BibBase lilley, k

2023 (3)

The proteomic landscape of genome-wide genetic perturbations. Messner, C. B.; Demichev, V.; Muenzner, J.; Aulakh, S. K.; Barthel, N.; hl , A.; nguez , L.; Egger, A. S.; Kamrad, S.; Hou, J.; Tan, G.; Lemke, O.; Calvani, E.; Szyrwiel, L.; lleder , M.; Lilley, K. S.; Boone, C.; Kustatscher, G.; and Ralser, M. Cell. Apr 2023.
link bibtex

@Article{pmid37080200,
   Author="Messner, C. B.  and Demichev, V.  and Muenzner, J.  and Aulakh, S. K.  and Barthel, N.  and hl, A.  and nguez, L.  and Egger, A. S.  and Kamrad, S.  and Hou, J.  and Tan, G.  and Lemke, O.  and Calvani, E.  and Szyrwiel, L.  and lleder, M.  and Lilley, K. S.  and Boone, C.  and Kustatscher, G.  and Ralser, M. ",
   Title="{{T}he proteomic landscape of genome-wide genetic perturbations}",
   Journal="Cell",
   Year="2023",
   Month="Apr"
}

% 36958336

Cryptosporidium uses multiple distinct secretory organelles to interact with and modify its host cell. rin , A.; Strelau, K. M.; Barylyuk, K.; Wallbank, B. A.; Berry, L.; Crook, O. M.; Lilley, K. S.; Waller, R. F.; and Striepen, B. Cell Host Microbe, 31(4): 650–664. Apr 2023.
link bibtex

@Article{pmid36958336,
   Author="rin, A.  and Strelau, K. M.  and Barylyuk, K.  and Wallbank, B. A.  and Berry, L.  and Crook, O. M.  and Lilley, K. S.  and Waller, R. F.  and Striepen, B. ",
   Title="{{C}ryptosporidium uses multiple distinct secretory organelles to interact with and modify its host cell}",
   Journal="Cell Host Microbe",
   Year="2023",
   Volume="31",
   Number="4",
   Pages="650--664",
   Month="Apr"
}

% 36845540

-transcribed RNA therapeutics. von der Haar, T.; Mulroney, T. E.; Hedayioglu, F.; Kurusamy, S.; Rust, M.; Lilley, K. S.; Thaventhiran, J. E.; Willis, A. E.; and Smales, C. M. Front Mol Biosci, 10: 1128067. 2023.
link bibtex

@Article{pmid36845540,
   Author="von der Haar, T.  and Mulroney, T. E.  and Hedayioglu, F.  and Kurusamy, S.  and Rust, M.  and Lilley, K. S.  and Thaventhiran, J. E.  and Willis, A. E.  and Smales, C. M. ",
   Title="{-transcribed {R}{N}{A} therapeutics}",
   Journal="Front Mol Biosci",
   Year="2023",
   Volume="10",
   Pages="1128067"
}

% 36507469

2022 (13)

Semi-Supervised Non-Parametric Bayesian Modelling of Spatial Proteomics. Crook, O. M.; Lilley, K. S.; Gatto, L.; and Kirk, P. D. W. Ann Appl Stat, 16(4). Dec 2022.
link bibtex

@Article{pmid36507469,
   Author="Crook, O. M.  and Lilley, K. S.  and Gatto, L.  and Kirk, P. D. W. ",
   Title="{{S}emi-{S}upervised {N}on-{P}arametric {B}ayesian {M}odelling of {S}patial {P}roteomics}",
   Journal="Ann Appl Stat",
   Year="2022",
   Volume="16",
   Number="4",
   Month="Dec"
}

% 36216816

Inferring differential subcellular localisation in comparative spatial proteomics using BANDLE. Crook, O. M.; Davies, C. T. R.; Breckels, L. M.; Christopher, J. A.; Gatto, L.; Kirk, P. D. W.; and Lilley, K. S. Nat Commun, 13(1): 5948. Oct 2022.
link bibtex

@Article{pmid36216816,
   Author="Crook, O. M.  and Davies, C. T. R.  and Breckels, L. M.  and Christopher, J. A.  and Gatto, L.  and Kirk, P. D. W.  and Lilley, K. S. ",
   Title="{{I}nferring differential subcellular localisation in comparative spatial proteomics using {B}{A}{N}{D}{L}{E}}",
   Journal="Nat Commun",
   Year="2022",
   Volume="13",
   Number="1",
   Pages="5948",
   Month="Oct"
}

% 36044572

Operation of a TCA cycle subnetwork in the mammalian nucleus. Kafkia, E.; Andres-Pons, A.; Ganter, K.; Seiler, M.; Smith, T. S.; Andrejeva, A.; Jouhten, P.; Pereira, F.; Franco, C.; Kuroshchenkova, A.; Leone, S.; Sawarkar, R.; Boston, R.; Thaventhiran, J.; Zaugg, J. B.; Lilley, K. S.; Lancrin, C.; Beck, M.; and Patil, K. R. Sci Adv, 8(35): eabq5206. Sep 2022.
link bibtex

@Article{pmid36044572,
   Author="Kafkia, E.  and Andres-Pons, A.  and Ganter, K.  and Seiler, M.  and Smith, T. S.  and Andrejeva, A.  and Jouhten, P.  and Pereira, F.  and Franco, C.  and Kuroshchenkova, A.  and Leone, S.  and Sawarkar, R.  and Boston, R.  and Thaventhiran, J.  and Zaugg, J. B.  and Lilley, K. S.  and Lancrin, C.  and Beck, M.  and Patil, K. R. ",
   Title="{{O}peration of a {T}{C}{A} cycle subnetwork in the mammalian nucleus}",
   Journal="Sci Adv",
   Year="2022",
   Volume="8",
   Number="35",
   Pages="eabq5206",
   Month="Sep"
}

% 35803928

dia-PASEF data analysis using FragPipe and DIA-NN for deep proteomics of low sample amounts. Demichev, V.; Szyrwiel, L.; Yu, F.; Teo, G. C.; Rosenberger, G.; Niewienda, A.; Ludwig, D.; Decker, J.; Kaspar-Schoenefeld, S.; Lilley, K. S.; lleder , M.; Nesvizhskii, A. I.; and Ralser, M. Nat Commun, 13(1): 3944. Jul 2022.
link bibtex

@Article{pmid35803928,
   Author="Demichev, V.  and Szyrwiel, L.  and Yu, F.  and Teo, G. C.  and Rosenberger, G.  and Niewienda, A.  and Ludwig, D.  and Decker, J.  and Kaspar-Schoenefeld, S.  and Lilley, K. S.  and lleder, M.  and Nesvizhskii, A. I.  and Ralser, M. ",
   Title="{dia-{P}{A}{S}{E}{F} data analysis using {F}rag{P}ipe and {D}{I}{A}-{N}{N} for deep proteomics of low sample amounts}",
   Journal="Nat Commun",
   Year="2022",
   Volume="13",
   Number="1",
   Pages="3944",
   Month="Jul"
}

% 35741067

CFTR Rescue by Lumacaftor (VX-809) Induces an Extensive Reorganization of Mitochondria in the Cystic Fibrosis Bronchial Epithelium. Braccia, C.; Christopher, J. A.; Crook, O. M.; Breckels, L. M.; Queiroz, R. M. L.; Liessi, N.; Tomati, V.; Capurro, V.; Bandiera, T.; Baldassari, S.; Pedemonte, N.; Lilley, K. S.; and Armirotti, A. Cells, 11(12). Jun 2022.
link bibtex

@Article{pmid35741067,
   Author="Braccia, C.  and Christopher, J. A.  and Crook, O. M.  and Breckels, L. M.  and Queiroz, R. M. L.  and Liessi, N.  and Tomati, V.  and Capurro, V.  and Bandiera, T.  and Baldassari, S.  and Pedemonte, N.  and Lilley, K. S.  and Armirotti, A. ",
   Title="{{C}{F}{T}{R} {R}escue by {L}umacaftor ({V}{X}-809) {I}nduces an {E}xtensive {R}eorganization of {M}itochondria in the {C}ystic {F}ibrosis {B}ronchial {E}pithelium}",
   Journal="Cells",
   Year="2022",
   Volume="11",
   Number="12",
   Month="Jun"
}

% 35726249

Prior Signal Acquisition Software Versions for Orbitrap Underestimate Low Isobaric Mass Tag Intensities, Without Detriment to Differential Abundance Experiments. Smith, T. S.; Andrejeva, A.; Christopher, J.; Crook, O. M.; Elzek, M.; and Lilley, K. S. ACS Meas Sci Au, 2(3): 233–240. Jun 2022.
link bibtex

@Article{pmid35726249,
   Author="Smith, T. S.  and Andrejeva, A.  and Christopher, J.  and Crook, O. M.  and Elzek, M.  and Lilley, K. S. ",
   Title="{{P}rior {S}ignal {A}cquisition {S}oftware {V}ersions for {O}rbitrap {U}nderestimate {L}ow {I}sobaric {M}ass {T}ag {I}ntensities, {W}ithout {D}etriment to {D}ifferential {A}bundance {E}xperiments}",
   Journal="ACS Meas Sci Au",
   Year="2022",
   Volume="2",
   Number="3",
   Pages="233--240",
   Month="Jun"
}

% 35721519

. Fabre, B.; Choteau, S. A.; é, C.; Pichereaux, C.; Montigny, A.; Korona, D.; Deery, M. J.; Camus, M.; Brun, C.; Burlet-Schiltz, O.; Russell, S.; Combier, J. P.; Lilley, K. S.; and Plaza, S. Front Cell Dev Biol, 10: 901351. 2022.
link bibtex

@Article{pmid35721519,
   Author="Fabre, B.  and Choteau, S. A.  and é, C.  and Pichereaux, C.  and Montigny, A.  and Korona, D.  and Deery, M. J.  and Camus, M.  and Brun, C.  and Burlet-Schiltz, O.  and Russell, S.  and Combier, J. P.  and Lilley, K. S.  and Plaza, S. ",
   Title="{}",
   Journal="Front Cell Dev Biol",
   Year="2022",
   Volume="10",
   Pages="901351"
}

% 35575460

nicotinic acetylcholine receptor subunits and their native interactions with insecticidal peptide toxins. Korona, D.; Dirnberger, B.; Giachello, C. N. G.; Queiroz, R. M. L.; Popovic, R.; ller , K. H.; Minde, D. P.; Deery, M. J.; Johnson, G.; Firth, L. C.; Earley, F. G.; Russell, S.; and Lilley, K. S. Elife, 11. May 2022.
link bibtex

@Article{pmid35575460,
   Author="Korona, D.  and Dirnberger, B.  and Giachello, C. N. G.  and Queiroz, R. M. L.  and Popovic, R.  and ller, K. H.  and Minde, D. P.  and Deery, M. J.  and Johnson, G.  and Firth, L. C.  and Earley, F. G.  and Russell, S.  and Lilley, K. S. ",
   Title="{nicotinic acetylcholine receptor subunits and their native interactions with insecticidal peptide toxins}",
   Journal="Elife",
   Year="2022",
   Volume="11",
   Month="May"
}

% 35534633

Understudied proteins: opportunities and challenges for functional proteomics. Kustatscher, G.; Collins, T.; Gingras, A. C.; Guo, T.; Hermjakob, H.; Ideker, T.; Lilley, K. S.; Lundberg, E.; Marcotte, E. M.; Ralser, M.; and Rappsilber, J. Nat Methods, 19(7): 774–779. Jul 2022.
link bibtex

@Article{pmid35534633,
   Author="Kustatscher, G.  and Collins, T.  and Gingras, A. C.  and Guo, T.  and Hermjakob, H.  and Ideker, T.  and Lilley, K. S.  and Lundberg, E.  and Marcotte, E. M.  and Ralser, M.  and Rappsilber, J. ",
   Title="{{U}nderstudied proteins: opportunities and challenges for functional proteomics}",
   Journal="Nat Methods",
   Year="2022",
   Volume="19",
   Number="7",
   Pages="774--779",
   Month="Jul"
}

% 35534555

An open invitation to the Understudied Proteins Initiative. Kustatscher, G.; Collins, T.; Gingras, A. C.; Guo, T.; Hermjakob, H.; Ideker, T.; Lilley, K. S.; Lundberg, E.; Marcotte, E. M.; Ralser, M.; and Rappsilber, J. Nat Biotechnol, 40(6): 815–817. Jun 2022.
link bibtex

@Article{pmid35534555,
   Author="Kustatscher, G.  and Collins, T.  and Gingras, A. C.  and Guo, T.  and Hermjakob, H.  and Ideker, T.  and Lilley, K. S.  and Lundberg, E.  and Marcotte, E. M.  and Ralser, M.  and Rappsilber, J. ",
   Title="{{A}n open invitation to the {U}nderstudied {P}roteins {I}nitiative}",
   Journal="Nat Biotechnol",
   Year="2022",
   Volume="40",
   Number="6",
   Pages="815--817",
   Month="Jun"
}

% 35180429

Unresolved stalled ribosome complexes restrict cell-cycle progression after genotoxic stress. Stoneley, M.; Harvey, R. F.; Mulroney, T. E.; Mordue, R.; Jukes-Jones, R.; Cain, K.; Lilley, K. S.; Sawarkar, R.; and Willis, A. E. Mol Cell, 82(8): 1557–1572. Apr 2022.
link bibtex

@Article{pmid35180429,
   Author="Stoneley, M.  and Harvey, R. F.  and Mulroney, T. E.  and Mordue, R.  and Jukes-Jones, R.  and Cain, K.  and Lilley, K. S.  and Sawarkar, R.  and Willis, A. E. ",
   Title="{{U}nresolved stalled ribosome complexes restrict cell-cycle progression after genotoxic stress}",
   Journal="Mol Cell",
   Year="2022",
   Volume="82",
   Number="8",
   Pages="1557--1572",
   Month="Apr"
}

% 35015072

Proteomic analysis in primary T cells reveals IL-7 alters T cell receptor thresholding via CYTIP/cytohesin/LFA-1 localisation and activation. Queiroz, R. M. L.; Piper, S. C.; Rees, J. S.; Strickson, S.; Briend, E.; Low, C. P.; Ferguson, G. J.; Lilley, K. S.; Jackson, A. P.; and Finch, D. K. Biochem J, 479(3): 225–243. Feb 2022.
link bibtex

@Article{pmid35015072,
   Author="Queiroz, R. M. L.  and Piper, S. C.  and Rees, J. S.  and Strickson, S.  and Briend, E.  and Low, C. P.  and Ferguson, G. J.  and Lilley, K. S.  and Jackson, A. P.  and Finch, D. K. ",
   Title="{{P}roteomic analysis in primary {T} cells reveals {I}{L}-7 alters {T} cell receptor thresholding via {C}{Y}{T}{I}{P}/cytohesin/{L}{F}{A}-1 localisation and activation}",
   Journal="Biochem J",
   Year="2022",
   Volume="479",
   Number="3",
   Pages="225--243",
   Month="Feb"
}

% 34922010

Subcellular Transcriptomics and Proteomics: A Comparative Methods Review. Christopher, J. A.; Geladaki, A.; Dawson, C. S.; Vennard, O. L.; and Lilley, K. S. Mol Cell Proteomics, 21(2): 100186. Feb 2022.
link bibtex

@Article{pmid34922010,
   Author="Christopher, J. A.  and Geladaki, A.  and Dawson, C. S.  and Vennard, O. L.  and Lilley, K. S. ",
   Title="{{S}ubcellular {T}ranscriptomics and {P}roteomics: {A} {C}omparative {M}ethods {R}eview}",
   Journal="Mol Cell Proteomics",
   Year="2022",
   Volume="21",
   Number="2",
   Pages="100186",
   Month="Feb"
}

% 34906326

2021 (7)

Localization of Organelle Proteins by Isotope Tagging: Current status and potential applications in drug discovery research. Elzek, M. A. W.; Christopher, J. A.; Breckels, L. M.; and Lilley, K. S. Drug Discov Today Technol, 39: 57–67. Dec 2021.
link bibtex

@Article{pmid34906326,
   Author="Elzek, M. A. W.  and Christopher, J. A.  and Breckels, L. M.  and Lilley, K. S. ",
   Title="{{L}ocalization of {O}rganelle {P}roteins by {I}sotope {T}agging: {C}urrent status and potential applications in drug discovery research}",
   Journal="Drug Discov Today Technol",
   Year="2021",
   Volume="39",
   Pages="57--67",
   Month="Dec"
}

% 34599159

Spatiotemporal proteomic profiling of the pro-inflammatory response to lipopolysaccharide in the THP-1 human leukaemia cell line. Mulvey, C. M.; Breckels, L. M.; Crook, O. M.; Sanders, D. J.; Ribeiro, A. L. R.; Geladaki, A.; Christoforou, A.; ek , N. K.; Hurrell, T.; Deery, M. J.; Gatto, L.; Smith, A. M.; and Lilley, K. S. Nat Commun, 12(1): 5773. Oct 2021.
link bibtex

@Article{pmid34599159,
   Author="Mulvey, C. M.  and Breckels, L. M.  and Crook, O. M.  and Sanders, D. J.  and Ribeiro, A. L. R.  and Geladaki, A.  and Christoforou, A.  and ek, N. K.  and Hurrell, T.  and Deery, M. J.  and Gatto, L.  and Smith, A. M.  and Lilley, K. S. ",
   Title="{{S}patiotemporal proteomic profiling of the pro-inflammatory response to lipopolysaccharide in the {T}{H}{P}-1 human leukaemia cell line}",
   Journal="Nat Commun",
   Year="2021",
   Volume="12",
   Number="1",
   Pages="5773",
   Month="Oct"
}

% 34549195

Subcellular proteomics. Christopher, J. A.; Stadler, C.; Martin, C. E.; Morgenstern, M.; Pan, Y.; Betsinger, C. N.; Rattray, D. G.; Mahdessian, D.; Gingras, A. C.; Warscheid, B.; ö, J.; Cristea, I. M.; Foster, L. J.; Emili, A.; and Lilley, K. S. Nat Rev Methods Primers, 1. 2021.
link bibtex

@Article{pmid34549195,
   Author="Christopher, J. A.  and Stadler, C.  and Martin, C. E.  and Morgenstern, M.  and Pan, Y.  and Betsinger, C. N.  and Rattray, D. G.  and Mahdessian, D.  and Gingras, A. C.  and Warscheid, B.  and ö, J.  and Cristea, I. M.  and Foster, L. J.  and Emili, A.  and Lilley, K. S. ",
   Title="{{S}ubcellular proteomics}",
   Journal="Nat Rev Methods Primers",
   Year="2021",
   Volume="1"
}

% 34188175

A Bayesian semi-parametric model for thermal proteome profiling. Fang, S.; Kirk, P. D. W.; Bantscheff, M.; Lilley, K. S.; and Crook, O. M. Commun Biol, 4(1): 810. Jun 2021.
link bibtex

@Article{pmid34188175,
   Author="Fang, S.  and Kirk, P. D. W.  and Bantscheff, M.  and Lilley, K. S.  and Crook, O. M. ",
   Title="{{A} {B}ayesian semi-parametric model for thermal proteome profiling}",
   Journal="Commun Biol",
   Year="2021",
   Volume="4",
   Number="1",
   Pages="810",
   Month="Jun"
}

% 34118193

Global analysis of protein-RNA interactions in SARS-CoV-2-infected cells reveals key regulators of infection. Kamel, W.; Noerenberg, M.; Cerikan, B.; Chen, H.; rvelin , A. I.; Kammoun, M.; Lee, J. Y.; Shuai, N.; Garcia-Moreno, M.; Andrejeva, A.; Deery, M. J.; Johnson, N.; Neufeldt, C. J.; Cortese, M.; Knight, M. L.; Lilley, K. S.; Martinez, J.; Davis, I.; Bartenschlager, R.; Mohammed, S.; and Castello, A. Mol Cell, 81(13): 2851–2867. Jul 2021.
link bibtex

@Article{pmid34118193,
   Author="Kamel, W.  and Noerenberg, M.  and Cerikan, B.  and Chen, H.  and rvelin, A. I.  and Kammoun, M.  and Lee, J. Y.  and Shuai, N.  and Garcia-Moreno, M.  and Andrejeva, A.  and Deery, M. J.  and Johnson, N.  and Neufeldt, C. J.  and Cortese, M.  and Knight, M. L.  and Lilley, K. S.  and Martinez, J.  and Davis, I.  and Bartenschlager, R.  and Mohammed, S.  and Castello, A. ",
   Title="{{G}lobal analysis of protein-{R}{N}{A} interactions in {S}{A}{R}{S}-{C}o{V}-2-infected cells reveals key regulators of infection}",
   Journal="Mol Cell",
   Year="2021",
   Volume="81",
   Number="13",
   Pages="2851--2867",
   Month="Jul"
}

% 33767396

Ultra-fast proteomics with Scanning SWATH. Messner, C. B.; Demichev, V.; Bloomfield, N.; Yu, J. S. L.; White, M.; Kreidl, M.; Egger, A. S.; Freiwald, A.; Ivosev, G.; Wasim, F.; Zelezniak, A.; rgens , L.; Suttorp, N.; Sander, L. E.; Kurth, F.; Lilley, K. S.; lleder , M.; Tate, S.; and Ralser, M. Nat Biotechnol, 39(7): 846–854. Jul 2021.
link bibtex

@Article{pmid33767396,
   Author="Messner, C. B.  and Demichev, V.  and Bloomfield, N.  and Yu, J. S. L.  and White, M.  and Kreidl, M.  and Egger, A. S.  and Freiwald, A.  and Ivosev, G.  and Wasim, F.  and Zelezniak, A.  and rgens, L.  and Suttorp, N.  and Sander, L. E.  and Kurth, F.  and Lilley, K. S.  and lleder, M.  and Tate, S.  and Ralser, M. ",
   Title="{{U}ltra-fast proteomics with {S}canning {S}{W}{A}{T}{H}}",
   Journal="Nat Biotechnol",
   Year="2021",
   Volume="39",
   Number="7",
   Pages="846--854",
   Month="Jul"
}

% 33495453

Pan-cancer analysis of transcripts encoding novel open-reading frames (nORFs) and their potential biological functions. Erady, C.; Boxall, A.; Puntambekar, S.; Suhas Jagannathan, N.; Chauhan, R.; Chong, D.; Meena, N.; Kulkarni, A.; Kasabe, B.; Prathivadi Bhayankaram, K.; Umrania, Y.; Andreani, A.; Nel, J.; Wayland, M. T.; Pina, C.; Lilley, K. S.; and Prabakaran, S. NPJ Genom Med, 6(1): 4. Jan 2021.
link bibtex

@Article{pmid33495453,
   Author="Erady, C.  and Boxall, A.  and Puntambekar, S.  and Suhas Jagannathan, N.  and Chauhan, R.  and Chong, D.  and Meena, N.  and Kulkarni, A.  and Kasabe, B.  and Prathivadi Bhayankaram, K.  and Umrania, Y.  and Andreani, A.  and Nel, J.  and Wayland, M. T.  and Pina, C.  and Lilley, K. S.  and Prabakaran, S. ",
   Title="{{P}an-cancer analysis of transcripts encoding novel open-reading frames (n{O}{R}{F}s) and their potential biological functions}",
   Journal="NPJ Genom Med",
   Year="2021",
   Volume="6",
   Number="1",
   Pages="4",
   Month="Jan"
}

% 33239640

2020 (14)

Spatial proteomics defines the content of trafficking vesicles captured by golgin tethers. Shin, J. J. H.; Crook, O. M.; Borgeaud, A. C.; á, J.; Peak-Chew, S. Y.; Breckels, L. M.; Gillingham, A. K.; Chadwick, J.; Lilley, K. S.; and Munro, S. Nat Commun, 11(1): 5987. Nov 2020.
link bibtex

@Article{pmid33239640,
   Author="Shin, J. J. H.  and Crook, O. M.  and Borgeaud, A. C.  and á, J.  and Peak-Chew, S. Y.  and Breckels, L. M.  and Gillingham, A. K.  and Chadwick, J.  and Lilley, K. S.  and Munro, S. ",
   Title="{{S}patial proteomics defines the content of trafficking vesicles captured by golgin tethers}",
   Journal="Nat Commun",
   Year="2020",
   Volume="11",
   Number="1",
   Pages="5987",
   Month="Nov"
}

% 33166281

A semi-supervised Bayesian approach for simultaneous protein sub-cellular localisation assignment and novelty detection. Crook, O. M.; Geladaki, A.; Nightingale, D. J. H.; Vennard, O. L.; Lilley, K. S.; Gatto, L.; and Kirk, P. D. W. PLoS Comput Biol, 16(11): e1008288. Nov 2020.
link bibtex

@Article{pmid33166281,
   Author="Crook, O. M.  and Geladaki, A.  and Nightingale, D. J. H.  and Vennard, O. L.  and Lilley, K. S.  and Gatto, L.  and Kirk, P. D. W. ",
   Title="{{A} semi-supervised {B}ayesian approach for simultaneous protein sub-cellular localisation assignment and novelty detection}",
   Journal="PLoS Comput Biol",
   Year="2020",
   Volume="16",
   Number="11",
   Pages="e1008288",
   Month="Nov"
}

% 33053376

A Comprehensive Subcellular Atlas of the Toxoplasma Proteome via hyperLOPIT Provides Spatial Context for Protein Functions. Barylyuk, K.; Koreny, L.; Ke, H.; Butterworth, S.; Crook, O. M.; Lassadi, I.; Gupta, V.; Tromer, E.; Mourier, T.; Stevens, T. J.; Breckels, L. M.; Pain, A.; Lilley, K. S.; and Waller, R. F. Cell Host Microbe, 28(5): 752–766. Nov 2020.
link bibtex

@Article{pmid33053376,
   Author="Barylyuk, K.  and Koreny, L.  and Ke, H.  and Butterworth, S.  and Crook, O. M.  and Lassadi, I.  and Gupta, V.  and Tromer, E.  and Mourier, T.  and Stevens, T. J.  and Breckels, L. M.  and Pain, A.  and Lilley, K. S.  and Waller, R. F. ",
   Title="{{A} {C}omprehensive {S}ubcellular {A}tlas of the {T}oxoplasma {P}roteome via hyper{L}{O}{P}{I}{T} {P}rovides {S}patial {C}ontext for {P}rotein {F}unctions}",
   Journal="Cell Host Microbe",
   Year="2020",
   Volume="28",
   Number="5",
   Pages="752--766",
   Month="Nov"
}

