Keyword: genetic

2020 (2)
Alcohol Drinking and Bladder Cancer Risk From a Pooled Analysis of Ten Cohort Studies in Japan. Masaoka, H., Matsuo, K., Oze, I., Ito, H., Naito, M., Wada, K., Nagata, C., Nakayama, T., Kitamura, Y., Sadakane, A., Tamakoshi, A., Tsuji, I., Sugawara, Y., Sawada, N., Mizoue, T., Inoue, M., Tanaka, K., Tsugane, S., & Shimazu, T. Journal of Epidemiology, 30(7):309–313, July, 2020.
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The Genomics Research and Innovation Network: creating an interoperable, federated, genomics learning system. Mandl, K. D., Glauser, T., Krantz, I. D., Avillach, P., Bartels, A., Beggs, A. H., Biswas, S., Bourgeois, F. T., Corsmo, J., Dauber, A., Devkota, B., Fleisher, G. R., Heath, A. P., Helbig, I., Hirschhorn, J. N., Kilbourn, J., Kong, S. W., Kornetsky, S., Majzoub, J. A., Marsolo, K., Martin, L. J., Nix, J., Schwarzhoff, A., Stedman, J., Strauss, A., Sund, K. L., Taylor, D. M., White, P. S., Marsh, E., Grimberg, A., Hawkes, C., Genomics Research, & Network, I. Genetics in Medicine: Official Journal of the American College of Medical Genetics, 22(2):371–380, February, 2020.
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2019 (2)
Identification of the novel Ido1 imprinted locus and its potential epigenetic role in pregnancy loss. Spinelli, P., Latchney, S. E., Reed, J. M., Fields, A., Baier, B. S., Lu, X., McCall, M. N., Murphy, S. P., Mak, W., & Susiarjo, M. Human Molecular Genetics, 28(4):662–674, 2019.
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Unique and assay specific features of NOMe-, ATAC- and DNase I-seq data. Nordström, K. J. V., Schmidt, F., Gasparoni, N., Salhab, A., Gasparoni, G., Kattler, K., Müller, F., Ebert, P., Costa, I. G., DEEP consortium, Pfeifer, N., Lengauer, T., Schulz, M. H., & Walter, J. Nucleic Acids Research, 47(20):10580–10596, November, 2019.
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2018 (1)
Increased CD4(+) T cell lineage commitment determined by CpG methylation correlates with better prognosis in urinary bladder cancer patients. Ahlén Bergman, E., Hartana, C. A., Johansson, M., Linton, L. B, Berglund, S., Hyllienmark, M., Lundgren, C., Holmström, B., Palmqvist, K., Hansson, J., Alamdari, F., Huge, Y., Aljabery, F., Riklund, K., Winerdal, M. E, Krantz, D., Zirakzadeh, A A., Marits, P., Sjöholm, L. K, Sherif, A., & Winqvist, O. Clinical epigenetics, 10(1):102–102, August, 2018.
Increased CD4(+) T cell lineage commitment determined by CpG methylation correlates with better prognosis in urinary bladder cancer patients [link]Paper  doi  abstract   bibtex   
2017 (2)
The EcoCyc database: reflecting new knowledge about Escherichia coli K-12. Keseler, I. M., Mackie, A., Santos-Zavaleta, A., Billington, R., Bonavides-Martínez, César, Caspi, R., Fulcher, C., Gama-Castro, S., Kothari, A., Krummenacker, M., Latendresse, M., Muñiz-Rascado, L., Ong, Q., Paley, S., Peralta-Gil, M., Subhraveti, P., Velázquez-Ramírez, David A., Weaver, D., Collado-Vides, J., Paulsen, I., & Karp, P. D. Nucleic Acids Res, 45(D1):D543-D550, 2017.
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Ascorbic acid, but not dehydroascorbic acid increases intracellular vitamin C content to decrease Hypoxia Inducible Factor -1 alpha activity and reduce malignant potential in human melanoma. Fischer, A. P. & Miles, S. L. Biomedicine & Pharmacotherapy = Biomedecine & Pharmacotherapie, 86:502–513, February, 2017.
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2016 (7)
Reticulate evolutionary history and extensive introgression in mosquito species revealed by phylogenetic network analysis. Wen, D., Yu, Y., Hahn, M., W., & Nakhleh, L. Molecular ecology, 25(11):2361-2372, 6, 2016.
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CRISPR-on system for the activation of the endogenous human INS gene. Gimenez, C A, Ielpi, M, Mutto, A, Grosembacher, L, Argibay, P, & Pereyra-Bonnet, F Gene therapy, 23(6):543–547, June, 2016. Place: England
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Physical Activity Benefits the Skeleton of Children Genetically Predisposed to Lower Bone Density in Adulthood. Mitchell, J. A., Chesi, A., Elci, O., McCormack, S. E., Roy, S. M., Kalkwarf, H. J., Lappe, J. M., Gilsanz, V., Oberfield, S. E., Shepherd, J. A., Kelly, A., Grant, S. F., & Zemel, B. S. Journal of Bone and Mineral Research: The Official Journal of the American Society for Bone and Mineral Research, 31(8):1504–1512, 2016.
