantic Metadata},
  author = {MiHyun Jang and Tejal Patted and Yolanda Gil and Daniel Garijo and Varun Ratnakar and Jie Ji and Prince Wang and Aggie McMahon and Paul M. Thompson and Neda Jahanshad},
  booktitle = {Proceedings of the Workshop on Enabling Open Semantic Science, co-located with the Sixteenth International Semantic Web Conference (ISWC)},
  address = {Vienna, Austria},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/jang-etal-semsci17.pdf },
  ee = {http://ceur-ws.org/Vol-1931/paper-09.pdf},
  year = {2017}
}

@article{ sethi-gil-fgcs17,
  title = {Scientific Workflows in Data Analysis: Bridging Expertise Across
Multiple Domains},
  author = {Ricky Sethi and Yolanda Gil },
  journal = {Future Generation Computer Systems},
  volume = {75},
  ee = {http://doi.org/10.1016/j.future.2017.01.001},
  doi = {10.1016/j.future.2017.01.001},
year = {2017}
}

@article{ garijo-etal-fgcs17,
  title = {Abstract, Link, Publish, Exploit: An End to End Framework for Workflow Sharing},
  author = {Daniel Garijo and Yolanda Gil and Oscar Corcho},
  journal = {Future Generation Computer Systems},
  volume = {75},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/garijo-etal-fgcs17.pdf},
  ee = {http://doi.org/10.1016/j.future.2017.01.008},
  doi = {10.1016/j.future.2017.01.008},
year = {2017}
}

@article{ essawy-etal-ems17,
  title = { Evaluation of the OntoSoft Ontology for Describing Legacy Hydrologic Modeling Software},
  author = {Bakinam T. Essawy and Jonathan L. Goodall and Hao Xu and Yolanda Gil},
  journal = { Environmental Modelling & Software},
  ee = {http://doi.org/10.1016/j.envsoft.2017.01.024},
  doi = {10.1016/j.envsoft.2017.01.024},
volume = 92,
year = {2017}
}

@inproceedings{ gil-garijo-iui17,
  title = {Towards Automating Data Narratives},
  author = {Yolanda Gil and Daniel Garijo},
  booktitle = {Proceedings of the Twenty-Second ACM International Conference on Intelligent User Interfaces (IUI-17)},
  address = {Limassol, Cyprus},
  year = {2017},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-garijo-iui17.pdf },
  doi = {10.1145/3025171.3025193},
  ee = {http://dx.doi.org/10.1145/3025171.3025193}
}

@inproceedings{ gil-etal-aaai17,
  title = {Towards Continuous Scientific Data Analysis and Hypothesis Evolution},
  author = {Yolanda Gil and Daniel Garijo and Varun Ratnakar and Rajiv Mayani and Ravali Adusumilli and Hunter Boyce and Arunima Srivastava and Parag Mallick},
  booktitle = {Proceedings of the Thirty-First AAAI Conference on Artificial Intelligence (AAAI-17)},
  address = {San Francisco, CA},
  year = {2017},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-aaai17.pdf },
  ee = {https://doi.org/10.1609/aaai.v31i1.11157},
  doi = {10.1609/aaai.v31i1.11157}
}

@article{ stodden-etal-science16,
  title = {Enhancing Reproducibility for Computational Methods},
  author = {Victoria Stodden and Marcia McNutt and David H. Bailey and Ewa Deelman and Yolanda Gil and Brooks Hanson and Michael A. Heroux and John P.A. Ioannidis and Michela Taufer},
  journal = {Science},
  ee = {http://dx.doi.org/10.1126/science.aah6168},
  doi = {10.1126/science.aah6168},
  volume = {354},
  issue = {6317},
  year = {2016}
}