% 32941543

Correction: Proteomics of intracellular freezing survival. Thorne, M. A. S.; ek , N. K.; Hawkins, L.; Lilley, K. S.; and Storey, K. B. PLoS One, 15(9): e0239641. 2020.
link bibtex

@Article{pmid32941543,
   Author="Thorne, M. A. S.  and ek, N. K.  and Hawkins, L.  and Lilley, K. S.  and Storey, K. B. ",
   Title="{{C}orrection: {P}roteomics of intracellular freezing survival}",
   Journal="PLoS One",
   Year="2020",
   Volume="15",
   Number="9",
   Pages="e0239641"
}

% 32651564

Efficient recovery of the RNA-bound proteome and protein-bound transcriptome using phase separation (OOPS). Villanueva, E.; Smith, T.; Queiroz, R. M. L.; Monti, M.; Pizzinga, M.; Elzek, M.; Dezi, V.; Harvey, R. F.; Ramakrishna, M.; Willis, A. E.; and Lilley, K. S. Nat Protoc, 15(8): 2568–2588. Aug 2020.
link bibtex

@Article{pmid32651564,
   Author="Villanueva, E.  and Smith, T.  and Queiroz, R. M. L.  and Monti, M.  and Pizzinga, M.  and Elzek, M.  and Dezi, V.  and Harvey, R. F.  and Ramakrishna, M.  and Willis, A. E.  and Lilley, K. S. ",
   Title="{{E}fficient recovery of the {R}{N}{A}-bound proteome and protein-bound transcriptome using phase separation ({O}{O}{P}{S})}",
   Journal="Nat Protoc",
   Year="2020",
   Volume="15",
   Number="8",
   Pages="2568--2588",
   Month="Aug"
}

% 32619549

Ultra-High-Throughput Clinical Proteomics Reveals Classifiers of COVID-19 Infection. Messner, C. B.; Demichev, V.; Wendisch, D.; Michalick, L.; White, M.; Freiwald, A.; Textoris-Taube, K.; Vernardis, S. I.; Egger, A. S.; Kreidl, M.; Ludwig, D.; Kilian, C.; Agostini, F.; Zelezniak, A.; Thibeault, C.; Pfeiffer, M.; Hippenstiel, S.; Hocke, A.; von Kalle, C.; Campbell, A.; Hayward, C.; Porteous, D. J.; Marioni, R. E.; Langenberg, C.; Lilley, K. S.; Kuebler, W. M.; lleder , M.; Drosten, C.; Suttorp, N.; Witzenrath, M.; Kurth, F.; Sander, L. E.; and Ralser, M. Cell Syst, 11(1): 11–24. Jul 2020.
link bibtex

@Article{pmid32619549,
   Author="Messner, C. B.  and Demichev, V.  and Wendisch, D.  and Michalick, L.  and White, M.  and Freiwald, A.  and Textoris-Taube, K.  and Vernardis, S. I.  and Egger, A. S.  and Kreidl, M.  and Ludwig, D.  and Kilian, C.  and Agostini, F.  and Zelezniak, A.  and Thibeault, C.  and Pfeiffer, M.  and Hippenstiel, S.  and Hocke, A.  and von Kalle, C.  and Campbell, A.  and Hayward, C.  and Porteous, D. J.  and Marioni, R. E.  and Langenberg, C.  and Lilley, K. S.  and Kuebler, W. M.  and lleder, M.  and Drosten, C.  and Suttorp, N.  and Witzenrath, M.  and Kurth, F.  and Sander, L. E.  and Ralser, M. ",
   Title="{{U}ltra-{H}igh-{T}hroughput {C}linical {P}roteomics {R}eveals {C}lassifiers of {C}{O}{V}{I}{D}-19 {I}nfection}",
   Journal="Cell Syst",
   Year="2020",
   Volume="11",
   Number="1",
   Pages="11--24",
   Month="Jul"
}

% 32558233

Moving Profiling Spatial Proteomics Beyond Discrete Classification. Crook, O. M.; Smith, T.; Elzek, M.; and Lilley, K. S. Proteomics, 20(23): e1900392. Dec 2020.
link bibtex

@Article{pmid32558233,
   Author="Crook, O. M.  and Smith, T.  and Elzek, M.  and Lilley, K. S. ",
   Title="{{M}oving {P}rofiling {S}patial {P}roteomics {B}eyond {D}iscrete {C}lassification}",
   Journal="Proteomics",
   Year="2020",
   Volume="20",
   Number="23",
   Pages="e1900392",
   Month="Dec"
}

% 32453791

Proteomics of intracellular freezing survival. Thorne, M. A. S.; ek , N. K.; Hawkins, L.; Lilley, K. S.; and Storey, K. B. PLoS One, 15(5): e0233048. 2020.
link bibtex

@Article{pmid32453791,
   Author="Thorne, M. A. S.  and ek, N. K.  and Hawkins, L.  and Lilley, K. S.  and Storey, K. B. ",
   Title="{{P}roteomics of intracellular freezing survival}",
   Journal="PLoS One",
   Year="2020",
   Volume="15",
   Number="5",
   Pages="e0233048"
}

% 32434922

Changes in the Oligodendrocyte Progenitor Cell Proteome with Ageing. de la Fuente, A. G.; Queiroz, R. M. L.; Ghosh, T.; McMurran, C. E.; Cubillos, J. F.; Bergles, D. E.; Fitzgerald, D. C.; Jones, C. A.; Lilley, K. S.; Glover, C. P.; and Franklin, R. J. M. Mol Cell Proteomics, 19(8): 1281–1302. Aug 2020.
link bibtex

@Article{pmid32434922,
   Author="de la Fuente, A. G.  and Queiroz, R. M. L.  and Ghosh, T.  and McMurran, C. E.  and Cubillos, J. F.  and Bergles, D. E.  and Fitzgerald, D. C.  and Jones, C. A.  and Lilley, K. S.  and Glover, C. P.  and Franklin, R. J. M. ",
   Title="{{C}hanges in the {O}ligodendrocyte {P}rogenitor {C}ell {P}roteome with {A}geing}",
   Journal="Mol Cell Proteomics",
   Year="2020",
   Volume="19",
   Number="8",
   Pages="1281--1302",
   Month="Aug"
}

% 32328641

A direct role for SNX9 in the biogenesis of filopodia. Jarsch, I. K.; Gadsby, J. R.; Nuccitelli, A.; Mason, J.; Shimo, H.; Pilloux, L.; Marzook, B.; Mulvey, C. M.; Dobramysl, U.; Bradshaw, C. R.; Lilley, K. S.; Hayward, R. D.; Vaughan, T. J.; Dobson, C. L.; and Gallop, J. L. J Cell Biol, 219(4). Apr 2020.
link bibtex

@Article{pmid32328641,
   Author="Jarsch, I. K.  and Gadsby, J. R.  and Nuccitelli, A.  and Mason, J.  and Shimo, H.  and Pilloux, L.  and Marzook, B.  and Mulvey, C. M.  and Dobramysl, U.  and Bradshaw, C. R.  and Lilley, K. S.  and Hayward, R. D.  and Vaughan, T. J.  and Dobson, C. L.  and Gallop, J. L. ",
   Title="{{A} direct role for {S}{N}{X}9 in the biogenesis of filopodia}",
   Journal="J Cell Biol",
   Year="2020",
   Volume="219",
   Number="4",
   Month="Apr"
}

% 32319587

3 by proteomic proximity labelling. Rees, J. S.; Cheung, L. C. C.; Hamaia, S. W.; Davies, G.; Sandercock, A.; Lilley, K. S.; Tigue, N.; and Jackson, A. P. Int J Oncol, 57(1): 87–99. Jul 2020.
link bibtex

@Article{pmid32319587,
   Author="Rees, J. S.  and Cheung, L. C. C.  and Hamaia, S. W.  and Davies, G.  and Sandercock, A.  and Lilley, K. S.  and Tigue, N.  and Jackson, A. P. ",
   Title="{3 by proteomic proximity labelling}",
   Journal="Int J Oncol",
   Year="2020",
   Volume="57",
   Number="1",
   Pages="87--99",
   Month="Jul"
}

% 32131038

Organic phase separation opens up new opportunities to interrogate the RNA-binding proteome. Smith, T.; Villanueva, E.; Queiroz, R. M. L.; Dawson, C. S.; Elzek, M.; Urdaneta, E. C.; Willis, A. E.; Beckmann, B. M.; Krijgsveld, J.; and Lilley, K. S. Curr Opin Chem Biol, 54: 70–75. Feb 2020.
link bibtex

@Article{pmid32131038,
   Author="Smith, T.  and Villanueva, E.  and Queiroz, R. M. L.  and Dawson, C. S.  and Elzek, M.  and Urdaneta, E. C.  and Willis, A. E.  and Beckmann, B. M.  and Krijgsveld, J.  and Lilley, K. S. ",
   Title="{{O}rganic phase separation opens up new opportunities to interrogate the {R}{N}{A}-binding proteome}",
   Journal="Curr Opin Chem Biol",
   Year="2020",
   Volume="54",
   Pages="70--75",
   Month="Feb"
}

% 32039234

Biotin proximity tagging favours unfolded proteins and enables the study of intrinsically disordered regions. Minde, D. P.; Ramakrishna, M.; and Lilley, K. S. Commun Biol, 3(1): 38. Jan 2020.
link bibtex

@Article{pmid31969649,
   Author="Minde, D. P.  and Ramakrishna, M.  and Lilley, K. S. ",
   Title="{{B}iotin proximity tagging favours unfolded proteins and enables the study of intrinsically disordered regions}",
   Journal="Commun Biol",
   Year="2020",
   Volume="3",
   Number="1",
   Pages="38",
   Month="Jan"
}

% 31891113

DIA-NN: neural networks and interference correction enable deep proteome coverage in high throughput. Demichev, V.; Messner, C. B.; Vernardis, S. I.; Lilley, K. S.; and Ralser, M. Nat Methods, 17(1): 41–44. Jan 2020.
link bibtex

@Article{pmid31768060,
   Author="Demichev, V.  and Messner, C. B.  and Vernardis, S. I.  and Lilley, K. S.  and Ralser, M. ",
   Title="{{D}{I}{A}-{N}{N}: neural networks and interference correction enable deep proteome coverage in high throughput}",
   Journal="Nat Methods",
   Year="2020",
   Volume="17",
   Number="1",
   Pages="41--44",
   Month="Jan"
}

% 31602611

2019 (20)

Drought Stress Causes Specific Changes to the Spliceosome and Stress Granule Components. Marondedze, C.; Thomas, L.; Lilley, K. S.; and Gehring, C. Front Mol Biosci, 6: 163. 2019.
link bibtex

@Article{pmid32039234,
   Author="Marondedze, C.  and Thomas, L.  and Lilley, K. S.  and Gehring, C. ",
   Title="{{D}rought {S}tress {C}auses {S}pecific {C}hanges to the {S}pliceosome and {S}tress {G}ranule {C}omponents}",
   Journal="Front Mol Biosci",
   Year="2019",
   Volume="6",
   Pages="163"
}

% 31969649

N-recognin E3 ligase PROTEOLYSIS1 influences the immune response. Till, C. J.; Vicente, J.; Zhang, H.; Oszvald, M.; Deery, M. J.; Pastor, V.; Lilley, K. S.; Ray, R. V.; Theodoulou, F. L.; and Holdsworth, M. J. Plant Direct, 3(12): e00194. Dec 2019.
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@Article{pmid31891113,
   Author="Till, C. J.  and Vicente, J.  and Zhang, H.  and Oszvald, M.  and Deery, M. J.  and Pastor, V.  and Lilley, K. S.  and Ray, R. V.  and Theodoulou, F. L.  and Holdsworth, M. J. ",
   Title="{{N}-recognin {E}3 ligase {P}{R}{O}{T}{E}{O}{L}{Y}{S}{I}{S}1 influences the immune response}",
   Journal="Plant Direct",
   Year="2019",
   Volume="3",
   Number="12",
   Pages="e00194",
   Month="Dec"
}

% 31768060

Mapping the Saccharomyces cerevisiae Spatial Proteome with High Resolution Using hyperLOPIT. Nightingale, D. J. H.; Oliver, S. G.; and Lilley, K. S. Methods Mol Biol, 2049: 165–190. 2019.
link bibtex

@Article{pmid31602611,
   Author="Nightingale, D. J. H.  and Oliver, S. G.  and Lilley, K. S. ",
   Title="{{M}apping the {S}accharomyces cerevisiae {S}patial {P}roteome with {H}igh {R}esolution {U}sing hyper{L}{O}{P}{I}{T}}",
   Journal="Methods Mol Biol",
   Year="2019",
   Volume="2049",
   Pages="165--190"
}

% 31578229

Proteome Mapping of a Cyanobacterium Reveals Distinct Compartment Organization and Cell-Dispersed Metabolism. Baers, L. L.; Breckels, L. M.; Mills, L. A.; Gatto, L.; Deery, M. J.; Stevens, T. J.; Howe, C. J.; Lilley, K. S.; and Lea-Smith, D. J. Plant Physiol, 181(4): 1721–1738. Dec 2019.
link bibtex

@Article{pmid31578229,
   Author="Baers, L. L.  and Breckels, L. M.  and Mills, L. A.  and Gatto, L.  and Deery, M. J.  and Stevens, T. J.  and Howe, C. J.  and Lilley, K. S.  and Lea-Smith, D. J. ",
   Title="{{P}roteome {M}apping of a {C}yanobacterium {R}eveals {D}istinct {C}ompartment {O}rganization and {C}ell-{D}ispersed {M}etabolism}",
   Journal="Plant Physiol",
   Year="2019",
   Volume="181",
   Number="4",
   Pages="1721--1738",
   Month="Dec"
}

% 33654815

. Nightingale, D. J. H.; Lilley, K. S.; and Oliver, S. G. Bio Protoc, 9(14): e3303. Jul 2019.
link bibtex

@Article{pmid33654815,
   Author="Nightingale, D. J. H.  and Lilley, K. S.  and Oliver, S. G. ",
   Title="{}",
   Journal="Bio Protoc",
   Year="2019",
   Volume="9",
   Number="14",
   Pages="e3303",
   Month="Jul"
}

% 31266899

Reveals Underlying Properties of Cisternal Localization. Parsons, H. T.; Stevens, T. J.; McFarlane, H. E.; Vidal-Melgosa, S.; Griss, J.; Lawrence, N.; Butler, R.; Sousa, M. M. L.; Salemi, M.; Willats, W. G. T.; Petzold, C. J.; Heazlewood, J. L.; and Lilley, K. S. Plant Cell, 31(9): 2010–2034. Sep 2019.
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@Article{pmid31266899,
   Author="Parsons, H. T.  and Stevens, T. J.  and McFarlane, H. E.  and Vidal-Melgosa, S.  and Griss, J.  and Lawrence, N.  and Butler, R.  and Sousa, M. M. L.  and Salemi, M.  and Willats, W. G. T.  and Petzold, C. J.  and Heazlewood, J. L.  and Lilley, K. S. ",
   Title="{{R}eveals {U}nderlying {P}roperties of {C}isternal {L}ocalization}",
   Journal="Plant Cell",
   Year="2019",
   Volume="31",
   Number="9",
   Pages="2010--2034",
   Month="Sep"
}

% 31123356

Author Correction: Comprehensive identification of RNA-protein interactions in any organism using orthogonal organic phase separation (OOPS). Queiroz, R. M. L.; Smith, T.; Villanueva, E.; Marti-Solano, M.; Monti, M.; Pizzinga, M.; Mirea, D. M.; Ramakrishna, M.; Harvey, R. F.; Dezi, V.; Thomas, G. H.; Willis, A. E.; and Lilley, K. S. Nat Biotechnol, 37(6): 692. Jun 2019.
link bibtex

@Article{pmid31123356,
   Author="Queiroz, R. M. L.  and Smith, T.  and Villanueva, E.  and Marti-Solano, M.  and Monti, M.  and Pizzinga, M.  and Mirea, D. M.  and Ramakrishna, M.  and Harvey, R. F.  and Dezi, V.  and Thomas, G. H.  and Willis, A. E.  and Lilley, K. S. ",
   Title="{{A}uthor {C}orrection: {C}omprehensive identification of {R}{N}{A}-protein interactions in any organism using orthogonal organic phase separation ({O}{O}{P}{S})}",
   Journal="Nat Biotechnol",
   Year="2019",
   Volume="37",
   Number="6",
   Pages="692",
   Month="Jun"
}

% 31119032

A Bioconductor workflow for the Bayesian analysis of spatial proteomics. Crook, O. M.; Breckels, L. M.; Lilley, K. S.; Kirk, P. D. W.; and Gatto, L. F1000Res, 8: 446. 2019.
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@Article{pmid31119032,
   Author="Crook, O. M.  and Breckels, L. M.  and Lilley, K. S.  and Kirk, P. D. W.  and Gatto, L. ",
   Title="{{A} {B}ioconductor workflow for the {B}ayesian analysis of spatial proteomics}",
   Journal="F1000Res",
   Year="2019",
   Volume="8",
   Pages="446"
}

% 31083952

Comparison of Drosophila melanogaster Embryo and Adult Proteome by SWATH-MS Reveals Differential Regulation of Protein Synthesis, Degradation Machinery, and Metabolism Modules. Fabre, B.; Korona, D.; Lees, J. G.; Lazar, I.; Livneh, I.; Brunet, M.; Orengo, C. A.; Russell, S.; and Lilley, K. S. J Proteome Res, 18(6): 2525–2534. Jun 2019.
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@Article{pmid31083952,
   Author="Fabre, B.  and Korona, D.  and Lees, J. G.  and Lazar, I.  and Livneh, I.  and Brunet, M.  and Orengo, C. A.  and Russell, S.  and Lilley, K. S. ",
   Title="{{C}omparison of {D}rosophila melanogaster {E}mbryo and {A}dult {P}roteome by {S}{W}{A}{T}{H}-{M}{S} {R}eveals {D}ifferential {R}egulation of {P}rotein {S}ynthesis, {D}egradation {M}achinery, and {M}etabolism {M}odules}",
   Journal="J Proteome Res",
   Year="2019",
   Volume="18",
   Number="6",
   Pages="2525--2534",
   Month="Jun"
}

% 31019917

Ketamine's Effects on the Glutamatergic and GABAergic Systems: A Proteomics and Metabolomics Study in Mice. Weckmann, K.; Deery, M. J.; Howard, J. A.; Feret, R.; Asara, J. M.; Dethloff, F.; Filiou, M. D.; Labermaier, C.; Maccarrone, G.; Lilley, K. S.; Mueller, M.; and Turck, C. W. Mol Neuropsychiatry, 5(1): 42–51. Mar 2019.
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@Article{pmid31019917,
   Author="Weckmann, K.  and Deery, M. J.  and Howard, J. A.  and Feret, R.  and Asara, J. M.  and Dethloff, F.  and Filiou, M. D.  and Labermaier, C.  and Maccarrone, G.  and Lilley, K. S.  and Mueller, M.  and Turck, C. W. ",
   Title="{{K}etamine's {E}ffects on the {G}lutamatergic and {G}{A}{B}{A}ergic {S}ystems: {A} {P}roteomics and {M}etabolomics {S}tudy in {M}ice}",
   Journal="Mol Neuropsychiatry",
   Year="2019",
   Volume="5",
   Number="1",
   Pages="42--51",
   Month="Mar"
}

% 30975080

Changes in the Arabidopsis RNA-binding proteome reveal novel stress response mechanisms. Marondedze, C.; Thomas, L.; Gehring, C.; and Lilley, K. S. BMC Plant Biol, 19(1): 139. Apr 2019.
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@Article{pmid30975080,
   Author="Marondedze, C.  and Thomas, L.  and Gehring, C.  and Lilley, K. S. ",
   Title="{{C}hanges in the {A}rabidopsis {R}{N}{A}-binding proteome reveal novel stress response mechanisms}",
   Journal="BMC Plant Biol",
   Year="2019",
   Volume="19",
   Number="1",
   Pages="139",
   Month="Apr"
}

% 30824743

A proteomic time course through the differentiation of human induced pluripotent stem cells into hepatocyte-like cells. Hurrell, T.; Segeritz, C. P.; Vallier, L.; Lilley, K. S.; and Cromarty, A. D. Sci Rep, 9(1): 3270. Mar 2019.
link bibtex

@Article{pmid30824743,
   Author="Hurrell, T.  and Segeritz, C. P.  and Vallier, L.  and Lilley, K. S.  and Cromarty, A. D. ",
   Title="{{A} proteomic time course through the differentiation of human induced pluripotent stem cells into hepatocyte-like cells}",
   Journal="Sci Rep",
   Year="2019",
   Volume="9",
   Number="1",
   Pages="3270",
   Month="Mar"
}

% 30782346

Editorial overview: Untangling proteome organization in space and time. Cristea, I. M.; and Lilley, K. S. Curr Opin Chem Biol, 48: A1-A4. Feb 2019.
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@Article{pmid30782346,
   Author="Cristea, I. M.  and Lilley, K. S. ",
   Title="{{E}ditorial overview: {U}ntangling proteome organization in space and time}",
   Journal="Curr Opin Chem Biol",
   Year="2019",
   Volume="48",
   Pages="A1-A4",
   Month="Feb"
}

% 30753445

Transcriptional regulation of the genes involved in protein metabolism and processing in Saccharomyces cerevisiae. Dikicioglu, D.; Nightingale, D. J. H.; Wood, V.; Lilley, K. S.; and Oliver, S. G. FEMS Yeast Res, 19(2). Mar 2019.
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@Article{pmid30753445,
   Author="Dikicioglu, D.  and Nightingale, D. J. H.  and Wood, V.  and Lilley, K. S.  and Oliver, S. G. ",
   Title="{{T}ranscriptional regulation of the genes involved in protein metabolism and processing in {S}accharomyces cerevisiae}",
   Journal="FEMS Yeast Res",
   Year="2019",
   Volume="19",
   Number="2",
   Month="Mar"
}

% 30711721

Assessing sub-cellular resolution in spatial proteomics experiments. Gatto, L.; Breckels, L. M.; and Lilley, K. S. Curr Opin Chem Biol, 48: 123–149. Feb 2019.
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@Article{pmid30711721,
   Author="Gatto, L.  and Breckels, L. M.  and Lilley, K. S. ",
   Title="{{A}ssessing sub-cellular resolution in spatial proteomics experiments}",
   Journal="Curr Opin Chem Biol",
   Year="2019",
   Volume="48",
   Pages="123--149",
   Month="Feb"
}

% 30659192

Combining LOPIT with differential ultracentrifugation for high-resolution spatial proteomics. Geladaki, A.; ek , N.; Breckels, L. M.; Smith, T. S.; Vennard, O. L.; Mulvey, C. M.; Crook, O. M.; Gatto, L.; and Lilley, K. S. Nat Commun, 10(1): 331. Jan 2019.
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@Article{pmid30659192,
   Author="Geladaki, A.  and ek, N.  and Breckels, L. M.  and Smith, T. S.  and Vennard, O. L.  and Mulvey, C. M.  and Crook, O. M.  and Gatto, L.  and Lilley, K. S. ",
   Title="{{C}ombining {L}{O}{P}{I}{T} with differential ultracentrifugation for high-resolution spatial proteomics}",
   Journal="Nat Commun",
   Year="2019",
   Volume="10",
   Number="1",
   Pages="331",
   Month="Jan"
}

% 30607034

Comprehensive identification of RNA-protein interactions in any organism using orthogonal organic phase separation (OOPS). Queiroz, R. M. L.; Smith, T.; Villanueva, E.; Marti-Solano, M.; Monti, M.; Pizzinga, M.; Mirea, D. M.; Ramakrishna, M.; Harvey, R. F.; Dezi, V.; Thomas, G. H.; Willis, A. E.; and Lilley, K. S. Nat Biotechnol, 37(2): 169–178. Feb 2019.
link bibtex

@Article{pmid30607034,
   Author="Queiroz, R. M. L.  and Smith, T.  and Villanueva, E.  and Marti-Solano, M.  and Monti, M.  and Pizzinga, M.  and Mirea, D. M.  and Ramakrishna, M.  and Harvey, R. F.  and Dezi, V.  and Thomas, G. H.  and Willis, A. E.  and Lilley, K. S. ",
   Title="{{C}omprehensive identification of {R}{N}{A}-protein interactions in any organism using orthogonal organic phase separation ({O}{O}{P}{S})}",
   Journal="Nat Biotechnol",
   Year="2019",
   Volume="37",
   Number="2",
   Pages="169--178",
   Month="Feb"
}

% 30503867

The subcellular organisation of Saccharomyces cerevisiae. Nightingale, D. J.; Geladaki, A.; Breckels, L. M.; Oliver, S. G.; and Lilley, K. S. Curr Opin Chem Biol, 48: 86–95. Feb 2019.
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@Article{pmid30503867,
   Author="Nightingale, D. J.  and Geladaki, A.  and Breckels, L. M.  and Oliver, S. G.  and Lilley, K. S. ",
   Title="{{T}he subcellular organisation of {S}accharomyces cerevisiae}",
   Journal="Curr Opin Chem Biol",
   Year="2019",
   Volume="48",
   Pages="86--95",
   Month="Feb"
}

% 30481170

Proteomic responses of HepG2 cell monolayers and 3D spheroids to selected hepatotoxins. Hurrell, T.; Lilley, K. S.; and Cromarty, A. D. Toxicol Lett, 300: 40–50. Jan 2019.
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@Article{pmid30381255,
   Author="Hurrell, T.  and Lilley, K. S.  and Cromarty, A. D. ",
   Title="{{P}roteomic responses of {H}ep{G}2 cell monolayers and 3{D} spheroids to selected hepatotoxins}",
   Journal="Toxicol Lett",
   Year="2019",
   Volume="300",
   Pages="40--50",
   Month="Jan"
}