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PlanMine–a mineable resource of planarian biology and biodiversity. Brandl, H., Moon, H., Vila-Farré, M., Liu, S., Henry, I., & Rink, J. C. Nucleic Acids Research, 44(D1):D764–773, January, 2016.
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Tools for Predicting the Functional Impact of Nonsynonymous Genetic Variation. Tang, H. & Thomas, P. D. Genetics, 203(2):635–647, 2016.
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Enhancing prefrontal neuron activity enables associative learning of temporally disparate events. Volle, J., Yu, X., Sun, H., Tanninen, S. E., Insel, N., & Takehara-Nishiuchi, K. Cell reports, 15(11):2400–2410, June, 2016. PMID 27264170
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Repression of harmful meiotic recombination in centromeric regions. Nambiar, M. & Smith, G. R. Seminars in Cell & Developmental Biology, 54:188–197, June, 2016.
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2015 (2)
MouseMine: a new data warehouse for MGI. Motenko, H., Neuhauser, S. B., O'Keefe, M., & Richardson, J. E. Mammalian Genome: Official Journal of the International Mammalian Genome Society, 26(7-8):325–330, August, 2015.
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Cross-organism analysis using InterMine. Lyne, R., Sullivan, J., Butano, D., Contrino, S., Heimbach, J., Hu, F., Kalderimis, A., Lyne, M., Smith, R. N., Štěpán, R., Balakrishnan, R., Binkley, G., Harris, T., Karra, K., Moxon, S. A. T., Motenko, H., Neuhauser, S., Ruzicka, L., Cherry, M., Richardson, J., Stein, L., Westerfield, M., Worthey, E., & Micklem, G. Genesis (New York, N.Y.: 2000), 53(8):547–560, August, 2015.
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2014 (3)
Cruciferous vegetables and risk of colorectal neoplasms: a systematic review and meta-analysis. Tse, G. & Eslick, G. D. Nutrition and Cancer, 66(1):128–139, 2014.
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Meiosis gene inventory of four ciliates reveals the prevalence of a synaptonemal complex-independent crossover pathway. Chi, J., Mahé, F., Loidl, J., Logsdon, J., & Dunthorn, M. Molecular Biology and Evolution, 31(3):660–672, March, 2014.
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Chronic exposure to ethanol of male mice before mating produces attention deficit hyperactivity disorder-like phenotype along with epigenetic dysregulation of dopamine transporter expression in mouse offspring. Kim, P., Choi, C. S., Park, J. H., Joo, S. H., Kim, S. Y., Ko, H. M., Kim, K. C., Jeon, S. J., Park, S. H., Han, S., Ryu, J. H., Cheong, J. H., Han, J. Y., Ko, K. N., & Shin, C. Y. Journal of neuroscience research, 92(5):658–70, May, 2014.
Chronic exposure to ethanol of male mice before mating produces attention deficit hyperactivity disorder-like phenotype along with epigenetic dysregulation of dopamine transporter expression in mouse offspring. [link]Paper  doi  abstract   bibtex   
2013 (1)
Genomes and G-quadruplexes: For better or for worse. Tarsounas, M. & Tijsterman, M. Journal of Molecular Biology, 425(23):4782–9, September, 2013. tex.ids= tarsounasGenomesGQuadruplexesBetter2013, tarsounasGenomesGQuadruplexesBetter2013a ISBN: 00222836 publisher: Elsevier B.V.
Genomes and G-quadruplexes: For better or for worse [link]Paper  doi  abstract   bibtex   
2012 (8)
The scaffolding and signalling functions of a localization factor impact polar development. Curtis, P. D, Quardokus, E. M, Lawler, M. L, Guo, X., Klein, D., Chen, J. C, Arnold, R. J, & Brun, Y. V Molecular microbiology, 84(4):712--735, May, 2012.
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G-quadruplexes in RNA biology. Millevoi, S., Moine, H., & Vagner, S. Wiley interdisciplinary reviews. RNA, 3(4):495–507, 2012.
G-quadruplexes in RNA biology. [link]Paper  doi  abstract   bibtex   
Combinatorial pharmacogenetic interactions of bucindolol and β1, α2C adrenergic receptor polymorphisms. O'Connor, C. M., Fiuzat, M., Carson, P. E., Anand, I. S., Plehn, J. F., Gottlieb, S. S., Silver, M. A., Lindenfeld, J., Miller, A. B., White, M., Walsh, R., Nelson, P., Medway, A., Davis, G., Robertson, A. D., Port, J. D., Carr, J., Murphy, G. A., Lazzeroni, L. C., Abraham, W. T., Liggett, S. B., & Bristow, M. R. PloS One, 7(10):e44324, 2012.
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Human evolutionary genomics: ethical and interpretive issues. Vitti, J., J., Cho, M., K., Tishkoff, S., a., & Sabeti, P., C. Trends in genetics : TIG, 28(3):137-45, Elsevier Ltd, 3, 2012.