@article{ gil-etal-ess16,
  title = {Towards the Geoscience Paper of the Future: Best Practices for Documenting and Sharing Research from Data to Software to Provenance},
  author = {Yolanda Gil and C�dric H. David and Ibrahim Demir and Bakinam T. Essawy and Robinson W. Fulweiler and Jonathan L. Goodall and Leif Karlstrom and Huikyo Lee and Heath J. Mills and Ji-Hyun Oh and Suzanne A Pierce and Allen Pope and Mimi W. Tzeng and Sandra R. Villamizar and Xuan Yu},
  journal = {Earth and Space Science},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-ess16.pdf },
  ee = {http://dx.doi.org/10.1002/2015EA000136},
  doi = {10.1002/2015EA000136},
  volume = {3},
  issue = {10},
  year = {2016}
}

@article{ yu-etal-isj16,
  title = {Cyber-Innovated Watershed Research at the Shale Hills Critical Zone Observatory},
  author = {Xuan Yu and Chris Duffy and Yolanda Gil and Lorne Leonard and Gopal Bhatt and Evan Thomas},
  journal = {IEEE Systems Journal},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/yu-etal-isj16.pdf },
  doi = {10.1109/JSYST.2015.2484219},
  ee = {http://dx.doi.org/10.1109/JSYST.2015.2484219},  
  volume = {10},
  issue = {3},
  year = {2016}
}

@inproceedings{gil-etal-escience16,
  title = {OntoSoft: A Distributed Semantic Registry for Scientific Software},
  author = {Yolanda Gil and Daniel Garijo and Saurabh Mishra and Varun Ratnakar},
  booktitle = {Proceedings of the Twelfth IEEE Conference on eScience},
  address = {Baltimore, MD},
  year = {2016},
  doi = {10.1109/eScience.2016.7870916},
  ee = {http://dx.doi.org/10.1109/eScience.2016.7870916},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-escience16.pdf }
}

@inproceedings{sethi-gil-escience16,
  title = {Reproducibility in Computer Vision: Towards Open Publication of Image Analysis Experiments as Semantic Workflows},
  author = {Ricky J. Sethi and Yolanda Gil},
  booktitle = {Proceedings of the Twelfth IEEE Conference on eScience},
  address = {Baltimore, MD},
  year = {2016},
  doi = {10.1109/eScience.2016.7870918},
  ee = {http://dx.doi.org/10.1109/eScience.2016.7870918},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/sethi-gil-escience16.pdf }
}

@inproceedings{ gil-etal-acs16,
  title = {Automated Hypothesis Testing with Large Scientific Data Repositories},
  author = {Yolanda Gil and Daniel Garijo and Varun Ratnakar and Rajiv Mayani and Ravali Adusumilli and Hunter Boyce and Parag Mallick},
  booktitle = {Proceedings of the Fourth Annual Conference on Advances in Cognitive Systems (ACS)},
  address = {Evanston, IL},
  year = {2016},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-acs16.pdf }
}

@inproceedings{ gil-eaai16,
  title = {Teaching Big Data Analytics Skills with Intelligent Workflow Systems},
  author = {Yolanda Gil},
  booktitle = {Proceedings of the Sixth Symposium on Educational Advances in Artificial Intelligence (EAAI), colocated with the National Conference of the Association for the Advancement of Artificial Intelligence (AAAI)},
  address = {Phoenix, AZ},
  year = {2016},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-eaai16.pdf }
}

@inproceedings{ gil-ratnakar-icsc16,
  title = {Dynamically Generated Metadata and Replanning by Interleaving Workflow Generation and Execution},
  author = {Yolanda Gil and Varun Ratnakar},
  booktitle = {Proceedings of the Tenth IEEE International Conference on Semantic Computing (ICSC)},
  address = {Irvine, CA},
  year = {2016},
  doi = {10.1109/ICSC.2016.89},
  ee = {http://dx.doi.org/10.1109/ICSC.2016.89},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-ratnakar-icsc16.pdf }
}