% 30279377

The Parkinson's Disease-Linked Protein DJ-1 Associates with Cytoplasmic mRNP Granules During Stress and Neurodegeneration. Repici, M.; Hassanjani, M.; Maddison, D. C.; o , P.; Cimini, S.; Patel, B.; ö, M.; Straatman, K. R.; Lilley, K. S.; Borsello, T.; Outeiro, T. F.; Panman, L.; and Giorgini, F. Mol Neurobiol, 56(1): 61–77. Jan 2019.
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@Article{pmid29675578,
   Author="Repici, M.  and Hassanjani, M.  and Maddison, D. C.  and o, P.  and Cimini, S.  and Patel, B.  and ö, M.  and Straatman, K. R.  and Lilley, K. S.  and Borsello, T.  and Outeiro, T. F.  and Panman, L.  and Giorgini, F. ",
   Title="{{T}he {P}arkinson's {D}isease-{L}inked {P}rotein {D}{J}-1 {A}ssociates with {C}ytoplasmic m{R}{N}{P} {G}ranules {D}uring {S}tress and {N}eurodegeneration}",
   Journal="Mol Neurobiol",
   Year="2019",
   Volume="56",
   Number="1",
   Pages="61--77",
   Month="Jan"
}

% 29635369

2018 (12)

A Bayesian mixture modelling approach for spatial proteomics. Crook, O. M.; Mulvey, C. M.; Kirk, P. D. W.; Lilley, K. S.; and Gatto, L. PLoS Comput Biol, 14(11): e1006516. Nov 2018.
link bibtex

@Article{pmid30481170,
   Author="Crook, O. M.  and Mulvey, C. M.  and Kirk, P. D. W.  and Lilley, K. S.  and Gatto, L. ",
   Title="{{A} {B}ayesian mixture modelling approach for spatial proteomics}",
   Journal="PLoS Comput Biol",
   Year="2018",
   Volume="14",
   Number="11",
   Pages="e1006516",
   Month="Nov"
}

% 30467512

Ethylene Receptors, CTRs and EIN2 Target Protein Identification and Quantification Through Parallel Reaction Monitoring During Tomato Fruit Ripening. Mata, C. I.; Fabre, B.; Parsons, H. T.; Hertog, M. L. A. T. M.; Van Raemdonck, G.; Baggerman, G.; Van de Poel, B.; Lilley, K. S.; and ï, B. M. Front Plant Sci, 9: 1626. 2018.
link bibtex

@Article{pmid30467512,
   Author="Mata, C. I.  and Fabre, B.  and Parsons, H. T.  and Hertog, M. L. A. T. M.  and Van Raemdonck, G.  and Baggerman, G.  and Van de Poel, B.  and Lilley, K. S.  and ï, B. M. ",
   Title="{{E}thylene {R}eceptors, {C}{T}{R}s and {E}{I}{N}2 {T}arget {P}rotein {I}dentification and {Q}uantification {T}hrough {P}arallel {R}eaction {M}onitoring {D}uring {T}omato {F}ruit {R}ipening}",
   Journal="Front Plant Sci",
   Year="2018",
   Volume="9",
   Pages="1626"
}

% 30381255

Cell Suspension Culture Proteome. Alqurashi, M.; Chiapello, M.; Bianchet, C.; Paolocci, F.; Lilley, K. S.; and Gehring, C. Proteomes, 6(4). Oct 2018.
link bibtex

@Article{pmid30279377,
   Author="Alqurashi, M.  and Chiapello, M.  and Bianchet, C.  and Paolocci, F.  and Lilley, K. S.  and Gehring, C. ",
   Title="{{C}ell {S}uspension {C}ulture {P}roteome}",
   Journal="Proteomes",
   Year="2018",
   Volume="6",
   Number="4",
   Month="Oct"
}

% 30169671

Identification of the RNA polymerase I-RNA interactome. eiro , D.; Stoneley, M.; Ramakrishna, M.; Alexandrova, J.; Dezi, V.; Juke-Jones, R.; Lilley, K. S.; Cain, K.; and Willis, A. E. Nucleic Acids Res, 46(20): 11002–11013. Nov 2018.
link bibtex

@Article{pmid30169671,
   Author="eiro, D.  and Stoneley, M.  and Ramakrishna, M.  and Alexandrova, J.  and Dezi, V.  and Juke-Jones, R.  and Lilley, K. S.  and Cain, K.  and Willis, A. E. ",
   Title="{{I}dentification of the {R}{N}{A} polymerase {I}-{R}{N}{A} interactome}",
   Journal="Nucleic Acids Res",
   Year="2018",
   Volume="46",
   Number="20",
   Pages="11002--11013",
   Month="Nov"
}

% 29895711

ve pluripotency. Nett, I. R.; Mulas, C.; Gatto, L.; Lilley, K. S.; and Smith, A. EMBO Rep, 19(8). Aug 2018.
link bibtex

@Article{pmid29895711,
   Author="Nett, I. R.  and Mulas, C.  and Gatto, L.  and Lilley, K. S.  and Smith, A. ",
   Title="{ve pluripotency}",
   Journal="EMBO Rep",
   Year="2018",
   Volume="19",
   Number="8",
   Month="Aug"
}

% 29846552

Ciprofloxacin binding to GyrA causes global changes in the proteome of Pseudomonas aeruginosa. Jedrey, H.; Lilley, K. S.; and Welch, M. FEMS Microbiol Lett, 365(13). Jul 2018.
link bibtex

@Article{pmid29846552,
   Author="Jedrey, H.  and Lilley, K. S.  and Welch, M. ",
   Title="{{C}iprofloxacin binding to {G}yr{A} causes global changes in the proteome of {P}seudomonas aeruginosa}",
   Journal="FEMS Microbiol Lett",
   Year="2018",
   Volume="365",
   Number="13",
   Month="Jul"
}

% 29675578

Proteomic Comparison of Various Hepatic Cell Cultures for Preclinical Safety Pharmacology. Hurrell, T.; Segeritz, C. P.; Vallier, L.; Lilley, K. S.; and Cromarty, A. D. Toxicol Sci, 164(1): 229–239. Jul 2018.
link bibtex

@Article{pmid29635369,
   Author="Hurrell, T.  and Segeritz, C. P.  and Vallier, L.  and Lilley, K. S.  and Cromarty, A. D. ",
   Title="{{P}roteomic {C}omparison of {V}arious {H}epatic {C}ell {C}ultures for {P}reclinical {S}afety {P}harmacology}",
   Journal="Toxicol Sci",
   Year="2018",
   Volume="164",
   Number="1",
   Pages="229--239",
   Month="Jul"
}

% 29390084

Co-complex protein membership evaluation using Maximum Entropy on GO ontology and InterPro annotation. Armean, I. M.; Lilley, K. S.; Trotter, M. W. B.; Pilkington, N. C. V.; and Holden, S. B. Bioinformatics, 34(11): 1884–1892. Jun 2018.
link bibtex

@Article{pmid29390084,
   Author="Armean, I. M.  and Lilley, K. S.  and Trotter, M. W. B.  and Pilkington, N. C. V.  and Holden, S. B. ",
   Title="{{C}o-complex protein membership evaluation using {M}aximum {E}ntropy on {G}{O} ontology and {I}nter{P}ro annotation}",
   Journal="Bioinformatics",
   Year="2018",
   Volume="34",
   Number="11",
   Pages="1884--1892",
   Month="Jun"
}

% 29343516

Stat3-mediated alterations in lysosomal membrane protein composition. Lloyd-Lewis, B.; Krueger, C. C.; Sargeant, T. J.; D'Angelo, M. E.; Deery, M. J.; Feret, R.; Howard, J. A.; Lilley, K. S.; and Watson, C. J. J Biol Chem, 293(12): 4244–4261. Mar 2018.
link bibtex

@Article{pmid29343516,
   Author="Lloyd-Lewis, B.  and Krueger, C. C.  and Sargeant, T. J.  and D'Angelo, M. E.  and Deery, M. J.  and Feret, R.  and Howard, J. A.  and Lilley, K. S.  and Watson, C. J. ",
   Title="{{S}tat3-mediated alterations in lysosomal membrane protein composition}",
   Journal="J Biol Chem",
   Year="2018",
   Volume="293",
   Number="12",
   Pages="4244--4261",
   Month="Mar"
}

% 29341429

Trans-acting translational regulatory RNA binding proteins. Harvey, R. F.; Smith, T. S.; Mulroney, T.; Queiroz, R. M. L.; Pizzinga, M.; Dezi, V.; Villenueva, E.; Ramakrishna, M.; Lilley, K. S.; and Willis, A. E. Wiley Interdiscip Rev RNA, 9(3): e1465. May 2018.
link bibtex

@Article{pmid29341429,
   Author="Harvey, R. F.  and Smith, T. S.  and Mulroney, T.  and Queiroz, R. M. L.  and Pizzinga, M.  and Dezi, V.  and Villenueva, E.  and Ramakrishna, M.  and Lilley, K. S.  and Willis, A. E. ",
   Title="{{T}rans-acting translational regulatory {R}{N}{A} binding proteins}",
   Journal="Wiley Interdiscip Rev RNA",
   Year="2018",
   Volume="9",
   Number="3",
   Pages="e1465",
   Month="May"
}

% 29168982

N-terminomics reveals control of Arabidopsis seed storage proteins and proteases by the Arg/N-end rule pathway. Zhang, H.; Gannon, L.; Hassall, K. L.; Deery, M. J.; Gibbs, D. J.; Holdsworth, M. J.; van der Hoorn, R. A. L.; Lilley, K. S.; and Theodoulou, F. L. New Phytol, 218(3): 1106–1126. May 2018.
link bibtex

@Article{pmid29168982,
   Author="Zhang, H.  and Gannon, L.  and Hassall, K. L.  and Deery, M. J.  and Gibbs, D. J.  and Holdsworth, M. J.  and van der Hoorn, R. A. L.  and Lilley, K. S.  and Theodoulou, F. L. ",
   Title="{{N}-terminomics reveals control of {A}rabidopsis seed storage proteins and proteases by the {A}rg/{N}-end rule pathway}",
   Journal="New Phytol",
   Year="2018",
   Volume="218",
   Number="3",
   Pages="1106--1126",
   Month="May"
}

% 29042236

Mass spectrometry approaches to study plant endomembrane trafficking. Parsons, H. T.; and Lilley, K. S. Semin Cell Dev Biol, 80: 123–132. Aug 2018.
link bibtex

@Article{pmid29042236,
   Author="Parsons, H. T.  and Lilley, K. S. ",
   Title="{{M}ass spectrometry approaches to study plant endomembrane trafficking}",
   Journal="Semin Cell Dev Biol",
   Year="2018",
   Volume="80",
   Pages="123--132",
   Month="Aug"
}

% 29024340

2017 (9)

Multiple marker abundance profiling: combining selected reaction monitoring and data-dependent acquisition for rapid estimation of organelle abundance in subcellular samples. Hooper, C. M.; Stevens, T. J.; Saukkonen, A.; Castleden, I. R.; Singh, P.; Mann, G. W.; Fabre, B.; Ito, J.; Deery, M. J.; Lilley, K. S.; Petzold, C. J.; Millar, A. H.; Heazlewood, J. L.; and Parsons, H. T. Plant J, 92(6): 1202–1217. Dec 2017.
link bibtex

@Article{pmid29024340,
   Author="Hooper, C. M.  and Stevens, T. J.  and Saukkonen, A.  and Castleden, I. R.  and Singh, P.  and Mann, G. W.  and Fabre, B.  and Ito, J.  and Deery, M. J.  and Lilley, K. S.  and Petzold, C. J.  and Millar, A. H.  and Heazlewood, J. L.  and Parsons, H. T. ",
   Title="{{M}ultiple marker abundance profiling: combining selected reaction monitoring and data-dependent acquisition for rapid estimation of organelle abundance in subcellular samples}",
   Journal="Plant J",
   Year="2017",
   Volume="92",
   Number="6",
   Pages="1202--1217",
   Month="Dec"
}

% 28922568

Spectral Libraries for SWATH-MS Assays for Drosophila melanogaster and Solanum lycopersicum. Fabre, B.; Korona, D.; Mata, C. I.; Parsons, H. T.; Deery, M. J.; Hertog, M. L. A. T. M.; ï, B. M.; Russell, S.; and Lilley, K. S. Proteomics, 17(21). Nov 2017.
link bibtex

@Article{pmid28922568,
   Author="Fabre, B.  and Korona, D.  and Mata, C. I.  and Parsons, H. T.  and Deery, M. J.  and Hertog, M. L. A. T. M.  and ï, B. M.  and Russell, S.  and Lilley, K. S. ",
   Title="{{S}pectral {L}ibraries for {S}{W}{A}{T}{H}-{M}{S} {A}ssays for {D}rosophila melanogaster and {S}olanum lycopersicum}",
   Journal="Proteomics",
   Year="2017",
   Volume="17",
   Number="21",
   Month="Nov"
}

% 28878040

. Loxley, G. M.; Unsworth, J.; Turton, M. J.; Jebb, A.; Lilley, K. S.; Simpson, D. M.; Rigden, D. J.; Hurst, J. L.; and Beynon, R. J. Open Biol, 7(9). Sep 2017.
link bibtex

@Article{pmid28878040,
   Author="Loxley, G. M.  and Unsworth, J.  and Turton, M. J.  and Jebb, A.  and Lilley, K. S.  and Simpson, D. M.  and Rigden, D. J.  and Hurst, J. L.  and Beynon, R. J. ",
   Title="{}",
   Journal="Open Biol",
   Year="2017",
   Volume="7",
   Number="9",
   Month="Sep"
}

% 28495876

A subcellular map of the human proteome. Thul, P. J.; kesson , L.; Wiking, M.; Mahdessian, D.; Geladaki, A.; Ait Blal, H.; Alm, T.; Asplund, A.; rk , L.; Breckels, L. M.; m , A.; Danielsson, F.; Fagerberg, L.; Fall, J.; Gatto, L.; Gnann, C.; Hober, S.; Hjelmare, M.; Johansson, F.; Lee, S.; Lindskog, C.; Mulder, J.; Mulvey, C. M.; Nilsson, P.; Oksvold, P.; Rockberg, J.; Schutten, R.; Schwenk, J. M.; Sivertsson, Å.; stedt , E.; Skogs, M.; Stadler, C.; Sullivan, D. P.; Tegel, H.; Winsnes, C.; Zhang, C.; Zwahlen, M.; Mardinoglu, A.; n , F.; von Feilitzen, K.; Lilley, K. S.; n , M.; and Lundberg, E. Science, 356(6340). May 2017.
link bibtex

@Article{pmid28495876,
   Author="Thul, P. J.  and kesson, L.  and Wiking, M.  and Mahdessian, D.  and Geladaki, A.  and Ait Blal, H.  and Alm, T.  and Asplund, A.  and rk, L.  and Breckels, L. M.  and m, A.  and Danielsson, F.  and Fagerberg, L.  and Fall, J.  and Gatto, L.  and Gnann, C.  and Hober, S.  and Hjelmare, M.  and Johansson, F.  and Lee, S.  and Lindskog, C.  and Mulder, J.  and Mulvey, C. M.  and Nilsson, P.  and Oksvold, P.  and Rockberg, J.  and Schutten, R.  and Schwenk, J. M.  and Sivertsson, Å.  and stedt, E.  and Skogs, M.  and Stadler, C.  and Sullivan, D. P.  and Tegel, H.  and Winsnes, C.  and Zhang, C.  and Zwahlen, M.  and Mardinoglu, A.  and n, F.  and von Feilitzen, K.  and Lilley, K. S.  and n, M.  and Lundberg, E. ",
   Title="{{A} subcellular map of the human proteome}",
   Journal="Science",
   Year="2017",
   Volume="356",
   Number="6340",
   Month="May"
}

% 28471460

Using hyperLOPIT to perform high-resolution mapping of the spatial proteome. Mulvey, C. M.; Breckels, L. M.; Geladaki, A.; ek , N. K.; Nightingale, D. J. H.; Christoforou, A.; Elzek, M.; Deery, M. J.; Gatto, L.; and Lilley, K. S. Nat Protoc, 12(6): 1110–1135. Jun 2017.
link bibtex

@Article{pmid28471460,
   Author="Mulvey, C. M.  and Breckels, L. M.  and Geladaki, A.  and ek, N. K.  and Nightingale, D. J. H.  and Christoforou, A.  and Elzek, M.  and Deery, M. J.  and Gatto, L.  and Lilley, K. S. ",
   Title="{{U}sing hyper{L}{O}{P}{I}{T} to perform high-resolution mapping of the spatial proteome}",
   Journal="Nat Protoc",
   Year="2017",
   Volume="12",
   Number="6",
   Pages="1110--1135",
   Month="Jun"
}

% 28369668

Selective Proteomic Proximity Labeling Assay Using Tyramide (SPPLAT): A Quantitative Method for the Proteomic Analysis of Localized Membrane-Bound Protein Clusters. Rees, J. S.; Li, X. W.; Perrett, S.; Lilley, K. S.; and Jackson, A. P. Curr Protoc Protein Sci, 88: 1–19. Apr 2017.
link bibtex

@Article{pmid28369668,
   Author="Rees, J. S.  and Li, X. W.  and Perrett, S.  and Lilley, K. S.  and Jackson, A. P. ",
   Title="{{S}elective {P}roteomic {P}roximity {L}abeling {A}ssay {U}sing {T}yramide ({S}{P}{P}{L}{A}{T}): {A} {Q}uantitative {M}ethod for the {P}roteomic {A}nalysis of {L}ocalized {M}embrane-{B}ound {P}rotein {C}lusters}",
   Journal="Curr Protoc Protein Sci",
   Year="2017",
   Volume="88",
   Pages="1--19",
   Month="Apr"
}

% 28174249

Tracking the embryonic stem cell transition from ground state pluripotency. Kalkan, T.; Olova, N.; Roode, M.; Mulas, C.; Lee, H. J.; Nett, I.; Marks, H.; Walker, R.; Stunnenberg, H. G.; Lilley, K. S.; Nichols, J.; Reik, W.; Bertone, P.; and Smith, A. Development, 144(7): 1221–1234. Apr 2017.
link bibtex

@Article{pmid28174249,
   Author="Kalkan, T.  and Olova, N.  and Roode, M.  and Mulas, C.  and Lee, H. J.  and Nett, I.  and Marks, H.  and Walker, R.  and Stunnenberg, H. G.  and Lilley, K. S.  and Nichols, J.  and Reik, W.  and Bertone, P.  and Smith, A. ",
   Title="{{T}racking the embryonic stem cell transition from ground state pluripotency}",
   Journal="Development",
   Year="2017",
   Volume="144",
   Number="7",
   Pages="1221--1234",
   Month="Apr"
}

% 28145059

Time, space, and disorder in the expanding proteome universe. Minde, D. P.; Dunker, A. K.; and Lilley, K. S. Proteomics, 17(7). Apr 2017.
link bibtex

@Article{pmid28145059,
   Author="Minde, D. P.  and Dunker, A. K.  and Lilley, K. S. ",
   Title="{{T}ime, space, and disorder in the expanding proteome universe}",
   Journal="Proteomics",
   Year="2017",
   Volume="17",
   Number="7",
   Month="Apr"
}

% 30079225

In-depth characterization of the tomato fruit pericarp proteome. Mata, C. I.; Fabre, B.; Hertog, M. L.; Parsons, H. T.; Deery, M. J.; Lilley, K. S.; and ï, B. M. Proteomics, 17(1-2). Jan 2017.
link bibtex

@Article{pmid27957804,
   Author="Mata, C. I.  and Fabre, B.  and Hertog, M. L.  and Parsons, H. T.  and Deery, M. J.  and Lilley, K. S.  and ï, B. M. ",
   Title="{{I}n-depth characterization of the tomato fruit pericarp proteome}",
   Journal="Proteomics",
   Year="2017",
   Volume="17",
   Number="1-2",
   Month="Jan"
}

% 27900350

2016 (13)

A Bioconductor workflow for processing and analysing spatial proteomics data. Breckels, L. M.; Mulvey, C. M.; Lilley, K. S.; and Gatto, L. F1000Res, 5: 2926. 2016.
link bibtex

@Article{pmid30079225,
   Author="Breckels, L. M.  and Mulvey, C. M.  and Lilley, K. S.  and Gatto, L. ",
   Title="{{A} {B}ioconductor workflow for processing and analysing spatial proteomics data}",
   Journal="F1000Res",
   Year="2016",
   Volume="5",
   Pages="2926"
}

% 27957804

embryos. Fabre, B.; Korona, D.; Nightingale, D. J.; Russell, S.; and Lilley, K. S. Data Brief, 9: 991–995. Dec 2016.
link bibtex

@Article{pmid27900350,
   Author="Fabre, B.  and Korona, D.  and Nightingale, D. J.  and Russell, S.  and Lilley, K. S. ",
   Title="{embryos}",
   Journal="Data Brief",
   Year="2016",
   Volume="9",
   Pages="991--995",
   Month="Dec"
}

% 27844044

proteome dynamics during embryogenesis. Fabre, B.; Korona, D.; Nightingale, D. J.; Russell, S.; and Lilley, K. S. Data Brief, 9: 771–775. Dec 2016.
link bibtex

@Article{pmid27844044,
   Author="Fabre, B.  and Korona, D.  and Nightingale, D. J.  and Russell, S.  and Lilley, K. S. ",
   Title="{proteome dynamics during embryogenesis}",
   Journal="Data Brief",
   Year="2016",
   Volume="9",
   Pages="771--775",
   Month="Dec"
}

% 27572163

The metabolic background is a global player in Saccharomyces gene expression epistasis. Alam, M. T.; Zelezniak, A.; lleder , M.; Shliaha, P.; Schwarz, R.; Capuano, F.; Vowinckel, J.; Radmanesfahar, E.; ger , A.; Calvani, E.; Michel, S.; rno , S.; Christen, S.; Patil, K. R.; Timmermann, B.; Lilley, K. S.; and Ralser, M. Nat Microbiol, 1: 15030. Feb 2016.
link bibtex

@Article{pmid27572163,
   Author="Alam, M. T.  and Zelezniak, A.  and lleder, M.  and Shliaha, P.  and Schwarz, R.  and Capuano, F.  and Vowinckel, J.  and Radmanesfahar, E.  and ger, A.  and Calvani, E.  and Michel, S.  and rno, S.  and Christen, S.  and Patil, K. R.  and Timmermann, B.  and Lilley, K. S.  and Ralser, M. ",
   Title="{{T}he metabolic background is a global player in {S}accharomyces gene expression epistasis}",
   Journal="Nat Microbiol",
   Year="2016",
   Volume="1",
   Pages="15030",
   Month="Feb"
}

% 27487840

Phosphorylation of the dimeric cytoplasmic domain of the phytosulfokine receptor, PSKR1. Muleya, V.; Marondedze, C.; Wheeler, J. I.; Thomas, L.; Mok, Y. F.; Griffin, M. D.; Manallack, D. T.; Kwezi, L.; Lilley, K. S.; Gehring, C.; and Irving, H. R. Biochem J, 473(19): 3081–3098. Oct 2016.
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@Article{pmid27487840,
   Author="Muleya, V.  and Marondedze, C.  and Wheeler, J. I.  and Thomas, L.  and Mok, Y. F.  and Griffin, M. D.  and Manallack, D. T.  and Kwezi, L.  and Lilley, K. S.  and Gehring, C.  and Irving, H. R. ",
   Title="{{P}hosphorylation of the dimeric cytoplasmic domain of the phytosulfokine receptor, {P}{S}{K}{R}1}",
   Journal="Biochem J",
   Year="2016",
   Volume="473",
   Number="19",
   Pages="3081--3098",
   Month="Oct"
}

% 27405932

The RNA-binding protein repertoire of Arabidopsis thaliana. Marondedze, C.; Thomas, L.; Serrano, N. L.; Lilley, K. S.; and Gehring, C. Sci Rep, 6: 29766. Jul 2016.
link bibtex

@Article{pmid27405932,
   Author="Marondedze, C.  and Thomas, L.  and Serrano, N. L.  and Lilley, K. S.  and Gehring, C. ",
   Title="{{T}he {R}{N}{A}-binding protein repertoire of {A}rabidopsis thaliana}",
   Journal="Sci Rep",
   Year="2016",
   Volume="6",
   Pages="29766",
   Month="Jul"
}

% 27175778

Learning from Heterogeneous Data Sources: An Application in Spatial Proteomics. Breckels, L. M.; Holden, S. B.; Wojnar, D.; Mulvey, C. M.; Christoforou, A.; Groen, A.; Trotter, M. W.; Kohlbacher, O.; Lilley, K. S.; and Gatto, L. PLoS Comput Biol, 12(5): e1004920. May 2016.
link bibtex

@Article{pmid27175778,
   Author="Breckels, L. M.  and Holden, S. B.  and Wojnar, D.  and Mulvey, C. M.  and Christoforou, A.  and Groen, A.  and Trotter, M. W.  and Kohlbacher, O.  and Lilley, K. S.  and Gatto, L. ",
   Title="{{L}earning from {H}eterogeneous {D}ata {S}ources: {A}n {A}pplication in {S}patial {P}roteomics}",
   Journal="PLoS Comput Biol",
   Year="2016",
   Volume="12",
   Number="5",
   Pages="e1004920",
   Month="May"
}

% 27029218

Analysis of Drosophila melanogaster proteome dynamics during embryonic development by a combination of label-free proteomics approaches. Fabre, B.; Korona, D.; Groen, A.; Vowinckel, J.; Gatto, L.; Deery, M. J.; Ralser, M.; Russell, S.; and Lilley, K. S. Proteomics, 16(15-16): 2068–2080. Aug 2016.
link bibtex

@Article{pmid27029218,
   Author="Fabre, B.  and Korona, D.  and Groen, A.  and Vowinckel, J.  and Gatto, L.  and Deery, M. J.  and Ralser, M.  and Russell, S.  and Lilley, K. S. ",
   Title="{{A}nalysis of {D}rosophila melanogaster proteome dynamics during embryonic development by a combination of label-free proteomics approaches}",
   Journal="Proteomics",
   Year="2016",
   Volume="16",
   Number="15-16",
   Pages="2068--2080",
   Month="Aug"
}

% 26808156

Impact of Azithromycin on the Quorum Sensing-Controlled Proteome of Pseudomonas aeruginosa. Swatton, J. E.; Davenport, P. W.; Maunders, E. A.; Griffin, J. L.; Lilley, K. S.; and Welch, M. PLoS One, 11(1): e0147698. 2016.
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@Article{pmid26808156,
   Author="Swatton, J. E.  and Davenport, P. W.  and Maunders, E. A.  and Griffin, J. L.  and Lilley, K. S.  and Welch, M. ",
   Title="{{I}mpact of {A}zithromycin on the {Q}uorum {S}ensing-{C}ontrolled {P}roteome of {P}seudomonas aeruginosa}",
   Journal="PLoS One",
   Year="2016",
   Volume="11",
   Number="1",
   Pages="e0147698"
}

% 26754106

A draft map of the mouse pluripotent stem cell spatial proteome. Christoforou, A.; Mulvey, C. M.; Breckels, L. M.; Geladaki, A.; Hurrell, T.; Hayward, P. C.; Naake, T.; Gatto, L.; Viner, R.; Martinez Arias, A.; and Lilley, K. S. Nat Commun, 7: 8992. Jan 2016.
link bibtex

@Article{pmid26754106,
   Author="Christoforou, A.  and Mulvey, C. M.  and Breckels, L. M.  and Geladaki, A.  and Hurrell, T.  and Hayward, P. C.  and Naake, T.  and Gatto, L.  and Viner, R.  and Martinez Arias, A.  and Lilley, K. S. ",
   Title="{{A} draft map of the mouse pluripotent stem cell spatial proteome}",
   Journal="Nat Commun",
   Year="2016",
   Volume="7",
   Pages="8992",
   Month="Jan"
}

% 26658240

A Quantitative Phosphoproteome Analysis of cGMP-Dependent Cellular Responses in Arabidopsis thaliana. Marondedze, C.; Groen, A. J.; Thomas, L.; Lilley, K. S.; and Gehring, C. Mol Plant, 9(4): 621–623. Apr 2016.
link bibtex

@Article{pmid26658240,
   Author="Marondedze, C.  and Groen, A. J.  and Thomas, L.  and Lilley, K. S.  and Gehring, C. ",
   Title="{{A} {Q}uantitative {P}hosphoproteome {A}nalysis of c{G}{M}{P}-{D}ependent {C}ellular {R}esponses in {A}rabidopsis thaliana}",
   Journal="Mol Plant",
   Year="2016",
   Volume="9",
   Number="4",
   Pages="621--623",
   Month="Apr"
}

% 26621492

Analysis of temperature-mediated changes in the wine yeast Saccharomyces bayanus var uvarum. An oenological study of how the protein content influences wine quality. oz-Bernal , E.; Deery, M. J.; guez , M. E.; Cantoral, J. M.; Howard, J.; Feret, R.; Natera, R.; Lilley, K. S.; and ndez-Acero , F. J. Proteomics, 16(4): 576–592. Feb 2016.
link bibtex

@Article{pmid26621492,
   Author="oz-Bernal, E.  and Deery, M. J.  and guez, M. E.  and Cantoral, J. M.  and Howard, J.  and Feret, R.  and Natera, R.  and Lilley, K. S.  and ndez-Acero, F. J. ",
   Title="{{A}nalysis of temperature-mediated changes in the wine yeast {S}accharomyces bayanus var uvarum. {A}n oenological study of how the protein content influences wine quality}",
   Journal="Proteomics",
   Year="2016",
   Volume="16",
   Number="4",
   Pages="576--592",
   Month="Feb"
}

% 26606900

cDNA Microarray and Proteomic Analysis. Quintela, T.; Marcelino, H.; Deery, M. J.; Feret, R.; Howard, J.; Lilley, K. S.; Albuquerque, T.; alves , I.; Duarte, A. C.; and Santos, C. R. J Neuroendocrinol, 28(1). Jan 2016.
link bibtex

@Article{pmid26606900,
   Author="Quintela, T.  and Marcelino, H.  and Deery, M. J.  and Feret, R.  and Howard, J.  and Lilley, K. S.  and Albuquerque, T.  and alves, I.  and Duarte, A. C.  and Santos, C. R. ",
   Title="{c{D}{N}{A} {M}icroarray and {P}roteomic {A}nalysis}",
   Journal="J Neuroendocrinol",
   Year="2016",
   Volume="28",
   Number="1",
   Month="Jan"
}

% 26580016

2015 (11)

Drosophila Ionotropic Receptor 25a mediates circadian clock resetting by temperature. Chen, C.; Buhl, E.; Xu, M.; Croset, V.; Rees, J. S.; Lilley, K. S.; Benton, R.; Hodge, J. J.; and Stanewsky, R. Nature, 527(7579): 516–520. Nov 2015.
link bibtex

@Article{pmid26580016,
   Author="Chen, C.  and Buhl, E.  and Xu, M.  and Croset, V.  and Rees, J. S.  and Lilley, K. S.  and Benton, R.  and Hodge, J. J.  and Stanewsky, R. ",
   Title="{{D}rosophila {I}onotropic {R}eceptor 25a mediates circadian clock resetting by temperature}",
   Journal="Nature",
   Year="2015",
   Volume="527",
   Number="7579",
   Pages="516--520",
   Month="Nov"
}

% 26372724

Focus on Quantitative Proteomics. Lilley, K. S.; Beynon, R. J.; Eyers, C. E.; and Hubbard, S. J. Proteomics, 15(18): 3101–3103. Sep 2015.
link bibtex

@Article{pmid26372724,
   Author="Lilley, K. S.  and Beynon, R. J.  and Eyers, C. E.  and Hubbard, S. J. ",
   Title="{{F}ocus on {Q}uantitative {P}roteomics}",
   Journal="Proteomics",
   Year="2015",
   Volume="15",
   Number="18",
   Pages="3101--3103",
   Month="Sep"
}

% 26355100

Protein Neighbors and Proximity Proteomics. Rees, J. S.; Li, X. W.; Perrett, S.; Lilley, K. S.; and Jackson, A. P. Mol Cell Proteomics, 14(11): 2848–2856. Nov 2015.
link bibtex

@Article{pmid26355100,
   Author="Rees, J. S.  and Li, X. W.  and Perrett, S.  and Lilley, K. S.  and Jackson, A. P. ",
   Title="{{P}rotein {N}eighbors and {P}roximity {P}roteomics}",
   Journal="Mol Cell Proteomics",
   Year="2015",
   Volume="14",
   Number="11",
   Pages="2848--2856",
   Month="Nov"
}

% 26280509

-Klotho Expression in Human Tissues. Lim, K.; Groen, A.; Molostvov, G.; Lu, T.; Lilley, K. S.; Snead, D.; James, S.; Wilkinson, I. B.; Ting, S.; Hsiao, L. L.; Hiemstra, T. F.; and Zehnder, D. J Clin Endocrinol Metab, 100(10): E1308–1318. Oct 2015.
link bibtex

@Article{pmid26280509,
   Author="Lim, K.  and Groen, A.  and Molostvov, G.  and Lu, T.  and Lilley, K. S.  and Snead, D.  and James, S.  and Wilkinson, I. B.  and Ting, S.  and Hsiao, L. L.  and Hiemstra, T. F.  and Zehnder, D. ",
   Title="{-{K}lotho {E}xpression in {H}uman {T}issues}",
   Journal="J Clin Endocrinol Metab",
   Year="2015",
   Volume="100",
   Number="10",
   Pages="E1308--1318",
   Month="Oct"
}

% 26217713

The chicken B-cell line DT40 proteome, beadome and interactomes. Rees, J. S.; Lilley, K. S.; and Jackson, A. P. Data Brief, 3: 29–33. Jun 2015.
link bibtex

@Article{pmid26217713,
   Author="Rees, J. S.  and Lilley, K. S.  and Jackson, A. P. ",
   Title="{{T}he chicken {B}-cell line {D}{T}40 proteome, beadome and interactomes}",
   Journal="Data Brief",
   Year="2015",
   Volume="3",
   Pages="29--33",
   Month="Jun"
}

% 26059426

Dynamic Proteomic Profiling of Extra-Embryonic Endoderm Differentiation in Mouse Embryonic Stem Cells. Mulvey, C. M.; ter , C.; Gatto, L.; Dikicioglu, D.; Fidaner, I. B.; Christoforou, A.; Deery, M. J.; Cho, L. T.; Niakan, K. K.; Martinez-Arias, A.; and Lilley, K. S. Stem Cells, 33(9): 2712–2725. Sep 2015.
link bibtex

@Article{pmid26059426,
   Author="Mulvey, C. M.  and ter, C.  and Gatto, L.  and Dikicioglu, D.  and Fidaner, I. B.  and Christoforou, A.  and Deery, M. J.  and Cho, L. T.  and Niakan, K. K.  and Martinez-Arias, A.  and Lilley, K. S. ",
   Title="{{D}ynamic {P}roteomic {P}rofiling of {E}xtra-{E}mbryonic {E}ndoderm {D}ifferentiation in {M}ouse {E}mbryonic {S}tem {C}ells}",
   Journal="Stem Cells",
   Year="2015",
   Volume="33",
   Number="9",
   Pages="2712--2725",
   Month="Sep"
}

% 25829300

Selective Proteomic Proximity Labeling Assay Using Tyramide (SPPLAT): A Quantitative Method for the Proteomic Analysis of Localized Membrane-Bound Protein Clusters. Rees, J. S.; Li, X. W.; Perrett, S.; Lilley, K. S.; and Jackson, A. P. Curr Protoc Protein Sci, 80: 1–19. Apr 2015.
link bibtex

@Article{pmid25829300,
   Author="Rees, J. S.  and Li, X. W.  and Perrett, S.  and Lilley, K. S.  and Jackson, A. P. ",
   Title="{{S}elective {P}roteomic {P}roximity {L}abeling {A}ssay {U}sing {T}yramide ({S}{P}{P}{L}{A}{T}): {A} {Q}uantitative {M}ethod for the {P}roteomic {A}nalysis of {L}ocalized {M}embrane-{B}ound {P}rotein {C}lusters}",
   Journal="Curr Protoc Protein Sci",
   Year="2015",
   Volume="80",
   Pages="1--19",
   Month="Apr"
}

% 25823882

Analysis of Quality-Related Parameters in Mature Kernels of Polygalacturonase Inhibiting Protein (PGIP) Transgenic Bread Wheat Infected with Fusarium graminearum. Masci, S.; Laino, P.; Janni, M.; Botticella, E.; Di Carli, M.; Benvenuto, E.; Danieli, P. P.; Lilley, K. S.; Lafiandra, D.; and D'Ovidio, R. J Agric Food Chem, 63(15): 3962–3969. Apr 2015.
link bibtex

@Article{pmid25823882,
   Author="Masci, S.  and Laino, P.  and Janni, M.  and Botticella, E.  and Di Carli, M.  and Benvenuto, E.  and Danieli, P. P.  and Lilley, K. S.  and Lafiandra, D.  and D'Ovidio, R. ",
   Title="{{A}nalysis of {Q}uality-{R}elated {P}arameters in {M}ature {K}ernels of {P}olygalacturonase {I}nhibiting {P}rotein ({P}{G}{I}{P}) {T}ransgenic {B}read {W}heat {I}nfected with {F}usarium graminearum}",
   Journal="J Agric Food Chem",
   Year="2015",
   Volume="63",
   Number="15",
   Pages="3962--3969",
   Month="Apr"
}

% 25728785

Quantitative proteomics analysis of the Arg/N-end rule pathway of targeted degradation in Arabidopsis roots. Zhang, H.; Deery, M. J.; Gannon, L.; Powers, S. J.; Lilley, K. S.; and Theodoulou, F. L. Proteomics, 15(14): 2447–2457. Jul 2015.
link bibtex

@Article{pmid25728785,
   Author="Zhang, H.  and Deery, M. J.  and Gannon, L.  and Powers, S. J.  and Lilley, K. S.  and Theodoulou, F. L. ",
   Title="{{Q}uantitative proteomics analysis of the {A}rg/{N}-end rule pathway of targeted degradation in {A}rabidopsis roots}",
   Journal="Proteomics",
   Year="2015",
   Volume="15",
   Number="14",
   Pages="2447--2457",
   Month="Jul"
}

% 25534881

SILAC-iPAC: a quantitative method for distinguishing genuine from non-specific components of protein complexes by parallel affinity capture. Rees, J. S.; Lilley, K. S.; and Jackson, A. P. J Proteomics, 115: 143–156. Feb 2015.
link bibtex

@Article{pmid25534881,
   Author="Rees, J. S.  and Lilley, K. S.  and Jackson, A. P. ",
   Title="{{S}{I}{L}{A}{C}-i{P}{A}{C}: a quantitative method for distinguishing genuine from non-specific components of protein complexes by parallel affinity capture}",
   Journal="J Proteomics",
   Year="2015",
   Volume="115",
   Pages="143--156",
   Month="Feb"
}

% 25488299

Mep72, a metzincin protease that is preferentially secreted by biofilms of Pseudomonas aeruginosa. Passmore, I. J.; Nishikawa, K.; Lilley, K. S.; Bowden, S. D.; Chung, J. C.; and Welch, M. J Bacteriol, 197(4): 762–773. Feb 2015.
link bibtex

@Article{pmid25488299,
   Author="Passmore, I. J.  and Nishikawa, K.  and Lilley, K. S.  and Bowden, S. D.  and Chung, J. C.  and Welch, M. ",
   Title="{{M}ep72, a metzincin protease that is preferentially secreted by biofilms of {P}seudomonas aeruginosa}",
   Journal="J Bacteriol",
   Year="2015",
   Volume="197",
   Number="4",
   Pages="762--773",
   Month="Feb"
}

% 25453831

2014 (17)

Toward a comprehensive map of the effectors of rab GTPases. Gillingham, A. K.; Sinka, R.; Torres, I. L.; Lilley, K. S.; and Munro, S. Dev Cell, 31(3): 358–373. Nov 2014.
link bibtex

@Article{pmid25453831,
   Author="Gillingham, A. K.  and Sinka, R.  and Torres, I. L.  and Lilley, K. S.  and Munro, S. ",
   Title="{{T}oward a comprehensive map of the effectors of rab {G}{T}{P}ases}",
   Journal="Dev Cell",
   Year="2014",
   Volume="31",
   Number="3",
   Pages="358--373",
   Month="Nov"
}

% 25294943

Analysis of the expression patterns, subcellular localisations and interaction partners of Drosophila proteins using a pigP protein trap library. Lowe, N.; Rees, J. S.; Roote, J.; Ryder, E.; Armean, I. M.; Johnson, G.; Drummond, E.; Spriggs, H.; Drummond, J.; Magbanua, J. P.; Naylor, H.; Sanson, B.; Bastock, R.; Huelsmann, S.; Trovisco, V.; Landgraf, M.; Knowles-Barley, S.; Armstrong, J. D.; White-Cooper, H.; Hansen, C.; Phillips, R. G.; Lilley, K. S.; Russell, S.; and St Johnston, D. Development, 141(20): 3994–4005. Oct 2014.
link bibtex

@Article{pmid25294943,
   Author="Lowe, N.  and Rees, J. S.  and Roote, J.  and Ryder, E.  and Armean, I. M.  and Johnson, G.  and Drummond, E.  and Spriggs, H.  and Drummond, J.  and Magbanua, J. P.  and Naylor, H.  and Sanson, B.  and Bastock, R.  and Huelsmann, S.  and Trovisco, V.  and Landgraf, M.  and Knowles-Barley, S.  and Armstrong, J. D.  and White-Cooper, H.  and Hansen, C.  and Phillips, R. G.  and Lilley, K. S.  and Russell, S.  and St Johnston, D. ",
   Title="{{A}nalysis of the expression patterns, subcellular localisations and interaction partners of {D}rosophila proteins using a pig{P} protein trap library}",
   Journal="Development",
   Year="2014",
   Volume="141",
   Number="20",
   Pages="3994--4005",
   Month="Oct"
}

% 25122472

Label-free protein quantification for plant Golgi protein localization and abundance. Nikolovski, N.; Shliaha, P. V.; Gatto, L.; Dupree, P.; and Lilley, K. S. Plant Physiol, 166(2): 1033–1043. Oct 2014.
link bibtex

@Article{pmid25122472,
   Author="Nikolovski, N.  and Shliaha, P. V.  and Gatto, L.  and Dupree, P.  and Lilley, K. S. ",
   Title="{{L}abel-free protein quantification for plant {G}olgi protein localization and abundance}",
   Journal="Plant Physiol",
   Year="2014",
   Volume="166",
   Number="2",
   Pages="1033--1043",
   Month="Oct"
}

% 24872594

Deciphering thylakoid sub-compartments using a mass spectrometry-based approach. Tomizioli, M.; Lazar, C.; re , S.; Burger, T.; Salvi, D.; Gatto, L.; Moyet, L.; Breckels, L. M.; Hesse, A. M.; Lilley, K. S.; Seigneurin-Berny, D.; Finazzi, G.; Rolland, N.; and Ferro, M. Mol Cell Proteomics, 13(8): 2147–2167. Aug 2014.
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@Article{pmid24872594,
   Author="Tomizioli, M.  and Lazar, C.  and re, S.  and Burger, T.  and Salvi, D.  and Gatto, L.  and Moyet, L.  and Breckels, L. M.  and Hesse, A. M.  and Lilley, K. S.  and Seigneurin-Berny, D.  and Finazzi, G.  and Rolland, N.  and Ferro, M. ",
   Title="{{D}eciphering thylakoid sub-compartments using a mass spectrometry-based approach}",
   Journal="Mol Cell Proteomics",
   Year="2014",
   Volume="13",
   Number="8",
   Pages="2147--2167",
   Month="Aug"
}

% 24854137

Additional precursor purification in isobaric mass tagging experiments by traveling wave ion mobility separation (TWIMS). Shliaha, P. V.; Jukes-Jones, R.; Christoforou, A.; Fox, J.; Hughes, C.; Langridge, J.; Cain, K.; and Lilley, K. S. J Proteome Res, 13(7): 3360–3369. Jul 2014.
link bibtex

@Article{pmid24854137,
   Author="Shliaha, P. V.  and Jukes-Jones, R.  and Christoforou, A.  and Fox, J.  and Hughes, C.  and Langridge, J.  and Cain, K.  and Lilley, K. S. ",
   Title="{{A}dditional precursor purification in isobaric mass tagging experiments by traveling wave ion mobility separation ({T}{W}{I}{M}{S})}",
   Journal="J Proteome Res",
   Year="2014",
   Volume="13",
   Number="7",
   Pages="3360--3369",
   Month="Jul"
}

% 24846987

A foundation for reliable spatial proteomics data analysis. Gatto, L.; Breckels, L. M.; Burger, T.; Nightingale, D. J.; Groen, A. J.; Campbell, C.; Nikolovski, N.; Mulvey, C. M.; Christoforou, A.; Ferro, M.; and Lilley, K. S. Mol Cell Proteomics, 13(8): 1937–1952. Aug 2014.
link bibtex

@Article{pmid24846987,
   Author="Gatto, L.  and Breckels, L. M.  and Burger, T.  and Nightingale, D. J.  and Groen, A. J.  and Campbell, C.  and Nikolovski, N.  and Mulvey, C. M.  and Christoforou, A.  and Ferro, M.  and Lilley, K. S. ",
   Title="{{A} foundation for reliable spatial proteomics data analysis}",
   Journal="Mol Cell Proteomics",
   Year="2014",
   Volume="13",
   Number="8",
   Pages="1937--1952",
   Month="Aug"
}

% 24791987

Determining protein subcellular localization in mammalian cell culture with biochemical fractionation and iTRAQ 8-plex quantification. Christoforou, A.; Arias, A. M.; and Lilley, K. S. Methods Mol Biol, 1156: 157–174. 2014.
link bibtex

@Article{pmid24791987,
   Author="Christoforou, A.  and Arias, A. M.  and Lilley, K. S. ",
   Title="{{D}etermining protein subcellular localization in mammalian cell culture with biochemical fractionation and i{T}{R}{A}{Q} 8-plex quantification}",
   Journal="Methods Mol Biol",
   Year="2014",
   Volume="1156",
   Pages="157--174"
}

% 24760958

qcML: an exchange format for quality control metrics from mass spectrometry experiments. Walzer, M.; Pernas, L. E.; Nasso, S.; Bittremieux, W.; Nahnsen, S.; Kelchtermans, P.; Pichler, P.; van den Toorn, H. W.; Staes, A.; Vandenbussche, J.; Mazanek, M.; Taus, T.; Scheltema, R. A.; Kelstrup, C. D.; Gatto, L.; van Breukelen, B.; Aiche, S.; Valkenborg, D.; Laukens, K.; Lilley, K. S.; Olsen, J. V.; Heck, A. J.; Mechtler, K.; Aebersold, R.; Gevaert, K.; no , J. A.; Hermjakob, H.; Kohlbacher, O.; and Martens, L. Mol Cell Proteomics, 13(8): 1905–1913. Aug 2014.
link bibtex

@Article{pmid24760958,
   Author="Walzer, M.  and Pernas, L. E.  and Nasso, S.  and Bittremieux, W.  and Nahnsen, S.  and Kelchtermans, P.  and Pichler, P.  and van den Toorn, H. W.  and Staes, A.  and Vandenbussche, J.  and Mazanek, M.  and Taus, T.  and Scheltema, R. A.  and Kelstrup, C. D.  and Gatto, L.  and van Breukelen, B.  and Aiche, S.  and Valkenborg, D.  and Laukens, K.  and Lilley, K. S.  and Olsen, J. V.  and Heck, A. J.  and Mechtler, K.  and Aebersold, R.  and Gevaert, K.  and no, J. A.  and Hermjakob, H.  and Kohlbacher, O.  and Martens, L. ",
   Title="{qc{M}{L}: an exchange format for quality control metrics from mass spectrometry experiments}",
   Journal="Mol Cell Proteomics",
   Year="2014",
   Volume="13",
   Number="8",
   Pages="1905--1913",
   Month="Aug"
}

% 24727715

Proteome labeling and protein identification in specific tissues and at specific developmental stages in an animal. Elliott, T. S.; Townsley, F. M.; Bianco, A.; Ernst, R. J.; Sachdeva, A.; sser , S. J.; Davis, L.; Lang, K.; Pisa, R.; Greiss, S.; Lilley, K. S.; and Chin, J. W. Nat Biotechnol, 32(5): 465–472. May 2014.
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@Article{pmid24727715,
   Author="Elliott, T. S.  and Townsley, F. M.  and Bianco, A.  and Ernst, R. J.  and Sachdeva, A.  and sser, S. J.  and Davis, L.  and Lang, K.  and Pisa, R.  and Greiss, S.  and Lilley, K. S.  and Chin, J. W. ",
   Title="{{P}roteome labeling and protein identification in specific tissues and at specific developmental stages in an animal}",
   Journal="Nat Biotechnol",
   Year="2014",
   Volume="32",
   Number="5",
   Pages="465--472",
   Month="May"
}

% 24706754

New insights into the DT40 B cell receptor cluster using a proteomic proximity labeling assay. Li, X. W.; Rees, J. S.; Xue, P.; Zhang, H.; Hamaia, S. W.; Sanderson, B.; Funk, P. E.; Farndale, R. W.; Lilley, K. S.; Perrett, S.; and Jackson, A. P. J Biol Chem, 289(21): 14434–14447. May 2014.
link bibtex

@Article{pmid24706754,
   Author="Li, X. W.  and Rees, J. S.  and Xue, P.  and Zhang, H.  and Hamaia, S. W.  and Sanderson, B.  and Funk, P. E.  and Farndale, R. W.  and Lilley, K. S.  and Perrett, S.  and Jackson, A. P. ",
   Title="{{N}ew insights into the {D}{T}40 {B} cell receptor cluster using a proteomic proximity labeling assay}",
   Journal="J Biol Chem",
   Year="2014",
   Volume="289",
   Number="21",
   Pages="14434--14447",
   Month="May"
}

% 24700864

Human urinary exosomes as innate immune effectors. Hiemstra, T. F.; Charles, P. D.; Gracia, T.; Hester, S. S.; Gatto, L.; Al-Lamki, R.; Floto, R. A.; Su, Y.; Skepper, J. N.; Lilley, K. S.; and Karet Frankl, F. E. J Am Soc Nephrol, 25(9): 2017–2027. Sep 2014.
link bibtex

@Article{pmid24700864,
   Author="Hiemstra, T. F.  and Charles, P. D.  and Gracia, T.  and Hester, S. S.  and Gatto, L.  and Al-Lamki, R.  and Floto, R. A.  and Su, Y.  and Skepper, J. N.  and Lilley, K. S.  and Karet Frankl, F. E. ",
   Title="{{H}uman urinary exosomes as innate immune effectors}",
   Journal="J Am Soc Nephrol",
   Year="2014",
   Volume="25",
   Number="9",
   Pages="2017--2027",
   Month="Sep"
}

% 24510675

Protein profiling using two-dimensional difference gel electrophoresis (2-D DIGE). Feret, R.; and Lilley, K. S. Curr Protoc Protein Sci, 75: 1–22. Feb 2014.
link bibtex

@Article{pmid24510675,
   Author="Feret, R.  and Lilley, K. S. ",
   Title="{{P}rotein profiling using two-dimensional difference gel electrophoresis (2-{D} {D}{I}{G}{E})}",
   Journal="Curr Protoc Protein Sci",
   Year="2014",
   Volume="75",
   Pages="1--22",
   Month="Feb"
}

% 24510422

A protocol for the subcellular fractionation of Saccharomyces cerevisiae using nitrogen cavitation and density gradient centrifugation. Wang, Y.; Lilley, K. S.; and Oliver, S. G. Yeast, 31(4): 127–135. Apr 2014.
link bibtex