@misc{is-geo-report-15,
 title = {Final Report of the 2015 NSF Workshop on Intelligent Systems for Geosciences},
 author = {Yolanda Gil and Suzanne Pierce},
 note = {National Science Foundation, Arlington, VA.},
 year = {2015},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/IS-GEO-NSF2015.pdf }
}

@article{ mookerjee-etal-eos2015,
  title = {Field Data Management: Integrating Cyberscience and Geoscience},
  author = { Matty Mookerjee and Daniel Vieira and Marjorie A. Chan and Yolanda Gil and Terry L. Pavlis and Frank S. Spear and Basil Tikoff},
  journal = {Earth and Space Science News},
  volume = {96},
  number = {20},
  doi = {10.1029/2015EO036703},
  ee = {http://dx.doi.org/10.1029/2015EO036703},
  year = {2015}
}

@inproceedings{ jahanshad-etal-scits15,
  title = {Open Science and Collaboration for Enhancing NeuroImaging Genetics through Meta-Analysis (ENIGMA) through the Organic Data Science Framework},
  author = {Neda Jahanshad and Sarah Madsen and Yervand Azatian and Derrek P. Hibar and Paul M. Thompson and Yolanda Gil},
  booktitle = {Science of Team Science Conference (SciTS)},
  address = {Bethesda, MD},
  year = {2015},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/jahanshad-etal-scits15.pdf }
}

@article{ mookerjee-etal-gsatoday2015,
  title = {We Need to Talk: Facilitating communication between field-based geoscience and cyberinfrastructure communities},
  author = { Matty Mookerjee and Daniel Vieira and Marjorie A. Chan and Yolanda Gil and Terry L. Pavlis and Frank S. Spear and Basil Tikoff},
  journal = {GSA Today},
  volume = {25},
  number = {11},
  doi = {10.1130/GSATG248GW.1},
  ee = {http://dx.doi.org/10.1130/GSATG248GW.1},
  year = {2015}
}

@inproceedings{ ebert-uphoff-gil-sciknow15,
  title = {Exploring Synergies between Machine Learning and Knowledge Representation to Capture Scientific Knowledge},
  author = {Imme Ebert-Uphoff and Yolanda Gil},
  booktitle = {First International Workshop on Capturing Scientific Knowledge (SciKnow)},
  address = {Palisades, NY},
  year = {2015},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/ebert-uphoff-gil-sciknow15.pdf }
}

@inproceedings{ gil-etal-wssspe15,
  title = {The Geoscience Paper of the Future Initiative: Training Scientists in Best Practices of Software Sharing},
  author = {Yolanda Gil and Chris Duffy and Chris Mattmann and Erin Robinson and Cedric David and Ibrahim Demir and Bakinam Essawy and Robinson W. Fulweiler and Jon Goodall and Leif Karlstrom and Kyo Lee andHeath Mills and Ji-Hyun Oh and Suzanne Pierce and Allen 
Pope and Mimi Tzeng and Karan Venayagamoorthy and Sandra Villamizar and Xuan Yu},
  booktitle = {Third Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE3)},
  address = {Boulder, CO},
  year = {2015},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-wssspe15.pdf }
}

@inproceedings{ gil-etal-kcap15b,
  title = {OntoSoft: Capturing Scientific Software Metadata},
  author = {Yolanda Gil and Varun Ratnakar and Daniel Garijo},
  booktitle = {Proceedings of the Eighth ACM International Conference on Knowledge Capture},
  address = {Palisades, NY},
  year = {2015},
  doi = {10.1145/2815833.2816955},
  ee = {http://dx.doi.org/10.1145/2815833.2816955},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-kcap2015.pdf }
}

@inproceedings{ gil-etal-kcap15,
  title = {The Provenance Bee Wiki: Tracking the Growth of Semantic Wiki Communities},
  author = { Yolanda Gil and Dipsy Kapoor and Reed Markham and Varun Ratnakar},
  booktitle = {Proceedings of the Eighth ACM International Conference on Knowledge Capture},
  address = {Palisades, NY},
  doi = {10.1145/2815833.2815847},
  ee = {http://dx.doi.org/10.1145/2815833.2815847},
  year = {2015},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-kcap15.pdf }
}