@Article{pmid24510422,
   Author="Wang, Y.  and Lilley, K. S.  and Oliver, S. G. ",
   Title="{{A} protocol for the subcellular fractionation of {S}accharomyces cerevisiae using nitrogen cavitation and density gradient centrifugation}",
   Journal="Yeast",
   Year="2014",
   Volume="31",
   Number="4",
   Pages="127--135",
   Month="Apr"
}

% 24421388

Dynamic regulation of the COP9 signalosome in response to DNA damage. zesi-Levi , M. G.; Ben-Nissan, G.; Bianchi, E.; Zhou, H.; Deery, M. J.; Lilley, K. S.; Levin, Y.; and Sharon, M. Mol Cell Biol, 34(6): 1066–1076. Mar 2014.
link bibtex

@Article{pmid24421388,
   Author="zesi-Levi, M. G.  and Ben-Nissan, G.  and Bianchi, E.  and Zhou, H.  and Deery, M. J.  and Lilley, K. S.  and Levin, Y.  and Sharon, M. ",
   Title="{{D}ynamic regulation of the {C}{O}{P}9 signalosome in response to {D}{N}{A} damage}",
   Journal="Mol Cell Biol",
   Year="2014",
   Volume="34",
   Number="6",
   Pages="1066--1076",
   Month="Mar"
}

% 24413670

Mass-spectrometry-based spatial proteomics data analysis using pRoloc and pRolocdata. Gatto, L.; Breckels, L. M.; Wieczorek, S.; Burger, T.; and Lilley, K. S. Bioinformatics, 30(9): 1322–1324. May 2014.
link bibtex

@Article{pmid24413670,
   Author="Gatto, L.  and Breckels, L. M.  and Wieczorek, S.  and Burger, T.  and Lilley, K. S. ",
   Title="{{M}ass-spectrometry-based spatial proteomics data analysis using p{R}oloc and p{R}olocdata}",
   Journal="Bioinformatics",
   Year="2014",
   Volume="30",
   Number="9",
   Pages="1322--1324",
   Month="May"
}

% 24344820

Identification of trans-golgi network proteins in Arabidopsis thaliana root tissue. Groen, A. J.; s , G.; Breckels, L. M.; Gatto, L.; Aniento, F.; and Lilley, K. S. J Proteome Res, 13(2): 763–776. Feb 2014.
link bibtex

@Article{pmid24344820,
   Author="Groen, A. J.  and s, G.  and Breckels, L. M.  and Gatto, L.  and Aniento, F.  and Lilley, K. S. ",
   Title="{{I}dentification of trans-golgi network proteins in {A}rabidopsis thaliana root tissue}",
   Journal="J Proteome Res",
   Year="2014",
   Volume="13",
   Number="2",
   Pages="763--776",
   Month="Feb"
}

% 24267595

Remodelling of a polypyrimidine tract-binding protein complex during apoptosis activates cellular IRESs. King, H. A.; Cobbold, L. C.; Pichon, X.; yry , T.; Wilson, L. A.; Booden, H.; Jukes-Jones, R.; Cain, K.; Lilley, K. S.; Bushell, M.; and Willis, A. E. Cell Death Differ, 21(1): 161–171. Jan 2014.
link bibtex

@Article{pmid24141718,
   Author="King, H. A.  and Cobbold, L. C.  and Pichon, X.  and yry, T.  and Wilson, L. A.  and Booden, H.  and Jukes-Jones, R.  and Cain, K.  and Lilley, K. S.  and Bushell, M.  and Willis, A. E. ",
   Title="{{R}emodelling of a polypyrimidine tract-binding protein complex during apoptosis activates cellular {I}{R}{E}{S}s}",
   Journal="Cell Death Differ",
   Year="2014",
   Volume="21",
   Number="1",
   Pages="161--171",
   Month="Jan"
}

% 23963945

2013 (11)

RNA-seq reveals the RNA binding proteins, Hfq and RsmA, play various roles in virulence, antibiotic production and genomic flux in Serratia sp. ATCC 39006. Wilf, N. M.; Reid, A. J.; Ramsay, J. P.; Williamson, N. R.; Croucher, N. J.; Gatto, L.; Hester, S. S.; Goulding, D.; Barquist, L.; Lilley, K. S.; Kingsley, R. A.; Dougan, G.; and Salmond, G. P. BMC Genomics, 14(1): 822. Nov 2013.
link bibtex

@Article{pmid24267595,
   Author="Wilf, N. M.  and Reid, A. J.  and Ramsay, J. P.  and Williamson, N. R.  and Croucher, N. J.  and Gatto, L.  and Hester, S. S.  and Goulding, D.  and Barquist, L.  and Lilley, K. S.  and Kingsley, R. A.  and Dougan, G.  and Salmond, G. P. ",
   Title="{{R}{N}{A}-seq reveals the {R}{N}{A} binding proteins, {H}fq and {R}sm{A}, play various roles in virulence, antibiotic production and genomic flux in {S}erratia sp. {A}{T}{C}{C} 39006}",
   Journal="BMC Genomics",
   Year="2013",
   Volume="14",
   Number="1",
   Pages="822",
   Month="Nov"
}

% 24141718

Identification of protein biomarkers in human serum using iTRAQ and shotgun mass spectrometry. Koutroukides, T. A.; Jaros, J. A.; Amess, B.; Martins-de-Souza, D.; Guest, P. C.; Rahmoune, H.; Levin, Y.; Deery, M.; Charles, P. D.; Hester, S.; Groen, A.; Christoforou, A.; Howard, J.; Bond, N.; Bahn, S.; and Lilley, K. S. Methods Mol Biol, 1061: 291–307. 2013.
link bibtex

@Article{pmid23963945,
   Author="Koutroukides, T. A.  and Jaros, J. A.  and Amess, B.  and Martins-de-Souza, D.  and Guest, P. C.  and Rahmoune, H.  and Levin, Y.  and Deery, M.  and Charles, P. D.  and Hester, S.  and Groen, A.  and Christoforou, A.  and Howard, J.  and Bond, N.  and Bahn, S.  and Lilley, K. S. ",
   Title="{{I}dentification of protein biomarkers in human serum using i{T}{R}{A}{Q} and shotgun mass spectrometry}",
   Journal="Methods Mol Biol",
   Year="2013",
   Volume="1061",
   Pages="291--307"
}

% 23708290

Cardioprotection by S-nitrosation of a cysteine switch on mitochondrial complex I. Chouchani, E. T.; Methner, C.; Nadtochiy, S. M.; Logan, A.; Pell, V. R.; Ding, S.; James, A. M.; é, H. M.; Reinhold, J.; Lilley, K. S.; Partridge, L.; Fearnley, I. M.; Robinson, A. J.; Hartley, R. C.; Smith, R. A.; Krieg, T.; Brookes, P. S.; and Murphy, M. P. Nat Med, 19(6): 753–759. Jun 2013.
link bibtex

@Article{pmid23708290,
   Author="Chouchani, E. T.  and Methner, C.  and Nadtochiy, S. M.  and Logan, A.  and Pell, V. R.  and Ding, S.  and James, A. M.  and é, H. M.  and Reinhold, J.  and Lilley, K. S.  and Partridge, L.  and Fearnley, I. M.  and Robinson, A. J.  and Hartley, R. C.  and Smith, R. A.  and Krieg, T.  and Brookes, P. S.  and Murphy, M. P. ",
   Title="{{C}ardioprotection by {S}-nitrosation of a cysteine switch on mitochondrial complex {I}}",
   Journal="Nat Med",
   Year="2013",
   Volume="19",
   Number="6",
   Pages="753--759",
   Month="Jun"
}

% 23523639

The effect of organelle discovery upon sub-cellular protein localisation. Breckels, L. M.; Gatto, L.; Christoforou, A.; Groen, A. J.; Lilley, K. S.; and Trotter, M. W. J Proteomics, 88: 129–140. Aug 2013.
link bibtex

@Article{pmid23523639,
   Author="Breckels, L. M.  and Gatto, L.  and Christoforou, A.  and Groen, A. J.  and Lilley, K. S.  and Trotter, M. W. ",
   Title="{{T}he effect of organelle discovery upon sub-cellular protein localisation}",
   Journal="J Proteomics",
   Year="2013",
   Volume="88",
   Pages="129--140",
   Month="Aug"
}

% 23514362

Effects of traveling wave ion mobility separation on data independent acquisition in proteomics studies. Shliaha, P. V.; Bond, N. J.; Gatto, L.; and Lilley, K. S. J Proteome Res, 12(6): 2323–2339. Jun 2013.
link bibtex

@Article{pmid23514362,
   Author="Shliaha, P. V.  and Bond, N. J.  and Gatto, L.  and Lilley, K. S. ",
   Title="{{E}ffects of traveling wave ion mobility separation on data independent acquisition in proteomics studies}",
   Journal="J Proteome Res",
   Year="2013",
   Volume="12",
   Number="6",
   Pages="2323--2339",
   Month="Jun"
}

% 23510225

Improving qualitative and quantitative performance for MS(E)-based label-free proteomics. Bond, N. J.; Shliaha, P. V.; Lilley, K. S.; and Gatto, L. J Proteome Res, 12(6): 2340–2353. Jun 2013.
link bibtex

@Article{pmid23510225,
   Author="Bond, N. J.  and Shliaha, P. V.  and Lilley, K. S.  and Gatto, L. ",
   Title="{{I}mproving qualitative and quantitative performance for {M}{S}({E})-based label-free proteomics}",
   Journal="J Proteome Res",
   Year="2013",
   Volume="12",
   Number="6",
   Pages="2340--2353",
   Month="Jun"
}

% 23319436

Interlaboratory studies and initiatives developing standards for proteomics. Ivanov, A. R.; Colangelo, C. M.; Dufresne, C. P.; Friedman, D. B.; Lilley, K. S.; Mechtler, K.; Phinney, B. S.; Rose, K. L.; Rudnick, P. A.; Searle, B. C.; Shaffer, S. A.; and Weintraub, S. T. Proteomics, 13(6): 904–909. Mar 2013.
link bibtex

@Article{pmid23319436,
   Author="Ivanov, A. R.  and Colangelo, C. M.  and Dufresne, C. P.  and Friedman, D. B.  and Lilley, K. S.  and Mechtler, K.  and Phinney, B. S.  and Rose, K. L.  and Rudnick, P. A.  and Searle, B. C.  and Shaffer, S. A.  and Weintraub, S. T. ",
   Title="{{I}nterlaboratory studies and initiatives developing standards for proteomics}",
   Journal="Proteomics",
   Year="2013",
   Volume="13",
   Number="6",
   Pages="904--909",
   Month="Mar"
}

% 23289948

Structural and functional characteristics of cGMP-dependent methionine oxidation in Arabidopsis thaliana proteins. Marondedze, C.; Turek, I.; Parrott, B.; Thomas, L.; Jankovic, B.; Lilley, K. S.; and Gehring, C. Cell Commun Signal, 11(1): 1. Jan 2013.
link bibtex

@Article{pmid23289948,
   Author="Marondedze, C.  and Turek, I.  and Parrott, B.  and Thomas, L.  and Jankovic, B.  and Lilley, K. S.  and Gehring, C. ",
   Title="{{S}tructural and functional characteristics of c{G}{M}{P}-dependent methionine oxidation in {A}rabidopsis thaliana proteins}",
   Journal="Cell Commun Signal",
   Year="2013",
   Volume="11",
   Number="1",
   Pages="1",
   Month="Jan"
}

% 24741437

The beauty of being (label)-free: sample preparation methods for SWATH-MS and next-generation targeted proteomics. Vowinckel, J.; Capuano, F.; Campbell, K.; Deery, M. J.; Lilley, K. S.; and Ralser, M. F1000Res, 2: 272. 2013.
link bibtex

@Article{pmid24741437,
   Author="Vowinckel, J.  and Capuano, F.  and Campbell, K.  and Deery, M. J.  and Lilley, K. S.  and Ralser, M. ",
   Title="{{T}he beauty of being (label)-free: sample preparation methods for {S}{W}{A}{T}{H}-{M}{S} and next-generation targeted proteomics}",
   Journal="F1000Res",
   Year="2013",
   Volume="2",
   Pages="272"
}

% 23252521

A proteomic approach identifies many novel palmitoylated proteins in Arabidopsis. Hemsley, P. A.; Weimar, T.; Lilley, K. S.; Dupree, P.; and Grierson, C. S. New Phytol, 197(3): 805–814. Feb 2013.
link bibtex

@Article{pmid23252521,
   Author="Hemsley, P. A.  and Weimar, T.  and Lilley, K. S.  and Dupree, P.  and Grierson, C. S. ",
   Title="{{A} proteomic approach identifies many novel palmitoylated proteins in {A}rabidopsis}",
   Journal="New Phytol",
   Year="2013",
   Volume="197",
   Number="3",
   Pages="805--814",
   Month="Feb"
}

% 23079070

Popular computational methods to assess multiprotein complexes derived from label-free affinity purification and mass spectrometry (AP-MS) experiments. Armean, I. M.; Lilley, K. S.; and Trotter, M. W. Mol Cell Proteomics, 12(1): 1–13. Jan 2013.
link bibtex

@Article{pmid23071097,
   Author="Armean, I. M.  and Lilley, K. S.  and Trotter, M. W. ",
   Title="{{P}opular computational methods to assess multiprotein complexes derived from label-free affinity purification and mass spectrometry ({A}{P}-{M}{S}) experiments}",
   Journal="Mol Cell Proteomics",
   Year="2013",
   Volume="12",
   Number="1",
   Pages="1--13",
   Month="Jan"
}

% 22923678

2012 (6)

Pipeline to assess the greatest source of technical variance in quantitative proteomics using metabolic labelling. Russell, M. R.; and Lilley, K. S. J Proteomics, 77: 441–454. Dec 2012.
link bibtex

@Article{pmid23079070,
   Author="Russell, M. R.  and Lilley, K. S. ",
   Title="{{P}ipeline to assess the greatest source of technical variance in quantitative proteomics using metabolic labelling}",
   Journal="J Proteomics",
   Year="2012",
   Volume="77",
   Pages="441--454",
   Month="Dec"
}

% 23071097

Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski, N.; Rubtsov, D.; Segura, M. P.; Miles, G. P.; Stevens, T. J.; Dunkley, T. P.; Munro, S.; Lilley, K. S.; and Dupree, P. Plant Physiol, 160(2): 1037–1051. Oct 2012.
link bibtex

@Article{pmid22923678,
   Author="Nikolovski, N.  and Rubtsov, D.  and Segura, M. P.  and Miles, G. P.  and Stevens, T. J.  and Dunkley, T. P.  and Munro, S.  and Lilley, K. S.  and Dupree, P. ",
   Title="{{P}utative glycosyltransferases and other plant {G}olgi apparatus proteins are revealed by {L}{O}{P}{I}{T} proteomics}",
   Journal="Plant Physiol",
   Year="2012",
   Volume="160",
   Number="2",
   Pages="1037--1051",
   Month="Oct"
}

% 22804252

MRMaid 2.0: mining PRIDE for evidence-based SRM transitions. Fan, J.; Mohareb, F.; Bond, N. J.; Lilley, K. S.; and Bessant, C. OMICS, 16(9): 483–488. Sep 2012.
link bibtex

@Article{pmid22804252,
   Author="Fan, J.  and Mohareb, F.  and Bond, N. J.  and Lilley, K. S.  and Bessant, C. ",
   Title="{{M}{R}{M}aid 2.0: mining {P}{R}{I}{D}{E} for evidence-based {S}{R}{M} transitions}",
   Journal="OMICS",
   Year="2012",
   Volume="16",
   Number="9",
   Pages="483--488",
   Month="Sep"
}

% 22580419

Isobaric tagging approaches in quantitative proteomics: the ups and downs. Christoforou, A. L.; and Lilley, K. S. Anal Bioanal Chem, 404(4): 1029–1037. Sep 2012.
link bibtex

@Article{pmid22580419,
   Author="Christoforou, A. L.  and Lilley, K. S. ",
   Title="{{I}sobaric tagging approaches in quantitative proteomics: the ups and downs}",
   Journal="Anal Bioanal Chem",
   Year="2012",
   Volume="404",
   Number="4",
   Pages="1029--1037",
   Month="Sep"
}

% 22286756

Evaluation and properties of the budding yeast phosphoproteome. Amoutzias, G. D.; He, Y.; Lilley, K. S.; Van de Peer, Y.; and Oliver, S. G. Mol Cell Proteomics, 11(6): M111.009555. Jun 2012.
link bibtex

@Article{pmid22286756,
   Author="Amoutzias, G. D.  and He, Y.  and Lilley, K. S.  and Van de Peer, Y.  and Oliver, S. G. ",
   Title="{{E}valuation and properties of the budding yeast phosphoproteome}",
   Journal="Mol Cell Proteomics",
   Year="2012",
   Volume="11",
   Number="6",
   Pages="M111.009555",
   Month="Jun"
}

% 22131889

MSnbase-an R/Bioconductor package for isobaric tagged mass spectrometry data visualization, processing and quantitation. Gatto, L.; and Lilley, K. S. Bioinformatics, 28(2): 288–289. Jan 2012.
link bibtex

@Article{pmid22113085,
   Author="Gatto, L.  and Lilley, K. S. ",
   Title="{{M}{S}nbase-an {R}/{B}ioconductor package for isobaric tagged mass spectrometry data visualization, processing and quantitation}",
   Journal="Bioinformatics",
   Year="2012",
   Volume="28",
   Number="2",
   Pages="288--289",
   Month="Jan"
}

% 22036744

2011 (11)

Uromodulin exclusion list improves urinary exosomal protein identification. Hiemstra, T. F.; Charles, P. D.; Hester, S. S.; Karet, F. E.; and Lilley, K. S. J Biomol Tech, 22(4): 136–145. Dec 2011.
link bibtex

@Article{pmid22131889,
   Author="Hiemstra, T. F.  and Charles, P. D.  and Hester, S. S.  and Karet, F. E.  and Lilley, K. S. ",
   Title="{{U}romodulin exclusion list improves urinary exosomal protein identification}",
   Journal="J Biomol Tech",
   Year="2011",
   Volume="22",
   Number="4",
   Pages="136--145",
   Month="Dec"
}

% 22113085

Taming the isobaric tagging elephant in the room in quantitative proteomics. Christoforou, A.; and Lilley, K. S. Nat Methods, 8(11): 911–913. Oct 2011.
link bibtex

@Article{pmid22036744,
   Author="Christoforou, A.  and Lilley, K. S. ",
   Title="{{T}aming the isobaric tagging elephant in the room in quantitative proteomics}",
   Journal="Nat Methods",
   Year="2011",
   Volume="8",
   Number="11",
   Pages="911--913",
   Month="Oct"
}

% 22017570

LC-MS/MS methods for absolute quantification and identification of proteins associated with chimeric plant oil bodies. Capuano, F.; Bond, N. J.; Gatto, L.; Beaudoin, F.; Napier, J. A.; Benvenuto, E.; Lilley, K. S.; and Baschieri, S. Anal Chem, 83(24): 9267–9272. Dec 2011.
link bibtex

@Article{pmid22017570,
   Author="Capuano, F.  and Bond, N. J.  and Gatto, L.  and Beaudoin, F.  and Napier, J. A.  and Benvenuto, E.  and Lilley, K. S.  and Baschieri, S. ",
   Title="{{L}{C}-{M}{S}/{M}{S} methods for absolute quantification and identification of proteins associated with chimeric plant oil bodies}",
   Journal="Anal Chem",
   Year="2011",
   Volume="83",
   Number="24",
   Pages="9267--9272",
   Month="Dec"
}

% 21722733

Method for suppressing non-specific protein interactions observed with affinity resins. Rees, J. S.; and Lilley, K. S. Methods, 54(4): 407–412. Aug 2011.
link bibtex

@Article{pmid21722733,
   Author="Rees, J. S.  and Lilley, K. S. ",
   Title="{{M}ethod for suppressing non-specific protein interactions observed with affinity resins}",
   Journal="Methods",
   Year="2011",
   Volume="54",
   Number="4",
   Pages="407--412",
   Month="Aug"
}

% 21455478

ABRF-PRG07: advanced quantitative proteomics study. Falick, A. M.; Lane, W. S.; Lilley, K. S.; MacCoss, M. J.; Phinney, B. S.; Sherman, N. E.; Weintraub, S. T.; Witkowska, H. E.; and Yates, N. A. J Biomol Tech, 22(1): 21–26. Apr 2011.
link bibtex

@Article{pmid21455478,
   Author="Falick, A. M.  and Lane, W. S.  and Lilley, K. S.  and MacCoss, M. J.  and Phinney, B. S.  and Sherman, N. E.  and Weintraub, S. T.  and Witkowska, H. E.  and Yates, N. A. ",
   Title="{{A}{B}{R}{F}-{P}{R}{G}07: advanced quantitative proteomics study}",
   Journal="J Biomol Tech",
   Year="2011",
   Volume="22",
   Number="1",
   Pages="21--26",
   Month="Apr"
}

% 21447707

In vivo analysis of proteomes and interactomes using Parallel Affinity Capture (iPAC) coupled to mass spectrometry. Rees, J. S.; Lowe, N.; Armean, I. M.; Roote, J.; Johnson, G.; Drummond, E.; Spriggs, H.; Ryder, E.; Russell, S.; St Johnston, D.; and Lilley, K. S. Mol Cell Proteomics, 10(6): M110.002386. Jun 2011.
link bibtex

@Article{pmid21447707,
   Author="Rees, J. S.  and Lowe, N.  and Armean, I. M.  and Roote, J.  and Johnson, G.  and Drummond, E.  and Spriggs, H.  and Ryder, E.  and Russell, S.  and St Johnston, D.  and Lilley, K. S. ",
   Title="{{I}n vivo analysis of proteomes and interactomes using {P}arallel {A}ffinity {C}apture (i{P}{A}{C}) coupled to mass spectrometry}",
   Journal="Mol Cell Proteomics",
   Year="2011",
   Volume="10",
   Number="6",
   Pages="M110.002386",
   Month="Jun"
}

% 21394914

The ABRF Proteomics Research Group studies: educational exercises for qualitative and quantitative proteomic analyses. Friedman, D. B.; Andacht, T. M.; Bunger, M. K.; Chien, A. S.; Hawke, D. H.; Krijgsveld, J.; Lane, W. S.; Lilley, K. S.; MacCoss, M. J.; Moritz, R. L.; Settlage, R. E.; Sherman, N. E.; Weintraub, S. T.; Witkowska, H. E.; Yates, N. A.; and Turck, C. W. Proteomics, 11(8): 1371–1381. Apr 2011.
link bibtex

@Article{pmid21394914,
   Author="Friedman, D. B.  and Andacht, T. M.  and Bunger, M. K.  and Chien, A. S.  and Hawke, D. H.  and Krijgsveld, J.  and Lane, W. S.  and Lilley, K. S.  and MacCoss, M. J.  and Moritz, R. L.  and Settlage, R. E.  and Sherman, N. E.  and Weintraub, S. T.  and Witkowska, H. E.  and Yates, N. A.  and Turck, C. W. ",
   Title="{{T}he {A}{B}{R}{F} {P}roteomics {R}esearch {G}roup studies: educational exercises for qualitative and quantitative proteomic analyses}",
   Journal="Proteomics",
   Year="2011",
   Volume="11",
   Number="8",
   Pages="1371--1381",
   Month="Apr"
}

% 21360676

Challenges for proteomics core facilities. Lilley, K. S.; Deery, M. J.; and Gatto, L. Proteomics, 11(6): 1017–1025. Mar 2011.
link bibtex

@Article{pmid21360676,
   Author="Lilley, K. S.  and Deery, M. J.  and Gatto, L. ",
   Title="{{C}hallenges for proteomics core facilities}",
   Journal="Proteomics",
   Year="2011",
   Volume="11",
   Number="6",
   Pages="1017--1025",
   Month="Mar"
}

% 21204916

Proteomics of cryoprotective dehydration in Megaphorura arctica Tullberg 1876 (Onychiuridae: Collembola). Thorne, M. A.; Worland, M. R.; Feret, R.; Deery, M. J.; Lilley, K. S.; and Clark, M. S. Insect Mol Biol, 20(3): 303–310. Jun 2011.
link bibtex

@Article{pmid21199019,
   Author="Thorne, M. A.  and Worland, M. R.  and Feret, R.  and Deery, M. J.  and Lilley, K. S.  and Clark, M. S. ",
   Title="{{P}roteomics of cryoprotective dehydration in {M}egaphorura arctica {T}ullberg 1876 ({O}nychiuridae: {C}ollembola)}",
   Journal="Insect Mol Biol",
   Year="2011",
   Volume="20",
   Number="3",
   Pages="303--310",
   Month="Jun"
}

% 21142888

Proteomic approaches to the characterization of protein thiol modification. Chouchani, E. T.; James, A. M.; Fearnley, I. M.; Lilley, K. S.; and Murphy, M. P. Curr Opin Chem Biol, 15(1): 120–128. Feb 2011.
link bibtex

@Article{pmid21130020,
   Author="Chouchani, E. T.  and James, A. M.  and Fearnley, I. M.  and Lilley, K. S.  and Murphy, M. P. ",
   Title="{{P}roteomic approaches to the characterization of protein thiol modification}",
   Journal="Curr Opin Chem Biol",
   Year="2011",
   Volume="15",
   Number="1",
   Pages="120--128",
   Month="Feb"
}

% 21080489

Two-dimensional differential in gel electrophoresis (2D-DIGE) analysis of grape berry proteome during postharvest withering. Di Carli, M.; Zamboni, A.; è, M. E.; Pezzotti, M.; Lilley, K. S.; Benvenuto, E.; and Desiderio, A. J Proteome Res, 10(2): 429–446. Feb 2011.
link bibtex

@Article{pmid20945943,
   Author="Di Carli, M.  and Zamboni, A.  and è, M. E.  and Pezzotti, M.  and Lilley, K. S.  and Benvenuto, E.  and Desiderio, A. ",
   Title="{{T}wo-dimensional differential in gel electrophoresis (2{D}-{D}{I}{G}{E}) analysis of grape berry proteome during postharvest withering}",
   Journal="J Proteome Res",
   Year="2011",
   Volume="10",
   Number="2",
   Pages="429--446",
   Month="Feb"
}

% 20836988

2010 (15)

Proteomic analysis of the adaptive responses of Pseudomonas aeruginosa to aminoglycoside antibiotics. Mikkelsen, H.; Swatton, J. E.; Lilley, K. S.; and Welch, M. FEMS Microbiol Lett. Aug 2010.
link bibtex

@Article{pmid21204916,
   Author="Mikkelsen, H.  and Swatton, J. E.  and Lilley, K. S.  and Welch, M. ",
   Title="{{P}roteomic analysis of the adaptive responses of {P}seudomonas aeruginosa to aminoglycoside antibiotics}",
   Journal="FEMS Microbiol Lett",
   Year="2010",
   Month="Aug"
}

% 21199019

Proteomics of total membranes and subcellular membranes. Groen, A. J.; and Lilley, K. S. Expert Rev Proteomics, 7(6): 867–878. Dec 2010.
link bibtex

@Article{pmid21142888,
   Author="Groen, A. J.  and Lilley, K. S. ",
   Title="{{P}roteomics of total membranes and subcellular membranes}",
   Journal="Expert Rev Proteomics",
   Year="2010",
   Volume="7",
   Number="6",
   Pages="867--878",
   Month="Dec"
}

% 21130020

Organelle proteomics experimental designs and analysis. Gatto, L.; no , J. A.; Hermjakob, H.; Huber, W.; and Lilley, K. S. Proteomics, 10(22): 3957–3969. Nov 2010.
link bibtex

@Article{pmid21080489,
   Author="Gatto, L.  and no, J. A.  and Hermjakob, H.  and Huber, W.  and Lilley, K. S. ",
   Title="{{O}rganelle proteomics experimental designs and analysis}",
   Journal="Proteomics",
   Year="2010",
   Volume="10",
   Number="22",
   Pages="3957--3969",
   Month="Nov"
}

% 21058340

Improved sub-cellular resolution via simultaneous analysis of organelle proteomics data across varied experimental conditions. Trotter, M. W.; Sadowski, P. G.; Dunkley, T. P.; Groen, A. J.; and Lilley, K. S. Proteomics, 10(23): 4213–4219. Dec 2010.
link bibtex

@Article{pmid21058340,
   Author="Trotter, M. W.  and Sadowski, P. G.  and Dunkley, T. P.  and Groen, A. J.  and Lilley, K. S. ",
   Title="{{I}mproved sub-cellular resolution via simultaneous analysis of organelle proteomics data across varied experimental conditions}",
   Journal="Proteomics",
   Year="2010",
   Volume="10",
   Number="23",
   Pages="4213--4219",
   Month="Dec"
}

% 20946641

Expression proteomics of UPF1 knockdown in HeLa cells reveals autoregulation of hnRNP A2/B1 mediated by alternative splicing resulting in nonsense-mediated mRNA decay. McGlincy, N. J.; Tan, L. Y.; Paul, N.; Zavolan, M.; Lilley, K. S.; and Smith, C. W. BMC Genomics, 11: 565. Oct 2010.
link bibtex

@Article{pmid20946641,
   Author="McGlincy, N. J.  and Tan, L. Y.  and Paul, N.  and Zavolan, M.  and Lilley, K. S.  and Smith, C. W. ",
   Title="{{E}xpression proteomics of {U}{P}{F}1 knockdown in {H}e{L}a cells reveals autoregulation of hn{R}{N}{P} {A}2/{B}1 mediated by alternative splicing resulting in nonsense-mediated m{R}{N}{A} decay}",
   Journal="BMC Genomics",
   Year="2010",
   Volume="11",
   Pages="565",
   Month="Oct"
}

% 20945943

Quantification and identification of mitochondrial proteins containing vicinal dithiols. Requejo, R.; Chouchani, E. T.; James, A. M.; Prime, T. A.; Lilley, K. S.; Fearnley, I. M.; and Murphy, M. P. Arch Biochem Biophys, 504(2): 228–235. Dec 2010.
link bibtex

@Article{pmid20836988,
   Author="Requejo, R.  and Chouchani, E. T.  and James, A. M.  and Prime, T. A.  and Lilley, K. S.  and Fearnley, I. M.  and Murphy, M. P. ",
   Title="{{Q}uantification and identification of mitochondrial proteins containing vicinal dithiols}",
   Journal="Arch Biochem Biophys",
   Year="2010",
   Volume="504",
   Number="2",
   Pages="228--235",
   Month="Dec"
}

% 20826702

Identification of putative stage-specific grapevine berry biomarkers and omics data integration into networks. Zamboni, A.; Di Carli, M.; Guzzo, F.; Stocchero, M.; Zenoni, S.; Ferrarini, A.; Tononi, P.; Toffali, K.; Desiderio, A.; Lilley, K. S.; è, M. E.; Benvenuto, E.; Delledonne, M.; and Pezzotti, M. Plant Physiol, 154(3): 1439–1459. Nov 2010.
link bibtex

@Article{pmid20826702,
   Author="Zamboni, A.  and Di Carli, M.  and Guzzo, F.  and Stocchero, M.  and Zenoni, S.  and Ferrarini, A.  and Tononi, P.  and Toffali, K.  and Desiderio, A.  and Lilley, K. S.  and è, M. E.  and Benvenuto, E.  and Delledonne, M.  and Pezzotti, M. ",
   Title="{{I}dentification of putative stage-specific grapevine berry biomarkers and omics data integration into networks}",
   Journal="Plant Physiol",
   Year="2010",
   Volume="154",
   Number="3",
   Pages="1439--1459",
   Month="Nov"
}

% 20694929

Proteomics for the food industry: opportunities and challenges. Pedreschi, R.; Hertog, M.; Lilley, K. S.; and ï, B. Crit Rev Food Sci Nutr, 50(7): 680–692. Aug 2010.
link bibtex

@Article{pmid20694929,
   Author="Pedreschi, R.  and Hertog, M.  and Lilley, K. S.  and ï, B. ",
   Title="{{P}roteomics for the food industry: opportunities and challenges}",
   Journal="Crit Rev Food Sci Nutr",
   Year="2010",
   Volume="50",
   Number="7",
   Pages="680--692",
   Month="Aug"
}

% 20658978

Proteomic complex detection using sedimentation (ProCoDeS): screening for proteins in stable complexes and their candidate interaction partners. Segura, M. P.; Lilley, K. S.; and Dupree, P. Biochem Soc Trans, 38(4): 923–927. Aug 2010.
link bibtex

@Article{pmid20658978,
   Author="Segura, M. P.  and Lilley, K. S.  and Dupree, P. ",
   Title="{{P}roteomic complex detection using sedimentation ({P}ro{C}o{D}e{S}): screening for proteins in stable complexes and their candidate interaction partners}",
   Journal="Biochem Soc Trans",
   Year="2010",
   Volume="38",
   Number="4",
   Pages="923--927",
   Month="Aug"
}

% 20569199

Genomic tagging reveals a random association of endogenous PtdIns5P 4-kinases IIalpha and IIbeta and a partial nuclear localization of the IIalpha isoform. Wang, M.; Bond, N. J.; Letcher, A. J.; Richardson, J. P.; Lilley, K. S.; Irvine, R. F.; and Clarke, J. H. Biochem J, 430(2): 215–221. Sep 2010.
link bibtex

@Article{pmid20569199,
   Author="Wang, M.  and Bond, N. J.  and Letcher, A. J.  and Richardson, J. P.  and Lilley, K. S.  and Irvine, R. F.  and Clarke, J. H. ",
   Title="{{G}enomic tagging reveals a random association of endogenous {P}td{I}ns5{P} 4-kinases {I}{I}alpha and {I}{I}beta and a partial nuclear localization of the {I}{I}alpha isoform}",
   Journal="Biochem J",
   Year="2010",
   Volume="430",
   Number="2",
   Pages="215--221",
   Month="Sep"
}

% 20533907

Identification of S-nitrosated mitochondrial proteins by S-nitrosothiol difference in gel electrophoresis (SNO-DIGE): implications for the regulation of mitochondrial function by reversible S-nitrosation. Chouchani, E. T.; Hurd, T. R.; Nadtochiy, S. M.; Brookes, P. S.; Fearnley, I. M.; Lilley, K. S.; Smith, R. A.; and Murphy, M. P. Biochem J, 430(1): 49–59. Aug 2010.
link bibtex

@Article{pmid20533907,
   Author="Chouchani, E. T.  and Hurd, T. R.  and Nadtochiy, S. M.  and Brookes, P. S.  and Fearnley, I. M.  and Lilley, K. S.  and Smith, R. A.  and Murphy, M. P. ",
   Title="{{I}dentification of {S}-nitrosated mitochondrial proteins by {S}-nitrosothiol difference in gel electrophoresis ({S}{N}{O}-{D}{I}{G}{E}): implications for the regulation of mitochondrial function by reversible {S}-nitrosation}",
   Journal="Biochem J",
   Year="2010",
   Volume="430",
   Number="1",
   Pages="49--59",
   Month="Aug"
}

% 20497545

Nutrient control of eukaryote cell growth: a systems biology study in yeast. Gutteridge, A.; Pir, P.; Castrillo, J. I.; Charles, P. D.; Lilley, K. S.; and Oliver, S. G. BMC Biol, 8: 68. May 2010.
link bibtex

@Article{pmid20497545,
   Author="Gutteridge, A.  and Pir, P.  and Castrillo, J. I.  and Charles, P. D.  and Lilley, K. S.  and Oliver, S. G. ",
   Title="{{N}utrient control of eukaryote cell growth: a systems biology study in yeast}",
   Journal="BMC Biol",
   Year="2010",
   Volume="8",
   Pages="68",
   Month="May"
}

% 20382981

Addressing accuracy and precision issues in iTRAQ quantitation. Karp, N. A.; Huber, W.; Sadowski, P. G.; Charles, P. D.; Hester, S. V.; and Lilley, K. S. Mol Cell Proteomics, 9(9): 1885–1897. Sep 2010.
link bibtex

@Article{pmid20382981,
   Author="Karp, N. A.  and Huber, W.  and Sadowski, P. G.  and Charles, P. D.  and Hester, S. V.  and Lilley, K. S. ",
   Title="{{A}ddressing accuracy and precision issues in i{T}{R}{A}{Q} quantitation}",
   Journal="Mol Cell Proteomics",
   Year="2010",
   Volume="9",
   Number="9",
   Pages="1885--1897",
   Month="Sep"
}

% 20373734

Mutation of nfxB causes global changes in the physiology and metabolism of Pseudomonas aeruginosa. Stickland, H. G.; Davenport, P. W.; Lilley, K. S.; Griffin, J. L.; and Welch, M. J Proteome Res, 9(6): 2957–2967. Jun 2010.
link bibtex

@Article{pmid20373734,
   Author="Stickland, H. G.  and Davenport, P. W.  and Lilley, K. S.  and Griffin, J. L.  and Welch, M. ",
   Title="{{M}utation of nfx{B} causes global changes in the physiology and metabolism of {P}seudomonas aeruginosa}",
   Journal="J Proteome Res",
   Year="2010",
   Volume="9",
   Number="6",
   Pages="2957--2967",
   Month="Jun"
}

% 20056700

Mutations in rpsL that confer streptomycin resistance show pleiotropic effects on virulence and the production of a carbapenem antibiotic in Erwinia carotovora. Barnard, A. M. L.; Simpson, N. J. L.; Lilley, K. S.; and Salmond, G. P. C. Microbiology (Reading), 156(Pt 4): 1030–1039. Apr 2010.
link bibtex

@Article{pmid20056700,
   Author="Barnard, A. M. L.  and Simpson, N. J. L.  and Lilley, K. S.  and Salmond, G. P. C. ",
   Title="{{M}utations in rps{L} that confer streptomycin resistance show pleiotropic effects on virulence and the production of a carbapenem antibiotic in {E}rwinia carotovora}",
   Journal="Microbiology (Reading)",
   Year="2010",
   Volume="156",
   Number="Pt 4",
   Pages="1030--1039",
   Month="Apr"
}

% 19913422

2009 (10)

Proteomic analysis reveals the role of synaptic vesicle cycling in sustaining the suprachiasmatic circadian clock. Deery, M. J.; Maywood, E. S.; Chesham, J. E.; dek , M.; Karp, N. A.; Green, E. W.; Charles, P. D.; Reddy, A. B.; Kyriacou, C. P.; Lilley, K. S.; and Hastings, M. H. Curr Biol, 19(23): 2031–2036. Dec 2009.
link bibtex

@Article{pmid19913422,
   Author="Deery, M. J.  and Maywood, E. S.  and Chesham, J. E.  and dek, M.  and Karp, N. A.  and Green, E. W.  and Charles, P. D.  and Reddy, A. B.  and Kyriacou, C. P.  and Lilley, K. S.  and Hastings, M. H. ",
   Title="{{P}roteomic analysis reveals the role of synaptic vesicle cycling in sustaining the suprachiasmatic circadian clock}",
   Journal="Curr Biol",
   Year="2009",
   Volume="19",
   Number="23",
   Pages="2031--2036",
   Month="Dec"
}

% 19722581

Gel-based proteomics approach to the study of metabolic changes in pear tissue during storage. Pedreschi, R.; Hertog, M.; Robben, J.; Lilley, K. S.; Karp, N. A.; Baggerman, G.; Vanderleyden, J.; and ï, B. J Agric Food Chem, 57(15): 6997–7004. Aug 2009.
link bibtex

@Article{pmid19722581,
   Author="Pedreschi, R.  and Hertog, M.  and Robben, J.  and Lilley, K. S.  and Karp, N. A.  and Baggerman, G.  and Vanderleyden, J.  and ï, B. ",
   Title="{{G}el-based proteomics approach to the study of metabolic changes in pear tissue during storage}",
   Journal="J Agric Food Chem",
   Year="2009",
   Volume="57",
   Number="15",
   Pages="6997--7004",
   Month="Aug"
}

% 19631203

Drosophila Larp associates with poly(A)-binding protein and is required for male fertility and syncytial embryo development. Blagden, S. P.; Gatt, M. K.; Archambault, V.; Lada, K.; Ichihara, K.; Lilley, K. S.; Inoue, Y. H.; and Glover, D. M. Dev Biol, 334(1): 186–197. Oct 2009.
link bibtex

@Article{pmid19631203,
   Author="Blagden, S. P.  and Gatt, M. K.  and Archambault, V.  and Lada, K.  and Ichihara, K.  and Lilley, K. S.  and Inoue, Y. H.  and Glover, D. M. ",
   Title="{{D}rosophila {L}arp associates with poly({A})-binding protein and is required for male fertility and syncytial embryo development}",
   Journal="Dev Biol",
   Year="2009",
   Volume="334",
   Number="1",
   Pages="186--197",
   Month="Oct"
}

% 19348898

Chapter 19 Measuring redox changes to mitochondrial protein thiols with redox difference gel electrophoresis (redox-DIGE). Hurd, T. R.; James, A. M.; Lilley, K. S.; and Murphy, M. P. Methods Enzymol, 456: 343–361. 2009.
link bibtex

@Article{pmid19348898,
   Author="Hurd, T. R.  and James, A. M.  and Lilley, K. S.  and Murphy, M. P. ",
   Title="{{C}hapter 19 {M}easuring redox changes to mitochondrial protein thiols with redox difference gel electrophoresis (redox-{D}{I}{G}{E})}",
   Journal="Methods Enzymol",
   Year="2009",
   Volume="456",
   Pages="343--361"
}

% 19317464

Mapping organelle proteins and protein complexes in Drosophila melanogaster. Tan, D. J.; Dvinge, H.; Christoforou, A.; Bertone, P.; Martinez Arias, A.; and Lilley, K. S. J Proteome Res, 8(6): 2667–2678. Jun 2009.
link bibtex

@Article{pmid19317464,
   Author="Tan, D. J.  and Dvinge, H.  and Christoforou, A.  and Bertone, P.  and Martinez Arias, A.  and Lilley, K. S. ",
   Title="{{M}apping organelle proteins and protein complexes in {D}rosophila melanogaster}",
   Journal="J Proteome Res",
   Year="2009",
   Volume="8",
   Number="6",
   Pages="2667--2678",
   Month="Jun"
}

% 19246740

Biofilms and type III secretion are not mutually exclusive in Pseudomonas aeruginosa. Mikkelsen, H.; Bond, N. J.; Skindersoe, M. E.; Givskov, M.; Lilley, K. S.; and Welch, M. Microbiology (Reading), 155(Pt 3): 687–698. Mar 2009.
link bibtex

@Article{pmid19246740,
   Author="Mikkelsen, H.  and Bond, N. J.  and Skindersoe, M. E.  and Givskov, M.  and Lilley, K. S.  and Welch, M. ",
   Title="{{B}iofilms and type {I}{I}{I} secretion are not mutually exclusive in {P}seudomonas aeruginosa}",
   Journal="Microbiology (Reading)",
   Year="2009",
   Volume="155",
   Number="Pt 3",
   Pages="687--698",
   Month="Mar"
}

% 19181659

The organelle proteome of the DT40 lymphocyte cell line. Hall, S. L.; Hester, S.; Griffin, J. L.; Lilley, K. S.; and Jackson, A. P. Mol Cell Proteomics, 8(6): 1295–1305. Jun 2009.
link bibtex

@Article{pmid19181659,
   Author="Hall, S. L.  and Hester, S.  and Griffin, J. L.  and Lilley, K. S.  and Jackson, A. P. ",
   Title="{{T}he organelle proteome of the {D}{T}40 lymphocyte cell line}",
   Journal="Mol Cell Proteomics",
   Year="2009",
   Volume="8",
   Number="6",
   Pages="1295--1305",
   Month="Jun"
}

% 19124776

The phage abortive infection system, ToxIN, functions as a protein-RNA toxin-antitoxin pair. Fineran, P. C.; Blower, T. R.; Foulds, I. J.; Humphreys, D. P.; Lilley, K. S.; and Salmond, G. P. Proc Natl Acad Sci U S A, 106(3): 894–899. Jan 2009.
link bibtex

@Article{pmid19124776,
   Author="Fineran, P. C.  and Blower, T. R.  and Foulds, I. J.  and Humphreys, D. P.  and Lilley, K. S.  and Salmond, G. P. ",
   Title="{{T}he phage abortive infection system, {T}ox{I}{N}, functions as a protein-{R}{N}{A} toxin-antitoxin pair}",
   Journal="Proc Natl Acad Sci U S A",
   Year="2009",
   Volume="106",
   Number="3",
   Pages="894--899",
   Month="Jan"
}

% 19105178

Investigating sample pooling strategies for DIGE experiments to address biological variability. Karp, N. A.; and Lilley, K. S. Proteomics, 9(2): 388–397. Jan 2009.
link bibtex

@Article{pmid19105178,
   Author="Karp, N. A.  and Lilley, K. S. ",
   Title="{{I}nvestigating sample pooling strategies for {D}{I}{G}{E} experiments to address biological variability}",
   Journal="Proteomics",
   Year="2009",
   Volume="9",
   Number="2",
   Pages="388--397",
   Month="Jan"
}

% 19011259

MRMaid, the web-based tool for designing multiple reaction monitoring (MRM) transitions. Mead, J. A.; Bianco, L.; Ottone, V.; Barton, C.; Kay, R. G.; Lilley, K. S.; Bond, N. J.; and Bessant, C. Mol Cell Proteomics, 8(4): 696–705. Apr 2009.
link bibtex

@Article{pmid19011259,
   Author="Mead, J. A.  and Bianco, L.  and Ottone, V.  and Barton, C.  and Kay, R. G.  and Lilley, K. S.  and Bond, N. J.  and Bessant, C. ",
   Title="{{M}{R}{M}aid, the web-based tool for designing multiple reaction monitoring ({M}{R}{M}) transitions}",
   Journal="Mol Cell Proteomics",
   Year="2009",
   Volume="8",
   Number="4",
   Pages="696--705",
   Month="Apr"
}

% 18832073

2008 (14)

Sequestration of Polo kinase to microtubules by phosphopriming-independent binding to Map205 is relieved by phosphorylation at a CDK site in mitosis. Archambault, V.; D'Avino, P. P.; Deery, M. J.; Lilley, K. S.; and Glover, D. M. Genes Dev, 22(19): 2707–2720. Oct 2008.
link bibtex

@Article{pmid18832073,
   Author="Archambault, V.  and D'Avino, P. P.  and Deery, M. J.  and Lilley, K. S.  and Glover, D. M. ",
   Title="{{S}equestration of {P}olo kinase to microtubules by phosphopriming-independent binding to {M}ap205 is relieved by phosphorylation at a {C}{D}{K} site in mitosis}",
   Journal="Genes Dev",
   Year="2008",
   Volume="22",
   Number="19",
   Pages="2707--2720",
   Month="Oct"
}

% 18780351

Sub-cellular localization of membrane proteins. Sadowski, P. G.; Groen, A. J.; Dupree, P.; and Lilley, K. S. Proteomics, 8(19): 3991–4011. Oct 2008.
link bibtex

@Article{pmid18780351,
   Author="Sadowski, P. G.  and Groen, A. J.  and Dupree, P.  and Lilley, K. S. ",
   Title="{{S}ub-cellular localization of membrane proteins}",
   Journal="Proteomics",
   Year="2008",
   Volume="8",
   Number="19",
   Pages="3991--4011",
   Month="Oct"
}

% 18688234

Guidelines for reporting the use of gel electrophoresis in proteomics. Gibson, F.; Anderson, L.; Babnigg, G.; Baker, M.; Berth, M.; Binz, P. A.; Borthwick, A.; Cash, P.; Day, B. W.; Friedman, D. B.; Garland, D.; Gutstein, H. B.; Hoogland, C.; Jones, N. A.; Khan, A.; Klose, J.; Lamond, A. I.; Lemkin, P. F.; Lilley, K. S.; Minden, J.; Morris, N. J.; Paton, N. W.; Pisano, M. R.; Prime, J. E.; Rabilloud, T.; Stead, D. A.; Taylor, C. F.; Voshol, H.; Wipat, A.; and Jones, A. R. Nat Biotechnol, 26(8): 863–864. Aug 2008.
link bibtex

@Article{pmid18688234,
   Author="Gibson, F.  and Anderson, L.  and Babnigg, G.  and Baker, M.  and Berth, M.  and Binz, P. A.  and Borthwick, A.  and Cash, P.  and Day, B. W.  and Friedman, D. B.  and Garland, D.  and Gutstein, H. B.  and Hoogland, C.  and Jones, N. A.  and Khan, A.  and Klose, J.  and Lamond, A. I.  and Lemkin, P. F.  and Lilley, K. S.  and Minden, J.  and Morris, N. J.  and Paton, N. W.  and Pisano, M. R.  and Prime, J. E.  and Rabilloud, T.  and Stead, D. A.  and Taylor, C. F.  and Voshol, H.  and Wipat, A.  and Jones, A. R. ",
   Title="{{G}uidelines for reporting the use of gel electrophoresis in proteomics}",
   Journal="Nat Biotechnol",
   Year="2008",
   Volume="26",
   Number="8",
   Pages="863--864",
   Month="Aug"
}

% 18678750

A proteomics approach to membrane trafficking. Groen, A. J.; de Vries, S. C.; and Lilley, K. S. Plant Physiol, 147(4): 1584–1589. Aug 2008.
link bibtex

@Article{pmid18678750,
   Author="Groen, A. J.  and de Vries, S. C.  and Lilley, K. S. ",
   Title="{{A} proteomics approach to membrane trafficking}",
   Journal="Plant Physiol",
   Year="2008",
   Volume="147",
   Number="4",
   Pages="1584--1589",
   Month="Aug"
}

% 18562317

DsbA plays a critical and multifaceted role in the production of secreted virulence factors by the phytopathogen Erwinia carotovora subsp. atroseptica. Coulthurst, S. J.; Lilley, K. S.; Hedley, P. E.; Liu, H.; Toth, I. K.; and Salmond, G. P. J Biol Chem, 283(35): 23739–23753. Aug 2008.
link bibtex

@Article{pmid18562317,
   Author="Coulthurst, S. J.  and Lilley, K. S.  and Hedley, P. E.  and Liu, H.  and Toth, I. K.  and Salmond, G. P. ",
   Title="{{D}sb{A} plays a critical and multifaceted role in the production of secreted virulence factors by the phytopathogen {E}rwinia carotovora subsp. atroseptica}",
   Journal="J Biol Chem",
   Year="2008",
   Volume="283",
   Number="35",
   Pages="23739--23753",
   Month="Aug"
}

% 18429243

A combined metabolomic and proteomic investigation of the effects of a failure to express dystrophin in the mouse heart. Gulston, M. K.; Rubtsov, D. V.; Atherton, H. J.; Clarke, K.; Davies, K. E.; Lilley, K. S.; and Griffin, J. L. J Proteome Res, 7(5): 2069–2077. May 2008.
link bibtex

@Article{pmid18386883,
   Author="Gulston, M. K.  and Rubtsov, D. V.  and Atherton, H. J.  and Clarke, K.  and Davies, K. E.  and Lilley, K. S.  and Griffin, J. L. ",
   Title="{{A} combined metabolomic and proteomic investigation of the effects of a failure to express dystrophin in the mouse heart}",
   Journal="J Proteome Res",
   Year="2008",
   Volume="7",
   Number="5",
   Pages="2069--2077",
   Month="May"
}

% 18370031

Determination of genuine residents of plant endomembrane organelles using isotope tagging and multivariate statistics. Lilley, K. S.; and Dunkley, T. P. Methods Mol Biol, 432: 373–387. 2008.
link bibtex

@Article{pmid18370031,
   Author="Lilley, K. S.  and Dunkley, T. P. ",
   Title="{{D}etermination of genuine residents of plant endomembrane organelles using isotope tagging and multivariate statistics}",
   Journal="Methods Mol Biol",
   Year="2008",
   Volume="432",
   Pages="373--387"
}

% 18369897

Isolation and preparation of chloroplasts from Arabidopsis thaliana plants. Kubis, S. E.; Lilley, K. S.; and Jarvis, P. Methods Mol Biol, 425: 171–186. 2008.
link bibtex