@inproceedings{ mattmann-etal-softmine2015,
  title = {DRAT: An Unobtrusive, Scalable Approach to Large Scale Software License Analysis},
  author = {Chris A. Mattmann and Ji-Hyun Oh and Tyler Palsulich and Lewis John McGibbney and Yolanda Gil and Varun Ratnakar},
  booktitle = {Proceedings of the Fourth International Workshop on Software Mining, held in conjunction with the 30th IEEE/ACM International Conference on Automated Software Engineering (ASE)},
  address = {Lincoln, NE},
  year = {2015},
  doi = {10.1109/ASEW.2015.14},
  ee = {http://dx.doi.org/10.1109/ASEW.2015.14},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/mattmann-etal-softmine2015.pdf }
}

@article{ zheng-etal-gm15,
  title = {Use of Semantic Workflows to Enhance Transparency and Reproducibility in Clinical Omics},
  author = {Christina L Zheng and Varun Ratnakar and Yolanda Gil and Shannon K McWeeney},
  journal = {Genome Medicine},
  volume = {7},
  number = {73},
  year = {2015},
  doi = {10.1186/s13073-015-0202-y},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/zheng-etal-gm15.pdf },
  ee = {http://dx.doi.org/10.1186/s13073-015-0202-y}
}

@inproceedings{ gil-etal-escience15,
  title = {A Task-Centered Framework for Computationally-Grounded Science Collaborations},
  author = { Yolanda Gil and Felix Michel and Varun Ratnakar and Matheus Hauder and Christopher Duffy and Hilary Dugan and Paul Hanson},
  booktitle = {Proceedings of the Eleventh IEEE International Conference on eScience},
  address = {Munich, Germany},
  year = {2015},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-escience15.pdf }
}

@inproceedings{ michel-etal-amcis15,
  title = {A Virtual Crowdsourcing Community for Open Collaboration in Science Processes},
  author = {Felix Michel and Yolanda Gil and Varun Ratnakar and Matheus Hauder},
  booktitle = {Proceedings of the Americas Conference on Information Systems (AMCIS)},
  address = {Puerto Rico},
  year = {2015},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/michel-etal-amcis15.pdf }
}

@inproceedings{ gil-etal-short-eswc15,
  title = {A Semantic, Task-Centered Collaborative Framework for Science},
  author = { Yolanda Gil and Felix Michel and Varun Ratnakar and Matheus Hauder},
  booktitle = {Proceedings of the Twelfth European Semantic Web Conference (ESWC)},
  address = {Portoroz, Slovenia},
  year = {2015},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-short-eswc15.pdf }
}

@inproceedings{gil-etal-eswc15,
  title = {Supporting Open Collaboration in Science through Explicit and Linked Semantic Description of Processes},
  author = { Yolanda Gil and Felix Michel and Varun Ratnakar and Jordan Read and Matheus Hauder and Christopher Duffy and Paul Hanson and Hilary Dugan},
  booktitle = {Proceedings of the Twelfth European Semantic Web Conference (ESWC)},
  address = {Portoroz, Slovenia},
  year = {2015},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-eswc15.pdf }
}

@article{gil-tiis15,
  title = {Human Tutorial Instruction in the Raw},
  author = {Yolanda Gil},
  journal = {ACM Transactions on Interactive Intelligent Systems},
  volume = {5},
  number = {1},
  year = {2015},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-tiis15.pdf }
}

@misc{ gil-ec15,
  title = {EarthCube 2015 Highlights},
  editors = {Yolanda Gil},
  note = {EarthCube Project Report EC-2015-1},
  year = {2015},
  url = {http://earthcube.org/document/2015/2015-highlights}
}