@Article{pmid18369897,
   Author="Kubis, S. E.  and Lilley, K. S.  and Jarvis, P. ",
   Title="{{I}solation and preparation of chloroplasts from {A}rabidopsis thaliana plants}",
   Journal="Methods Mol Biol",
   Year="2008",
   Volume="425",
   Pages="171--186"
}

% 18349071

Interaction between Anillin and RacGAP50C connects the actomyosin contractile ring with spindle microtubules at the cell division site. D'Avino, P. P.; Takeda, T.; Capalbo, L.; Zhang, W.; Lilley, K. S.; Laue, E. D.; and Glover, D. M. J Cell Sci, 121(Pt 8): 1151–1158. Apr 2008.
link bibtex

@Article{pmid18349071,
   Author="D'Avino, P. P.  and Takeda, T.  and Capalbo, L.  and Zhang, W.  and Lilley, K. S.  and Laue, E. D.  and Glover, D. M. ",
   Title="{{I}nteraction between {A}nillin and {R}ac{G}{A}{P}50{C} connects the actomyosin contractile ring with spindle microtubules at the cell division site}",
   Journal="J Cell Sci",
   Year="2008",
   Volume="121",
   Number="Pt 8",
   Pages="1151--1158",
   Month="Apr"
}

% 18346272

Proteomic analysis of the EhV-86 virion. Allen, M. J.; Howard, J. A.; Lilley, K. S.; and Wilson, W. H. Proteome Sci, 6: 11. Mar 2008.
link bibtex

@Article{pmid18346272,
   Author="Allen, M. J.  and Howard, J. A.  and Lilley, K. S.  and Wilson, W. H. ",
   Title="{{P}roteomic analysis of the {E}h{V}-86 virion}",
   Journal="Proteome Sci",
   Year="2008",
   Volume="6",
   Pages="11",
   Month="Mar"
}

% 18324730

Identification by 2-D DIGE of apoplastic proteins regulated by oligogalacturonides in Arabidopsis thaliana. Casasoli, M.; Spadoni, S.; Lilley, K. S.; Cervone, F.; De Lorenzo, G.; and Mattei, B. Proteomics, 8(5): 1042–1054. Mar 2008.
link bibtex

@Article{pmid18324730,
   Author="Casasoli, M.  and Spadoni, S.  and Lilley, K. S.  and Cervone, F.  and De Lorenzo, G.  and Mattei, B. ",
   Title="{{I}dentification by 2-{D} {D}{I}{G}{E} of apoplastic proteins regulated by oligogalacturonides in {A}rabidopsis thaliana}",
   Journal="Proteomics",
   Year="2008",
   Volume="8",
   Number="5",
   Pages="1042--1054",
   Month="Mar"
}

% 18287770

Optimizing the difference gel electrophoresis (DIGE) technology. Friedman, D. B.; and Lilley, K. S. Methods Mol Biol, 428: 93–124. 2008.
link bibtex

@Article{pmid18287770,
   Author="Friedman, D. B.  and Lilley, K. S. ",
   Title="{{O}ptimizing the difference gel electrophoresis ({D}{I}{G}{E}) technology}",
   Journal="Methods Mol Biol",
   Year="2008",
   Volume="428",
   Pages="93--124"
}

% 18246571

Comparison of DIGE and post-stained gel electrophoresis with both traditional and SameSpots analysis for quantitative proteomics. Karp, N. A.; Feret, R.; Rubtsov, D. V.; and Lilley, K. S. Proteomics, 8(5): 948–960. Mar 2008.
link bibtex

@Article{pmid18246571,
   Author="Karp, N. A.  and Feret, R.  and Rubtsov, D. V.  and Lilley, K. S. ",
   Title="{{C}omparison of {D}{I}{G}{E} and post-stained gel electrophoresis with both traditional and {S}ame{S}pots analysis for quantitative proteomics}",
   Journal="Proteomics",
   Year="2008",
   Volume="8",
   Number="5",
   Pages="948--960",
   Month="Mar"
}

% 17967896

Identification of internal ribosome entry segment (IRES)-trans-acting factors for the Myc family of IRESs. Cobbold, L. C.; Spriggs, K. A.; Haines, S. J.; Dobbyn, H. C.; Hayes, C.; de Moor, C. H.; Lilley, K. S.; Bushell, M.; and Willis, A. E. Mol Cell Biol, 28(1): 40–49. Jan 2008.
link bibtex

@Article{pmid17967896,
   Author="Cobbold, L. C.  and Spriggs, K. A.  and Haines, S. J.  and Dobbyn, H. C.  and Hayes, C.  and de Moor, C. H.  and Lilley, K. S.  and Bushell, M.  and Willis, A. E. ",
   Title="{{I}dentification of internal ribosome entry segment ({I}{R}{E}{S})-trans-acting factors for the {M}yc family of {I}{R}{E}{S}s}",
   Journal="Mol Cell Biol",
   Year="2008",
   Volume="28",
   Number="1",
   Pages="40--49",
   Month="Jan"
}

% 17913569

2007 (15)

Plant organelle proteomics. Lilley, K. S.; and Dupree, P. Curr Opin Plant Biol, 10(6): 594–599. Dec 2007.
link bibtex

@Article{pmid17913569,
   Author="Lilley, K. S.  and Dupree, P. ",
   Title="{{P}lant organelle proteomics}",
   Journal="Curr Opin Plant Biol",
   Year="2007",
   Volume="10",
   Number="6",
   Pages="594--599",
   Month="Dec"
}

% 17893850

Design and analysis issues in quantitative proteomics studies. Karp, N. A.; and Lilley, K. S. Proteomics, 7 Suppl 1: 42–50. Sep 2007.
link bibtex

@Article{pmid17893850,
   Author="Karp, N. A.  and Lilley, K. S. ",
   Title="{{D}esign and analysis issues in quantitative proteomics studies}",
   Journal="Proteomics",
   Year="2007",
   Volume="7 Suppl 1",
   Pages="42--50",
   Month="Sep"
}

% 17766413

Virulence and prodigiosin antibiotic biosynthesis in Serratia are regulated pleiotropically by the GGDEF/EAL domain protein, PigX. Fineran, P. C.; Williamson, N. R.; Lilley, K. S.; and Salmond, G. P. J Bacteriol, 189(21): 7653–7662. Nov 2007.
link bibtex

@Article{pmid17766413,
   Author="Fineran, P. C.  and Williamson, N. R.  and Lilley, K. S.  and Salmond, G. P. ",
   Title="{{V}irulence and prodigiosin antibiotic biosynthesis in {S}erratia are regulated pleiotropically by the {G}{G}{D}{E}{F}/{E}{A}{L} domain protein, {P}ig{X}}",
   Journal="J Bacteriol",
   Year="2007",
   Volume="189",
   Number="21",
   Pages="7653--7662",
   Month="Nov"
}

% 17687369

The minimum information about a proteomics experiment (MIAPE). Taylor, C. F.; Paton, N. W.; Lilley, K. S.; Binz, P. A.; Julian, R. K.; Jones, A. R.; Zhu, W.; Apweiler, R.; Aebersold, R.; Deutsch, E. W.; Dunn, M. J.; Heck, A. J.; Leitner, A.; Macht, M.; Mann, M.; Martens, L.; Neubert, T. A.; Patterson, S. D.; Ping, P.; Seymour, S. L.; Souda, P.; Tsugita, A.; Vandekerckhove, J.; Vondriska, T. M.; Whitelegge, J. P.; Wilkins, M. R.; Xenarios, I.; Yates, J. R.; and Hermjakob, H. Nat Biotechnol, 25(8): 887–893. Aug 2007.
link bibtex

@Article{pmid17687369,
   Author="Taylor, C. F.  and Paton, N. W.  and Lilley, K. S.  and Binz, P. A.  and Julian, R. K.  and Jones, A. R.  and Zhu, W.  and Apweiler, R.  and Aebersold, R.  and Deutsch, E. W.  and Dunn, M. J.  and Heck, A. J.  and Leitner, A.  and Macht, M.  and Mann, M.  and Martens, L.  and Neubert, T. A.  and Patterson, S. D.  and Ping, P.  and Seymour, S. L.  and Souda, P.  and Tsugita, A.  and Vandekerckhove, J.  and Vondriska, T. M.  and Whitelegge, J. P.  and Wilkins, M. R.  and Xenarios, I.  and Yates, J. R.  and Hermjakob, H. ",
   Title="{{T}he minimum information about a proteomics experiment ({M}{I}{A}{P}{E})}",
   Journal="Nat Biotechnol",
   Year="2007",
   Volume="25",
   Number="8",
   Pages="887--893",
   Month="Aug"
}

% 17593971

Recruitment of Polo kinase to the spindle midzone during cytokinesis requires the Feo/Klp3A complex. D'Avino, P. P.; Archambault, V.; Przewloka, M. R.; Zhang, W.; Lilley, K. S.; Laue, E.; and Glover, D. M. PLoS One, 2(6): e572. Jun 2007.
link bibtex

@Article{pmid17593971,
   Author="D'Avino, P. P.  and Archambault, V.  and Przewloka, M. R.  and Zhang, W.  and Lilley, K. S.  and Laue, E.  and Glover, D. M. ",
   Title="{{R}ecruitment of {P}olo kinase to the spindle midzone during cytokinesis requires the {F}eo/{K}lp3{A} complex}",
   Journal="PLoS One",
   Year="2007",
   Volume="2",
   Number="6",
   Pages="e572",
   Month="Jun"
}

% 17538967

Glucocorticoid signaling synchronizes the liver circadian transcriptome. Reddy, A. B.; Maywood, E. S.; Karp, N. A.; King, V. M.; Inoue, Y.; Gonzalez, F. J.; Lilley, K. S.; Kyriacou, C. P.; and Hastings, M. H. Hepatology, 45(6): 1478–1488. Jun 2007.
link bibtex

@Article{pmid17538967,
   Author="Reddy, A. B.  and Maywood, E. S.  and Karp, N. A.  and King, V. M.  and Inoue, Y.  and Gonzalez, F. J.  and Lilley, K. S.  and Kyriacou, C. P.  and Hastings, M. H. ",
   Title="{{G}lucocorticoid signaling synchronizes the liver circadian transcriptome}",
   Journal="Hepatology",
   Year="2007",
   Volume="45",
   Number="6",
   Pages="1478--1488",
   Month="Jun"
}

% 17534428

Molecular analysis of core kinetochore composition and assembly in Drosophila melanogaster. Przewloka, M. R.; Zhang, W.; Costa, P.; Archambault, V.; D'Avino, P. P.; Lilley, K. S.; Laue, E. D.; McAinsh, A. D.; and Glover, D. M. PLoS One, 2(5): e478. May 2007.
link bibtex

@Article{pmid17534428,
   Author="Przewloka, M. R.  and Zhang, W.  and Costa, P.  and Archambault, V.  and D'Avino, P. P.  and Lilley, K. S.  and Laue, E. D.  and McAinsh, A. D.  and Glover, D. M. ",
   Title="{{M}olecular analysis of core kinetochore composition and assembly in {D}rosophila melanogaster}",
   Journal="PLoS One",
   Year="2007",
   Volume="2",
   Number="5",
   Pages="e478",
   Month="May"
}

% 17525152

Detection of reactive oxygen species-sensitive thiol proteins by redox difference gel electrophoresis: implications for mitochondrial redox signaling. Hurd, T. R.; Prime, T. A.; Harbour, M. E.; Lilley, K. S.; and Murphy, M. P. J Biol Chem, 282(30): 22040–22051. Jul 2007.
link bibtex

@Article{pmid17525152,
   Author="Hurd, T. R.  and Prime, T. A.  and Harbour, M. E.  and Lilley, K. S.  and Murphy, M. P. ",
   Title="{{D}etection of reactive oxygen species-sensitive thiol proteins by redox difference gel electrophoresis: implications for mitochondrial redox signaling}",
   Journal="J Biol Chem",
   Year="2007",
   Volume="282",
   Number="30",
   Pages="22040--22051",
   Month="Jul"
}

% 17513294

The Association of Biomolecular Resource Facilities Proteomics Research Group 2006 study: relative protein quantitation. Turck, C. W.; Falick, A. M.; Kowalak, J. A.; Lane, W. S.; Lilley, K. S.; Phinney, B. S.; Weintraub, S. T.; Witkowska, H. E.; and Yates, N. A. Mol Cell Proteomics, 6(8): 1291–1298. Aug 2007.
link bibtex

@Article{pmid17513294,
   Author="Turck, C. W.  and Falick, A. M.  and Kowalak, J. A.  and Lane, W. S.  and Lilley, K. S.  and Phinney, B. S.  and Weintraub, S. T.  and Witkowska, H. E.  and Yates, N. A. ",
   Title="{{T}he {A}ssociation of {B}iomolecular {R}esource {F}acilities {P}roteomics {R}esearch {G}roup 2006 study: relative protein quantitation}",
   Journal="Mol Cell Proteomics",
   Year="2007",
   Volume="6",
   Number="8",
   Pages="1291--1298",
   Month="Aug"
}

% 17513293

Experimental and statistical considerations to avoid false conclusions in proteomics studies using differential in-gel electrophoresis. Karp, N. A.; McCormick, P. S.; Russell, M. R.; and Lilley, K. S. Mol Cell Proteomics, 6(8): 1354–1364. Aug 2007.
link bibtex

@Article{pmid17513293,
   Author="Karp, N. A.  and McCormick, P. S.  and Russell, M. R.  and Lilley, K. S. ",
   Title="{{E}xperimental and statistical considerations to avoid false conclusions in proteomics studies using differential in-gel electrophoresis}",
   Journal="Mol Cell Proteomics",
   Year="2007",
   Volume="6",
   Number="8",
   Pages="1354--1364",
   Month="Aug"
}

% 17487160

Growth control of the eukaryote cell: a systems biology study in yeast. Castrillo, J. I.; Zeef, L. A.; Hoyle, D. C.; Zhang, N.; Hayes, A.; Gardner, D. C.; Cornell, M. J.; Petty, J.; Hakes, L.; Wardleworth, L.; Rash, B.; Brown, M.; Dunn, W. B.; Broadhurst, D.; O'Donoghue, K.; Hester, S. S.; Dunkley, T. P.; Hart, S. R.; Swainston, N.; Li, P.; Gaskell, S. J.; Paton, N. W.; Lilley, K. S.; Kell, D. B.; and Oliver, S. G. J Biol, 6(2): 4. 2007.
link bibtex

@Article{pmid17439666,
   Author="Castrillo, J. I.  and Zeef, L. A.  and Hoyle, D. C.  and Zhang, N.  and Hayes, A.  and Gardner, D. C.  and Cornell, M. J.  and Petty, J.  and Hakes, L.  and Wardleworth, L.  and Rash, B.  and Brown, M.  and Dunn, W. B.  and Broadhurst, D.  and O'Donoghue, K.  and Hester, S. S.  and Dunkley, T. P.  and Hart, S. R.  and Swainston, N.  and Li, P.  and Gaskell, S. J.  and Paton, N. W.  and Lilley, K. S.  and Kell, D. B.  and Oliver, S. G. ",
   Title="{{G}rowth control of the eukaryote cell: a systems biology study in yeast}",
   Journal="J Biol",
   Year="2007",
   Volume="6",
   Number="2",
   Pages="4"
}

% 17417015

Identification of clock genes using difference gel electrophoresis. Karp, N. A.; and Lilley, K. S. Methods Mol Biol, 362: 265–287. 2007.
link bibtex

@Article{pmid17417015,
   Author="Karp, N. A.  and Lilley, K. S. ",
   Title="{{I}dentification of clock genes using difference gel electrophoresis}",
   Journal="Methods Mol Biol",
   Year="2007",
   Volume="362",
   Pages="265--287"
}

% 17326601

Proteomic complex detection using sedimentation. Hartman, N. T.; Sicilia, F.; Lilley, K. S.; and Dupree, P. Anal Chem, 79(5): 2078–2083. Mar 2007.
link bibtex

@Article{pmid17326601,
   Author="Hartman, N. T.  and Sicilia, F.  and Lilley, K. S.  and Dupree, P. ",
   Title="{{P}roteomic complex detection using sedimentation}",
   Journal="Anal Chem",
   Year="2007",
   Volume="79",
   Number="5",
   Pages="2078--2083",
   Month="Mar"
}

% 17220232

Interrelationships between colonies, biofilms, and planktonic cells of Pseudomonas aeruginosa. Mikkelsen, H.; Duck, Z.; Lilley, K. S.; and Welch, M. J Bacteriol, 189(6): 2411–2416. Mar 2007.
link bibtex

@Article{pmid17220232,
   Author="Mikkelsen, H.  and Duck, Z.  and Lilley, K. S.  and Welch, M. ",
   Title="{{I}nterrelationships between colonies, biofilms, and planktonic cells of {P}seudomonas aeruginosa}",
   Journal="J Bacteriol",
   Year="2007",
   Volume="189",
   Number="6",
   Pages="2411--2416",
   Month="Mar"
}

% 17116749

Comparative proteomic analysis reveals differential expression of Hsp25 following the directed differentiation of mouse embryonic stem cells. Battersby, A.; Jones, R. D.; Lilley, K. S.; McFarlane, R. J.; Braig, H. R.; Allen, N. D.; and Wakeman, J. A. Biochim Biophys Acta, 1773(2): 147–156. Feb 2007.
link bibtex

@Article{pmid17030443,
   Author="Battersby, A.  and Jones, R. D.  and Lilley, K. S.  and McFarlane, R. J.  and Braig, H. R.  and Allen, N. D.  and Wakeman, J. A. ",
   Title="{{C}omparative proteomic analysis reveals differential expression of {H}sp25 following the directed differentiation of mouse embryonic stem cells}",
   Journal="Biochim Biophys Acta",
   Year="2007",
   Volume="1773",
   Number="2",
   Pages="147--156",
   Month="Feb"
}

% 24980539

2006 (12)

Quantitative proteomic approach to study subcellular localization of membrane proteins. Sadowski, P. G.; Dunkley, T. P.; Shadforth, I. P.; Dupree, P.; Bessant, C.; Griffin, J. L.; and Lilley, K. S. Nat Protoc, 1(4): 1778–1789. 2006.
link bibtex

@Article{pmid17487160,
   Author="Sadowski, P. G.  and Dunkley, T. P.  and Shadforth, I. P.  and Dupree, P.  and Bessant, C.  and Griffin, J. L.  and Lilley, K. S. ",
   Title="{{Q}uantitative proteomic approach to study subcellular localization of membrane proteins}",
   Journal="Nat Protoc",
   Year="2006",
   Volume="1",
   Number="4",
   Pages="1778--1789"
}

% 17439666

Comparative proteomics of clathrin-coated vesicles. Borner, G. H.; Harbour, M.; Hester, S.; Lilley, K. S.; and Robinson, M. S. J Cell Biol, 175(4): 571–578. Nov 2006.
link bibtex

@Article{pmid17116749,
   Author="Borner, G. H.  and Harbour, M.  and Hester, S.  and Lilley, K. S.  and Robinson, M. S. ",
   Title="{{C}omparative proteomics of clathrin-coated vesicles}",
   Journal="J Cell Biol",
   Year="2006",
   Volume="175",
   Number="4",
   Pages="571--578",
   Month="Nov"
}

% 17059403

Plant endoplasmin supports the protein secretory pathway and has a role in proliferating tissues. Klein, E. M.; Mascheroni, L.; Pompa, A.; Ragni, L.; Weimar, T.; Lilley, K. S.; Dupree, P.; and Vitale, A. Plant J, 48(5): 657–673. Dec 2006.
link bibtex

@Article{pmid17059403,
   Author="Klein, E. M.  and Mascheroni, L.  and Pompa, A.  and Ragni, L.  and Weimar, T.  and Lilley, K. S.  and Dupree, P.  and Vitale, A. ",
   Title="{{P}lant endoplasmin supports the protein secretory pathway and has a role in proliferating tissues}",
   Journal="Plant J",
   Year="2006",
   Volume="48",
   Number="5",
   Pages="657--673",
   Month="Dec"
}

% 17030443

Difference gel electrophoresis DIGE. Lilley, K. S.; and Friedman, D. B. Drug Discov Today Technol, 3(3): 347–353. 2006.
link bibtex

@Article{pmid24980539,
   Author="Lilley, K. S.  and Friedman, D. B. ",
   Title="{{D}ifference gel electrophoresis {D}{I}{G}{E}}",
   Journal="Drug Discov Today Technol",
   Year="2006",
   Volume="3",
   Number="3",
   Pages="347--353"
}

% 16807332

The tip-link antigen, a protein associated with the transduction complex of sensory hair cells, is protocadherin-15. Ahmed, Z. M.; Goodyear, R.; Riazuddin, S.; Lagziel, A.; Legan, P. K.; Behra, M.; Burgess, S. M.; Lilley, K. S.; Wilcox, E. R.; Riazuddin, S.; Griffith, A. J.; Frolenkov, G. I.; Belyantseva, I. A.; Richardson, G. P.; and Friedman, T. B. J Neurosci, 26(26): 7022–7034. Jun 2006.
link bibtex

@Article{pmid16807332,
   Author="Ahmed, Z. M.  and Goodyear, R.  and Riazuddin, S.  and Lagziel, A.  and Legan, P. K.  and Behra, M.  and Burgess, S. M.  and Lilley, K. S.  and Wilcox, E. R.  and Riazuddin, S.  and Griffith, A. J.  and Frolenkov, G. I.  and Belyantseva, I. A.  and Richardson, G. P.  and Friedman, T. B. ",
   Title="{{T}he tip-link antigen, a protein associated with the transduction complex of sensory hair cells, is protocadherin-15}",
   Journal="J Neurosci",
   Year="2006",
   Volume="26",
   Number="26",
   Pages="7022--7034",
   Month="Jun"
}

% 16753565

Circadian orchestration of the hepatic proteome. Reddy, A. B.; Karp, N. A.; Maywood, E. S.; Sage, E. A.; Deery, M.; O'Neill, J. S.; Wong, G. K.; Chesham, J.; Odell, M.; Lilley, K. S.; Kyriacou, C. P.; and Hastings, M. H. Curr Biol, 16(11): 1107–1115. Jun 2006.
link bibtex

@Article{pmid16753565,
   Author="Reddy, A. B.  and Karp, N. A.  and Maywood, E. S.  and Sage, E. A.  and Deery, M.  and O'Neill, J. S.  and Wong, G. K.  and Chesham, J.  and Odell, M.  and Lilley, K. S.  and Kyriacou, C. P.  and Hastings, M. H. ",
   Title="{{C}ircadian orchestration of the hepatic proteome}",
   Journal="Curr Biol",
   Year="2006",
   Volume="16",
   Number="11",
   Pages="1107--1115",
   Month="Jun"
}

% 16741246

The ABRF MARG microarray survey 2005: taking the pulse of the microarray field. Knudtson, K. L.; Auer, H.; Brooks, A. I.; Griffin, C.; Grills, G.; Hester, S.; Khitrov, G.; Lilley, K. S.; Massimi, A.; Tiesman, J. P.; and Viale, A. J Biomol Tech, 17(2): 176–186. Apr 2006.
link bibtex

@Article{pmid16741246,
   Author="Knudtson, K. L.  and Auer, H.  and Brooks, A. I.  and Griffin, C.  and Grills, G.  and Hester, S.  and Khitrov, G.  and Lilley, K. S.  and Massimi, A.  and Tiesman, J. P.  and Viale, A. ",
   Title="{{T}he {A}{B}{R}{F} {M}{A}{R}{G} microarray survey 2005: taking the pulse of the microarray field}",
   Journal="J Biomol Tech",
   Year="2006",
   Volume="17",
   Number="2",
   Pages="176--186",
   Month="Apr"
}

% 16670086

Differential gel electrophoresis and transgenic mitochondrial calcium reporters demonstrate spatiotemporal filtering in calcium control of mitochondria. Terhzaz, S.; Southall, T. D.; Lilley, K. S.; Kean, L.; Allan, A. K.; Davies, S. A.; and Dow, J. A. J Biol Chem, 281(27): 18849–18858. Jul 2006.
link bibtex

@Article{pmid16670086,
   Author="Terhzaz, S.  and Southall, T. D.  and Lilley, K. S.  and Kean, L.  and Allan, A. K.  and Davies, S. A.  and Dow, J. A. ",
   Title="{{D}ifferential gel electrophoresis and transgenic mitochondrial calcium reporters demonstrate spatiotemporal filtering in calcium control of mitochondria}",
   Journal="J Biol Chem",
   Year="2006",
   Volume="281",
   Number="27",
   Pages="18849--18858",
   Month="Jul"
}

% 16618929

Mapping the Arabidopsis organelle proteome. Dunkley, T. P.; Hester, S.; Shadforth, I. P.; Runions, J.; Weimar, T.; Hanton, S. L.; Griffin, J. L.; Bessant, C.; Brandizzi, F.; Hawes, C.; Watson, R. B.; Dupree, P.; and Lilley, K. S. Proc Natl Acad Sci U S A, 103(17): 6518–6523. Apr 2006.
link bibtex

@Article{pmid16618929,
   Author="Dunkley, T. P.  and Hester, S.  and Shadforth, I. P.  and Runions, J.  and Weimar, T.  and Hanton, S. L.  and Griffin, J. L.  and Bessant, C.  and Brandizzi, F.  and Hawes, C.  and Watson, R. B.  and Dupree, P.  and Lilley, K. S. ",
   Title="{{M}apping the {A}rabidopsis organelle proteome}",
   Journal="Proc Natl Acad Sci U S A",
   Year="2006",
   Volume="103",
   Number="17",
   Pages="6518--6523",
   Month="Apr"
}

% 16617121

Methods of quantitative proteomics and their application to plant organelle characterization. Lilley, K. S.; and Dupree, P. J Exp Bot, 57(7): 1493–1499. 2006.
link bibtex

@Article{pmid16617121,
   Author="Lilley, K. S.  and Dupree, P. ",
   Title="{{M}ethods of quantitative proteomics and their application to plant organelle characterization}",
   Journal="J Exp Bot",
   Year="2006",
   Volume="57",
   Number="7",
   Pages="1493--1499"
}