@inproceedings{gil-iui15,
  title = {Organic Data Science: A Task-Centered Interface to On-Line Collaboration in Science},
  author = { Yolanda Gil and Felix Michel and Varun Ratnakar and Matheus Hauder},
  booktitle = {Proceedings of the ACM International Conference on Intelligent User Interfaces},
  address = {Atlanta, GA},
  year = {2015},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-iui15.pdf }
}

@article{burns-etal-aimag14,
  title = {The AAAI Fall Symposium on Discovery Informatics: AI Takes a Science-Centered View on Big Data},
  author = {Gully APC Burns and Yolanda Gil and Natalia Villanueva-Rosales and Yan Liu},
  journal = {AI Magazine},
  volume = {35},
  number = {2},
  year = {2014}
}

@article{das-etal-aimatters14,
  title = {Announcing the SIGAI Career Network and Conference},
  author = {Sanmay Das and Susan L. Epstein and Yolanda Gil},
  journal = {AI Matters},
  volume = {1},
  number = {1},
  year = {2014},
  url = {http://sigai.acm.org/static/aimatters/aimatters-issue-2014-01.pdf},
  ee = {http://dx.doi.org/10.1145/2639475.2649581}
}

@article{gil-aimatters14a,
  title = {Artificial Intelligence: No Longer Just for You and Me},
  author = {Yolanda Gil},
  journal = {AI Matters},
  volume = {1},
  number = {1},
  year = {2014},
  url = {http://sigai.acm.org/static/aimatters/aimatters-issue-2014-01.pdf},
   ee = {http://dx.doi.org/10.1145/2639475.2639477} 
}

@article{gil-aimatters14b,
  title = {Ten Simple Rules for Starting a Research Group},
  author = {Yolanda Gil},
  journal = {AI Matters},
  volume = {1},
  number = {2},
  year = {2014},
  ee = {http://dx.doi.org/10.1145/2685328.2685330},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/StartingAResearchGroup-AIMatters2014.pdf}
}

@misc{ ogc-prov-report-14,
  title = {Open Geospatial Consortium Testbed 10 Provenance Engineering Report},
  author = {Joan Maso and Guillem Closa and Yolanda Gil and Benjamin Pross},
  note = {Open Geospatial Consortium (OGC) Technical Report 14-001},
  year = {2014},
  url = {https://portal.opengeospatial.org/files/?artifact_id=58967}
}

@misc{ gil-geosoft-14,
  title = {EarthCube EC3 2014 Field Trip Report},
  author = {Yolanda Gil},
  note = {Report of the EarthCube Research Coodination Network on \textquotesingle Earth-Centered Communication for Cyberinfrastructure:  Challenges of field data collection, management, and integration \textquotesingle },
  year = {2014},
  url = {EarthCube-EC3-TripReport-2014/}
}

@misc{ gil-etal-ec14,
  title = {EarthCube: Past, Present, and Future},
  author = {Yolanda Gil and Marjorie Chan and Basil Gomez and Bruce Caron (Eds)},
  note = {EarthCube Project Report EC-2014-3},
  year = {2014},
  url = {http://www.earthcube.org/document/earthcube-past-present-and-future}
}

@article{gil-etal-science14,
 title = {Amplify Scientific Discovery with Artificial Intelligence},
 author = {Yolanda Gil and Mark Greaves and James Hendler and Haym Hirsh},
  journal = {Science},
  volume = 346,
  number = 6206,
  pages = {171-172},
  year      = {2014},
  doi = {10.1126/science.1259439},
  ee = {http://dx.doi.org/10.1126/science.1259439}
}

@inproceedings {gil-eduhpc14, 
  title = {Teaching Parallelism Without Programming: A Data Science Curriculum for Non-CS Students},
  author = {Yolanda Gil},
  year      = {2014},
 address = {New Orleans, LA},
  booktitle = {Proceedings of the Workshop on Education for High-Performance Computing (EduHPC), held in conjunction with the IEEE ACM International Conference on High Performance Computing (SC)},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-eduhpc14.pdf }
}

@inproceedings {gil-etal-wssspe14, 
  title = {Collaborative Software Development Needs in Geosciences},
  author = {Yolanda Gil and Eunyoung Moon and James Howison},
  year      = {2014},
 address = {New Orleans, LA},
  booktitle = {Proceedings of the Second Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE2), held in conjunction with the IEEE ACM International Conference on High Performance Computing (SC)},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-wssspe14.pdf }
}

@inproceedings{garijo-etal-works14, 
  title = {Towards Workflow Ecosystems Through Semantic and Standard Representations},
  author = {Daniel Garijo and Yolanda Gil and Oscar Corcho},
  year      = {2014},
 address = {New Orleans, LA},
  booktitle = {Proceedings of the Ninth Workshop on Workflows in Support of Large-Scale Science (WORKS), held in conjunction with the IEEE ACM International Conference on High-Performance Computing (SC)},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/garijo-etal-works14.pdf}
}

@inproceedings{garijo-etal-escience14a, 
  title = {Workflow Reuse in Practice: A Study of Neuroimaging Pipeline Users },
  author = {Daniel Garijo and Oscar Corcho and Yolanda Gil and Meredith N. Braskie and Derrek Hibar and Xue Hua and Neda Jahanshad and Paul Thompson and Arthur W. Toga},
  year      = {2014},
 address = {Guarujua, Brazil},
  booktitle = {Proceedings of the IEEE Conference on e-Science},
  ee = {http://dx.doi.org/10.1109/eScience.2014.33},
  doi = {10.1109/eScience.2014.33},
url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/garijo-etal-escience14a.pdf}
}

@inproceedings{garijo-etal-escience14b, 
  title = {FragFlow: Automated Fragment Detection in Scientific Workflows },
  author = {Daniel Garijo and Oscar Corcho and Yolanda Gil and Boris A. Gutman and Ivo D. Dinov and Paul Thompson and Arthur W. Toga},
  year      = {2014},
 address = {Guarujua, Brazil},
  booktitle = {Proceedings of the IEEE Conference on e-Science},
    ee = {http://dx.doi.org/10.1109/eScience.2014.32},
  doi = {10.1109/eScience.2014.32},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/garijo-etal-escience14b.pdf}
}

@inproceedings{gil-iemss14,
  author = {Yolanda Gil},
  title = {Intelligent Workflow Systems and Provenance-Aware Software},
  booktitle = {Proceedings of the Seventh International Congress on Environmental Modeling and Software},
  address = {San Diego, CA},
  year = {2014},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-iemss14.pdf },
  ee = {http://www.iemss.org/sites/iemss2014/papers/iemss2014_submission_384.pdf}
}

@misc{harth-gil-lgd14,
  author = {Andreas Harth and Yolanda Gil},
  title = {Geospatial Data Integration with Linked Data and Provenance Tracking},
  note = {W3C/OGC Workshop on Linking Geospatial Data},
  address = {London, UK},
  year = {2014},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/harth-gil-lgd14.pdf }
}

@misc{garijo-etal-provanalytics14,
  author = {Daniel Garijo and Yolanda Gil and Andreas Harth},
  title = {User Requirements for Geospatial Provenance},
  note = {Provenance Analytics, co-located with the Fifth International Provenance and Annotation Workshop (IPAW)},
  address = {Cologne, Germany},
  year = {2014},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/garijo-etal-provanalytics14.pdf }
}

@inproceedings{garijo-etal-ipaw14,
  author = {Daniel Garijo and Yolanda Gil and Andreas Harth},
  title = {Challenges in Modeling Geospatial Provenance},
  booktitle = {Proceedings of the Fifth International Provenance and Annotation Workshop (IPAW)},
  address = {Cologne, Germany},
  year = {2014},
  url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/garijo-etal-ipaw14.pdf }
}