% 16519541

TNP-8N3-ADP photoaffinity labeling of two Na,K-ATPase sequences under separate Na+ plus K+ control. Ward, D. G.; Taylor, M.; Lilley, K. S.; and Cavieres, J. D. Biochemistry, 45(10): 3460–3471. Mar 2006.
link bibtex

@Article{pmid16519541,
   Author="Ward, D. G.  and Taylor, M.  and Lilley, K. S.  and Cavieres, J. D. ",
   Title="{{T}{N}{P}-8{N}3-{A}{D}{P} photoaffinity labeling of two {N}a,{K}-{A}{T}{P}ase sequences under separate {N}a+ plus {K}+ control}",
   Journal="Biochemistry",
   Year="2006",
   Volume="45",
   Number="10",
   Pages="3460--3471",
   Month="Mar"
}

% 20507426

Genetic and proteomic analysis of the role of luxS in the enteric phytopathogen, Erwinia carotovora. Coulthurst, S. J.; Lilley, K. S.; and Salmond, G. P. Mol Plant Pathol, 7(1): 31–45. Jan 2006.
link bibtex

@Article{pmid20507426,
   Author="Coulthurst, S. J.  and Lilley, K. S.  and Salmond, G. P. ",
   Title="{{G}enetic and proteomic analysis of the role of lux{S} in the enteric phytopathogen, {E}rwinia carotovora}",
   Journal="Mol Plant Pathol",
   Year="2006",
   Volume="7",
   Number="1",
   Pages="31--45",
   Month="Jan"
}

% 16242023

2005 (5)

i-Tracker: for quantitative proteomics using iTRAQ. Shadforth, I. P.; Dunkley, T. P.; Lilley, K. S.; and Bessant, C. BMC Genomics, 6: 145. Oct 2005.
link bibtex

@Article{pmid16242023,
   Author="Shadforth, I. P.  and Dunkley, T. P.  and Lilley, K. S.  and Bessant, C. ",
   Title="{i-{T}racker: for quantitative proteomics using i{T}{R}{A}{Q}}",
   Journal="BMC Genomics",
   Year="2005",
   Volume="6",
   Pages="145",
   Month="Oct"
}

% 16212444

Impact of replicate types on proteomic expression analysis. Karp, N. A.; Spencer, M.; Lindsay, H.; O'Dell, K.; and Lilley, K. S. J Proteome Res, 4(5): 1867–1871. 2005.
link bibtex

@Article{pmid16212444,
   Author="Karp, N. A.  and Spencer, M.  and Lindsay, H.  and O'Dell, K.  and Lilley, K. S. ",
   Title="{{I}mpact of replicate types on proteomic expression analysis}",
   Journal="J Proteome Res",
   Year="2005",
   Volume="4",
   Number="5",
   Pages="1867--1871"
}

% 16035117

Maximising sensitivity for detecting changes in protein expression: experimental design using minimal CyDyes. Karp, N. A.; and Lilley, K. S. Proteomics, 5(12): 3105–3115. Aug 2005.
link bibtex

@Article{pmid16035117,
   Author="Karp, N. A.  and Lilley, K. S. ",
   Title="{{M}aximising sensitivity for detecting changes in protein expression: experimental design using minimal {C}y{D}yes}",
   Journal="Proteomics",
   Year="2005",
   Volume="5",
   Number="12",
   Pages="3105--3115",
   Month="Aug"
}

% 15966837

Application of partial least squares discriminant analysis to two-dimensional difference gel studies in expression proteomics. Karp, N. A.; Griffin, J. L.; and Lilley, K. S. Proteomics, 5(1): 81–90. Jan 2005.
link bibtex

@Article{pmid15744836,
   Author="Karp, N. A.  and Griffin, J. L.  and Lilley, K. S. ",
   Title="{{A}pplication of partial least squares discriminant analysis to two-dimensional difference gel studies in expression proteomics}",
   Journal="Proteomics",
   Year="2005",
   Volume="5",
   Number="1",
   Pages="81--90",
   Month="Jan"
}

% 15618420

Analysis of detergent-resistant membranes in Arabidopsis. Evidence for plasma membrane lipid rafts. Borner, G. H.; Sherrier, D. J.; Weimar, T.; Michaelson, L. V.; Hawkins, N. D.; Macaskill, A.; Napier, J. A.; Beale, M. H.; Lilley, K. S.; and Dupree, P. Plant Physiol, 137(1): 104–116. Jan 2005.
link bibtex

@Article{pmid15618420,
   Author="Borner, G. H.  and Sherrier, D. J.  and Weimar, T.  and Michaelson, L. V.  and Hawkins, N. D.  and Macaskill, A.  and Napier, J. A.  and Beale, M. H.  and Lilley, K. S.  and Dupree, P. ",
   Title="{{A}nalysis of detergent-resistant membranes in {A}rabidopsis. {E}vidence for plasma membrane lipid rafts}",
   Journal="Plant Physiol",
   Year="2005",
   Volume="137",
   Number="1",
   Pages="104--116",
   Month="Jan"
}

% 15377392

2004 (9)

All about DIGE: quantification technology for differential-display 2D-gel proteomics. Lilley, K. S.; and Friedman, D. B. Expert Rev Proteomics, 1(4): 401–409. Dec 2004.
link bibtex

@Article{pmid15966837,
   Author="Lilley, K. S.  and Friedman, D. B. ",
   Title="{{A}ll about {D}{I}{G}{E}: quantification technology for differential-display 2{D}-gel proteomics}",
   Journal="Expert Rev Proteomics",
   Year="2004",
   Volume="1",
   Number="4",
   Pages="401--409",
   Month="Dec"
}

% 15744836

PEDRo: a database for storing, searching and disseminating experimental proteomics data. Garwood, K.; McLaughlin, T.; Garwood, C.; Joens, S.; Morrison, N.; Taylor, C. F.; Carroll, K.; Evans, C.; Whetton, A. D.; Hart, S.; Stead, D.; Yin, Z.; Brown, A. J.; Hesketh, A.; Chater, K.; Hansson, L.; Mewissen, M.; Ghazal, P.; Howard, J.; Lilley, K. S.; Gaskell, S. J.; Brass, A.; Hubbard, S. J.; Oliver, S. G.; and Paton, N. W. BMC Genomics, 5: 68. Sep 2004.
link bibtex

@Article{pmid15377392,
   Author="Garwood, K.  and McLaughlin, T.  and Garwood, C.  and Joens, S.  and Morrison, N.  and Taylor, C. F.  and Carroll, K.  and Evans, C.  and Whetton, A. D.  and Hart, S.  and Stead, D.  and Yin, Z.  and Brown, A. J.  and Hesketh, A.  and Chater, K.  and Hansson, L.  and Mewissen, M.  and Ghazal, P.  and Howard, J.  and Lilley, K. S.  and Gaskell, S. J.  and Brass, A.  and Hubbard, S. J.  and Oliver, S. G.  and Paton, N. W. ",
   Title="{{P}{E}{D}{R}o: a database for storing, searching and disseminating experimental proteomics data}",
   Journal="BMC Genomics",
   Year="2004",
   Volume="5",
   Pages="68",
   Month="Sep"
}

% 15295017

Localization of organelle proteins by isotope tagging (LOPIT). Dunkley, T. P.; Watson, R.; Griffin, J. L.; Dupree, P.; and Lilley, K. S. Mol Cell Proteomics, 3(11): 1128–1134. Nov 2004.
link bibtex

@Article{pmid15295017,
   Author="Dunkley, T. P.  and Watson, R.  and Griffin, J. L.  and Dupree, P.  and Lilley, K. S. ",
   Title="{{L}ocalization of organelle proteins by isotope tagging ({L}{O}{P}{I}{T})}",
   Journal="Mol Cell Proteomics",
   Year="2004",
   Volume="3",
   Number="11",
   Pages="1128--1134",
   Month="Nov"
}

% 15239931

Determining a significant change in protein expression with DeCyder during a pair-wise comparison using two-dimensional difference gel electrophoresis. Karp, N. A.; Kreil, D. P.; and Lilley, K. S. Proteomics, 4(5): 1421–1432. May 2004.
link bibtex

@Article{pmid15188411,
   Author="Karp, N. A.  and Kreil, D. P.  and Lilley, K. S. ",
   Title="{{D}etermining a significant change in protein expression with {D}e{C}yder during a pair-wise comparison using two-dimensional difference gel electrophoresis}",
   Journal="Proteomics",
   Year="2004",
   Volume="4",
   Number="5",
   Pages="1421--1432",
   Month="May"
}

% 15157176

The use of isotope-coded affinity tags (ICAT) to study organelle proteomes in Arabidopsis thaliana. Dunkley, T. P.; Dupree, P.; Watson, R. B.; and Lilley, K. S. Biochem Soc Trans, 32(Pt3): 520–523. Jun 2004.
link bibtex

@Article{pmid15157176,
   Author="Dunkley, T. P.  and Dupree, P.  and Watson, R. B.  and Lilley, K. S. ",
   Title="{{T}he use of isotope-coded affinity tags ({I}{C}{A}{T}) to study organelle proteomes in {A}rabidopsis thaliana}",
   Journal="Biochem Soc Trans",
   Year="2004",
   Volume="32",
   Number="Pt3",
   Pages="520--523",
   Month="Jun"
}

% 15098003

Mitochondrial dysfunction in schizophrenia: evidence for compromised brain metabolism and oxidative stress. Prabakaran, S.; Swatton, J. E.; Ryan, M. M.; Huffaker, S. J.; Huang, J. T.; Griffin, J. L.; Wayland, M.; Freeman, T.; Dudbridge, F.; Lilley, K. S.; Karp, N. A.; Hester, S.; Tkachev, D.; Mimmack, M. L.; Yolken, R. H.; Webster, M. J.; Torrey, E. F.; and Bahn, S. Mol Psychiatry, 9(7): 684–697. Jul 2004.
link bibtex

@Article{pmid15098003,
   Author="Prabakaran, S.  and Swatton, J. E.  and Ryan, M. M.  and Huffaker, S. J.  and Huang, J. T.  and Griffin, J. L.  and Wayland, M.  and Freeman, T.  and Dudbridge, F.  and Lilley, K. S.  and Karp, N. A.  and Hester, S.  and Tkachev, D.  and Mimmack, M. L.  and Yolken, R. H.  and Webster, M. J.  and Torrey, E. F.  and Bahn, S. ",
   Title="{{M}itochondrial dysfunction in schizophrenia: evidence for compromised brain metabolism and oxidative stress}",
   Journal="Mol Psychiatry",
   Year="2004",
   Volume="9",
   Number="7",
   Pages="684--697",
   Month="Jul"
}

% 15044229

DNA microarray normalization methods can remove bias from differential protein expression analysis of 2D difference gel electrophoresis results. Kreil, D. P.; Karp, N. A.; and Lilley, K. S. Bioinformatics, 20(13): 2026–2034. Sep 2004.
link bibtex

@Article{pmid15044229,
   Author="Kreil, D. P.  and Karp, N. A.  and Lilley, K. S. ",
   Title="{{D}{N}{A} microarray normalization methods can remove bias from differential protein expression analysis of 2{D} difference gel electrophoresis results}",
   Journal="Bioinformatics",
   Year="2004",
   Volume="20",
   Number="13",
   Pages="2026--2034",
   Month="Sep"
}

% 14708031

Protein profiling of human postmortem brain using 2-dimensional fluorescence difference gel electrophoresis (2-D DIGE). Swatton, J. E.; Prabakaran, S.; Karp, N. A.; Lilley, K. S.; and Bahn, S. Mol Psychiatry, 9(2): 128–143. Feb 2004.
link bibtex

@Article{pmid14708031,
   Author="Swatton, J. E.  and Prabakaran, S.  and Karp, N. A.  and Lilley, K. S.  and Bahn, S. ",
   Title="{{P}rotein profiling of human postmortem brain using 2-dimensional fluorescence difference gel electrophoresis (2-{D} {D}{I}{G}{E})}",
   Journal="Mol Psychiatry",
   Year="2004",
   Volume="9",
   Number="2",
   Pages="128--143",
   Month="Feb"
}

% 14671020

SETH1 and SETH2, two components of the glycosylphosphatidylinositol anchor biosynthetic pathway, are required for pollen germination and tube growth in Arabidopsis. Lalanne, E.; Honys, D.; Johnson, A.; Borner, G. H.; Lilley, K. S.; Dupree, P.; Grossniklaus, U.; and Twell, D. Plant Cell, 16(1): 229–240. Jan 2004.
link bibtex

@Article{pmid14671020,
   Author="Lalanne, E.  and Honys, D.  and Johnson, A.  and Borner, G. H.  and Lilley, K. S.  and Dupree, P.  and Grossniklaus, U.  and Twell, D. ",
   Title="{{S}{E}{T}{H}1 and {S}{E}{T}{H}2, two components of the glycosylphosphatidylinositol anchor biosynthetic pathway, are required for pollen germination and tube growth in {A}rabidopsis}",
   Journal="Plant Cell",
   Year="2004",
   Volume="16",
   Number="1",
   Pages="229--240",
   Month="Jan"
}

% 12923179

2003 (6)

Protein profiling using two-dimensional difference gel electrophoresis (2-D DIGE). Lilley, K. S. Curr Protoc Protein Sci, Chapter 22: 1–22. Feb 2003.
link bibtex

@Article{pmid18429243,
   Author="Lilley, K. S. ",
   Title="{{P}rotein profiling using two-dimensional difference gel electrophoresis (2-{D} {D}{I}{G}{E})}",
   Journal="Curr Protoc Protein Sci",
   Year="2003",
   Volume="Chapter 22",
   Pages="1--22",
   Month="Feb"
}

% 18386883

Proteomics in Drosophila melanogaster. Lilley, K. S.; and Griffiths, D. R. Brief Funct Genomic Proteomic, 2(2): 106–113. Jul 2003.
link bibtex

@Article{pmid15239931,
   Author="Lilley, K. S.  and Griffiths, D. R. ",
   Title="{{P}roteomics in {D}rosophila melanogaster}",
   Journal="Brief Funct Genomic Proteomic",
   Year="2003",
   Volume="2",
   Number="2",
   Pages="106--113",
   Month="Jul"
}

% 15188411

Ubiquitination of alpha-synuclein in Lewy bodies is a pathological event not associated with impairment of proteasome function. Tofaris, G. K.; Razzaq, A.; Ghetti, B.; Lilley, K. S.; and Spillantini, M. G. J Biol Chem, 278(45): 44405–44411. Nov 2003.
link bibtex

@Article{pmid12923179,
   Author="Tofaris, G. K.  and Razzaq, A.  and Ghetti, B.  and Lilley, K. S.  and Spillantini, M. G. ",
   Title="{{U}biquitination of alpha-synuclein in {L}ewy bodies is a pathological event not associated with impairment of proteasome function}",
   Journal="J Biol Chem",
   Year="2003",
   Volume="278",
   Number="45",
   Pages="44405--44411",
   Month="Nov"
}

% 12805588

Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis. Borner, G. H.; Lilley, K. S.; Stevens, T. J.; and Dupree, P. Plant Physiol, 132(2): 568–577. Jun 2003.
link bibtex

@Article{pmid12805588,
   Author="Borner, G. H.  and Lilley, K. S.  and Stevens, T. J.  and Dupree, P. ",
   Title="{{I}dentification of glycosylphosphatidylinositol-anchored proteins in {A}rabidopsis. {A} proteomic and genomic analysis}",
   Journal="Plant Physiol",
   Year="2003",
   Volume="132",
   Number="2",
   Pages="568--577",
   Month="Jun"
}

% 12610571

A systematic approach to modeling, capturing, and disseminating proteomics experimental data. Taylor, C. F.; Paton, N. W.; Garwood, K. L.; Kirby, P. D.; Stead, D. A.; Yin, Z.; Deutsch, E. W.; Selway, L.; Walker, J.; Riba-Garcia, I.; Mohammed, S.; Deery, M. J.; Howard, J. A.; Dunkley, T.; Aebersold, R.; Kell, D. B.; Lilley, K. S.; Roepstorff, P.; Yates, J. R.; Brass, A.; Brown, A. J.; Cash, P.; Gaskell, S. J.; Hubbard, S. J.; and Oliver, S. G. Nat Biotechnol, 21(3): 247–254. Mar 2003.
link bibtex

@Article{pmid12610571,
   Author="Taylor, C. F.  and Paton, N. W.  and Garwood, K. L.  and Kirby, P. D.  and Stead, D. A.  and Yin, Z.  and Deutsch, E. W.  and Selway, L.  and Walker, J.  and Riba-Garcia, I.  and Mohammed, S.  and Deery, M. J.  and Howard, J. A.  and Dunkley, T.  and Aebersold, R.  and Kell, D. B.  and Lilley, K. S.  and Roepstorff, P.  and Yates, J. R.  and Brass, A.  and Brown, A. J.  and Cash, P.  and Gaskell, S. J.  and Hubbard, S. J.  and Oliver, S. G. ",
   Title="{{A} systematic approach to modeling, capturing, and disseminating proteomics experimental data}",
   Journal="Nat Biotechnol",
   Year="2003",
   Volume="21",
   Number="3",
   Pages="247--254",
   Month="Mar"
}

% 12414799

Characterization of the necrotic protein that regulates the Toll-mediated immune response in Drosophila. Robertson, A. S.; Belorgey, D.; Lilley, K. S.; Lomas, D. A.; Gubb, D.; and Dafforn, T. R. J Biol Chem, 278(8): 6175–6180. Feb 2003.
link bibtex

@Article{pmid12414799,
   Author="Robertson, A. S.  and Belorgey, D.  and Lilley, K. S.  and Lomas, D. A.  and Gubb, D.  and Dafforn, T. R. ",
   Title="{{C}haracterization of the necrotic protein that regulates the {T}oll-mediated immune response in {D}rosophila}",
   Journal="J Biol Chem",
   Year="2003",
   Volume="278",
   Number="8",
   Pages="6175--6180",
   Month="Feb"
}

% 11827822

2002 (1)

Two-dimensional gel electrophoresis: recent advances in sample preparation, detection and quantitation. Lilley, K. S.; Razzaq, A.; and Dupree, P. Curr Opin Chem Biol, 6(1): 46–50. Feb 2002.
link bibtex

@Article{pmid11827822,
   Author="Lilley, K. S.  and Razzaq, A.  and Dupree, P. ",
   Title="{{T}wo-dimensional gel electrophoresis: recent advances in sample preparation, detection and quantitation}",
   Journal="Curr Opin Chem Biol",
   Year="2002",
   Volume="6",
   Number="1",
   Pages="46--50",
   Month="Feb"
}

% 11171059

2001 (1)

Phosphorylation of elongation factor-2 kinase on serine 499 by cAMP-dependent protein kinase induces Ca2+/calmodulin-independent activity. Diggle, T. A.; Subkhankulova, T.; Lilley, K. S.; Shikotra, N.; Willis, A. E.; and Redpath, N. T. Biochem J, 353(Pt 3): 621–626. Feb 2001.
link bibtex

@Article{pmid11171059,
   Author="Diggle, T. A.  and Subkhankulova, T.  and Lilley, K. S.  and Shikotra, N.  and Willis, A. E.  and Redpath, N. T. ",
   Title="{{P}hosphorylation of elongation factor-2 kinase on serine 499 by c{A}{M}{P}-dependent protein kinase induces {C}a2+/calmodulin-independent activity}",
   Journal="Biochem J",
   Year="2001",
   Volume="353",
   Number="Pt 3",
   Pages="621--626",
   Month="Feb"
}

% 19499025

1999 (1)

Survey of current trends in DNA synthesis core facilities. Hager, K. M.; Fox, J. W.; Gunthorpe, M.; Lilley, K. S.; and Yeung, A. J Biomol Tech, 10(4): 187–193. Dec 1999.
link bibtex

@Article{pmid19499025,
   Author="Hager, K. M.  and Fox, J. W.  and Gunthorpe, M.  and Lilley, K. S.  and Yeung, A. ",
   Title="{{S}urvey of current trends in {D}{N}{A} synthesis core facilities}",
   Journal="J Biomol Tech",
   Year="1999",
   Volume="10",
   Number="4",
   Pages="187--193",
   Month="Dec"
}

% 8991074

1996 (1)

Mutational spectra of tamoxifen-induced mutations in the livers of lacI transgenic rats. Davies, R.; Oreffo, V. I.; Bayliss, S.; Dinh, P. A.; Lilley, K. S.; White, I. N.; Smith, L. L.; and Styles, J. A. Environ Mol Mutagen, 28(4): 430–433. 1996.
link bibtex

@Article{pmid8991074,
   Author="Davies, R.  and Oreffo, V. I.  and Bayliss, S.  and Dinh, P. A.  and Lilley, K. S.  and White, I. N.  and Smith, L. L.  and Styles, J. A. ",
   Title="{{M}utational spectra of tamoxifen-induced mutations in the livers of lac{I} transgenic rats}",
   Journal="Environ Mol Mutagen",
   Year="1996",
   Volume="28",
   Number="4",
   Pages="430--433"
}

% 1633808

1992 (4)

The essential active-site lysines of clostridial glutamate dehydrogenase. A study with pyridoxal-5'-phosphate. Lilley, K. S.; and Engel, P. C. Eur J Biochem, 207(2): 533–540. Jul 1992.
link bibtex

@Article{pmid1633808,
   Author="Lilley, K. S.  and Engel, P. C. ",
   Title="{{T}he essential active-site lysines of clostridial glutamate dehydrogenase. {A} study with pyridoxal-5'-phosphate}",
   Journal="Eur J Biochem",
   Year="1992",
   Volume="207",
   Number="2",
   Pages="533--540",
   Month="Jul"
}

% 1352616

GroEL proteins from three Pseudomonas species. Fowell, S. L.; Lilley, K. S.; Jones, D.; and Maxwell, A. Mol Microbiol, 6(11): 1575–1576. Jun 1992.
link bibtex

@Article{pmid1352616,
   Author="Fowell, S. L.  and Lilley, K. S.  and Jones, D.  and Maxwell, A. ",
   Title="{{G}ro{E}{L} proteins from three {P}seudomonas species}",
   Journal="Mol Microbiol",
   Year="1992",
   Volume="6",
   Number="11",
   Pages="1575--1576",
   Month="Jun"
}

% 1553382

Subunit assembly and active site location in the structure of glutamate dehydrogenase. Baker, P. J.; Britton, K. L.; Engel, P. C.; Farrants, G. W.; Lilley, K. S.; Rice, D. W.; and Stillman, T. J. Proteins, 12(1): 75–86. Jan 1992.
link bibtex

@Article{pmid1553382,
   Author="Baker, P. J.  and Britton, K. L.  and Engel, P. C.  and Farrants, G. W.  and Lilley, K. S.  and Rice, D. W.  and Stillman, T. J. ",
   Title="{{S}ubunit assembly and active site location in the structure of glutamate dehydrogenase}",
   Journal="Proteins",
   Year="1992",
   Volume="12",
   Number="1",
   Pages="75--86",
   Month="Jan"
}

% 1334338

Characterization of a kallidin receptor in the eel intestine. Cougnon, N.; Deacon, C. F.; Lilley, K. S.; and Henderson, I. W. Agents Actions Suppl, 38 ( Pt 2): 382–389. 1992.
link bibtex

@Article{pmid1334338,
   Author="Cougnon, N.  and Deacon, C. F.  and Lilley, K. S.  and Henderson, I. W. ",
   Title="{{C}haracterization of a kallidin receptor in the eel intestine}",
   Journal="Agents Actions Suppl",
   Year="1992",
   Volume="38 ( Pt 2)",
   Pages="382--389"
}

% 1954226

1991 (1)

The partial amino acid sequence of the NAD(+)-dependent glutamate dehydrogenase of Clostridium symbiosum: implications for the evolution and structural basis of coenzyme specificity. Lilley, K. S.; Baker, P. J.; Britton, K. L.; Stillman, T. J.; Brown, P. E.; Moir, A. J.; Engel, P. C.; Rice, D. W.; Bell, J. E.; and Bell, E. Biochim Biophys Acta, 1080(3): 191–197. Nov 1991.
link bibtex

@Article{pmid1954226,
   Author="Lilley, K. S.  and Baker, P. J.  and Britton, K. L.  and Stillman, T. J.  and Brown, P. E.  and Moir, A. J.  and Engel, P. C.  and Rice, D. W.  and Bell, J. E.  and Bell, E. ",
   Title="{{T}he partial amino acid sequence of the {N}{A}{D}(+)-dependent glutamate dehydrogenase of {C}lostridium symbiosum: implications for the evolution and structural basis of coenzyme specificity}",
   Journal="Biochim Biophys Acta",
   Year="1991",
   Volume="1080",
   Number="3",
   Pages="191--197",
   Month="Nov"
}

% 2335214

1990 (1)

N-terminal sequence similarities between components of the multicatalytic proteinase complex. Lilley, K. S.; Davison, M. D.; and Rivett, A. J. FEBS Lett, 262(2): 327–329. Mar 1990.
link bibtex

@Article{pmid2335214,
   Author="Lilley, K. S.  and Davison, M. D.  and Rivett, A. J. ",
   Title="{{N}-terminal sequence similarities between components of the multicatalytic proteinase complex}",
   Journal="FEBS Lett",
   Year="1990",
   Volume="262",
   Number="2",
   Pages="327--329",
   Month="Mar"
}

% 2709002

1989 (1)

Release of iron from ferritin molecules and their iron-cores by 3-hydroxypyridinone chelators in vitro. Brady, M. C.; Lilley, K. S.; Treffry, A.; Harrison, P. M.; Hider, R. C.; and Taylor, P. D. J Inorg Biochem, 35(1): 9–22. Jan 1989.
link bibtex

@Article{pmid2709002,
   Author="Brady, M. C.  and Lilley, K. S.  and Treffry, A.  and Harrison, P. M.  and Hider, R. C.  and Taylor, P. D. ",
   Title="{{R}elease of iron from ferritin molecules and their iron-cores by 3-hydroxypyridinone chelators in vitro}",
   Journal="J Inorg Biochem",
   Year="1989",
   Volume="35",
   Number="1",
   Pages="9--22",
   Month="Jan"
}