@article{ goodmal-etal-ploscompbio14,
 title = {Ten Simple Rules for the Care and Feeding of Scientific Data},
 author = {Alyssa Goodman and Alberto Pepe and Alexander W. Blocker and Christine L. Borgman and Kyle Cranmer and
Merce Crosas and Rosanne Di Stefano and Yolanda Gil and Paul Groth and Margaret Hedstrom and David W. Hogg and Vinay Kashyap and Ashish Mahabal and Aneta Siemiginowska and Aleksandra Slavkovic},
 journal = {PLOS Computational Biology},
  year      = {2014},
   volume = 10,
      issue = 4,
  url = {http://arxiv.org/abs/1401.2134},
  ee = {http://dx.doi.org/10.1371/journal.pcbi.1003542}
 }

@article{bergmann-gil-isj12,
 title = {Similarity Assessment and Efficient Retrieval of Semantic Workflows},
 author = {Ralph Bergmann and Yolanda Gil},
 journal = {Information Systems Journal},
   volume = 40,
  year      = {2014},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/bergmann-gil-isj12.pdf},
   ee = {http://dx.doi.org/10.1016/j.is.2012.07.005}
 }

@misc{mattmann-etal-earthzine13,
  author = {Chris A. Mattmann and Duane Waliser and Jinwon Kim and Paul Ramirez and Cameron Goodale and
Andrew F. Hart and Paul Loikith and Huikyo Lee and Michael Joyce and Maziyar Boustani and
Shakeh Khudikyan and Kim Whitehall and Jesslyn Whittell and Paul Zimdars and Daniel Crichton and
Yolanda Gil and Luca Cinquini},
  title = {Model Evaluation Using the NASA Regional Climate Model Evaluation System (RCMES)},
  note = {IEEE Earthzine},
  year = {2013},
  ee = {http://www.earthzine.org/2013/12/02/model-evaluation-using-the-nasa-regional-climate-model-evaluation-system-rcmes/ }
}

@article{garijo-etal-plosone13, 
  title = {Quantifying Reproducibility in Computational Biology: The Case of the Tuberculosis Drugome},
  author = {Daniel Garijo and Sarah Kinnings and Li Xie and Lei Xie and Yinliang Zhang and Philip E. Bourne and Yolanda Gil},
 journal = {PLOS ONE},
  year      = {2013},
  ee = {http://dx.doi.org/10.1371/journal.pone.0080278}
  }

@inproceedings{gil-etal-works13, 
  title = {Time-Bound Analytic Tasks on Large Datasets through Dynamic Configuration of Workflows},
  author = {Yolanda Gil and Varun Ratnakar and Rishi Verma and Andrew Hart and Paul Ramirez and Chris Mattmann and Arni Sumarlidason and Samuel L. Park},
  year      = {2013},
 address = {Denver, CO},
  booktitle = {Proceedings of the Eighth Workshop on Workflows in Support of Large-Scale Science (WORKS), held in conjunction with SC 2013},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/gil-etal-works13.pdf}
}

@inproceedings{kale-etal-aaaifssdi13, 
  title = {Capturing Data Analysis Expertise with Visualization in Workflows},
  author = {David Kale and Samuel Di and Yan Liu and Yolanda Gil},
  year      = {2013},
 address = {Arlington, Virginia},
  booktitle = {AAAI Fall Symposium on Discovery Informatics: AI Takes a Science-Centered View on Big Data},
 url = {https://knowledgecaptureanddiscovery.github.io/yolanda_gil_website/papers/kale-etal-aaaifss13.pdf}
}

@article{garijo-etal-fgcs13, 
  title = {Common Motifs in Scientific Workflows: An Empirical Analysis},
  author = {Daniel Garijo and Pinar Alper and Khalid Belhajjame and Oscar Corcho and Yolanda Gil and Carole Goble},
  year      = {2013},
 journal = {Future Generation Computer Systems},
  ee = {http://dx.doi.org/10.1016/j.future.2013.09.018}
}