Human evolutionary genomics: ethical and interpretive issues. [pdf]Paper  Human evolutionary genomics: ethical and interpretive issues. [link]Website  abstract   bibtex   
Modeling and molecular dynamics of HPA-1a and -1b polymorphisms: effects on the structure of the β3 subunit of the αIIbβ3 integrin. Jallu, V., Poulain, P., Fuchs, P. F. J., Kaplan, C., & de Brevern, A. G. PloS One, 7(11):e47304, 2012.
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Incorporating RNA-seq data into the zebrafish Ensembl genebuild. Collins, J. E, White, S., Searle, S. M J, & Stemple, D. L Genome research, 22(10):2067–78, October, 2012.
Incorporating RNA-seq data into the zebrafish Ensembl genebuild. [link]Paper  doi  abstract   bibtex   
No evidence for intra-segment recombination of 2009 H1N1 influenza virus in swine. Boni, M. F., Smith, G. J. D., Holmes, E. C., & Vijaykrishna, D. Gene, 494(2):242–245, February, 2012.
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Bivalent recognition of nucleosomes by the tandem PHD fingers of the CHD4 ATPase is required for CHD4-mediated repression. Musselman, C., Ramiŕez, J., Sims, J., Mansfield, R., Oliver, S., Denu, J., Mackay, J., Wade, P., Hagman, J., & Kutateladze, T. Proceedings of the National Academy of Sciences of the United States of America, 109(3):787-792, 2012. cited By 83
Bivalent recognition of nucleosomes by the tandem PHD fingers of the CHD4 ATPase is required for CHD4-mediated repression [link]Paper  doi  abstract   bibtex   
2011 (7)
Epigenetic mechanisms mediating vulnerability and resilience to psychiatric disorders. Dudley, K. J, Li, X., Kobor, M. S, Kippin, T. E, & Bredy, T. W Neuroscience and biobehavioral reviews, 35(7):1544–51, June, 2011. Publisher: Elsevier Ltd
Epigenetic mechanisms mediating vulnerability and resilience to psychiatric disorders. [link]Paper  doi  abstract   bibtex   
Common variants at ABCA7, MS4A6A/MS4A4E, EPHA1, CD33 and CD2AP are associated with Alzheimer's disease. Hollingworth, P., Harold, D., Sims, R., Gerrish, A., Lambert, J., Carrasquillo, M. M., Abraham, R., Hamshere, M. L., Pahwa, J. S., Moskvina, V., Dowzell, K., Jones, N., Stretton, A., Thomas, C., Richards, A., Ivanov, D., Widdowson, C., Chapman, J., Lovestone, S., Powell, J., Proitsi, P., Lupton, M. K., Brayne, C., Rubinsztein, D. C., Gill, M., Lawlor, B., Lynch, A., Brown, K. S., Passmore, P. A., Craig, D., McGuinness, B., Todd, S., Holmes, C., Mann, D., Smith, A. D., Beaumont, H., Warden, D., Wilcock, G., Love, S., Kehoe, P. G., Hooper, N. M., Vardy, E. R. L. C., Hardy, J., Mead, S., Fox, N. C., Rossor, M., Collinge, J., Maier, W., Jessen, F., Rüther, E., Schürmann, B., Heun, R., Kölsch, H., van den Bussche, H., Heuser, I., Kornhuber, J., Wiltfang, J., Dichgans, M., Frölich, L., Hampel, H., Gallacher, J., Hüll, M., Rujescu, D., Giegling, I., Goate, A. M., Kauwe, J. S. K., Cruchaga, C., Nowotny, P., Morris, J. C., Mayo, K., Sleegers, K., Bettens, K., Engelborghs, S., De Deyn, P. P., Van Broeckhoven, C., Livingston, G., Bass, N. J., Gurling, H., McQuillin, A., Gwilliam, R., Deloukas, P., Al-Chalabi, A., Shaw, C. E., Tsolaki, M., Singleton, A. B., Guerreiro, R., Mühleisen, T. W., Nöthen, M. M., Moebus, S., Jöckel, K., Klopp, N., Wichmann, H., Pankratz, V. S., Sando, S. B., Aasly, J. O., Barcikowska, M., Wszolek, Z. K., Dickson, D. W., Graff-Radford, N. R., Petersen, R. C., Alzheimer's Disease Neuroimaging Initiative, van Duijn, C. M., Breteler, M. M. B., Ikram, M. A., DeStefano, A. L., Fitzpatrick, A. L., Lopez, O., Launer, L. J., Seshadri, S., CHARGE consortium, Berr, C., Campion, D., Epelbaum, J., Dartigues, J., Tzourio, C., Alpérovitch, A., Lathrop, M., EADI1 consortium, Feulner, T. M., Friedrich, P., Riehle, C., Krawczak, M., Schreiber, S., Mayhaus, M., Nicolhaus, S., Wagenpfeil, S., Steinberg, S., Stefansson, H., Stefansson, K., Snaedal, J., Björnsson, S., Jonsson, P. V., Chouraki, V., Genier-Boley, B., Hiltunen, M., Soininen, H., Combarros, O., Zelenika, D., Delepine, M., Bullido, M. J., Pasquier, F., Mateo, I., Frank-Garcia, A., Porcellini, E., Hanon, O., Coto, E., Alvarez, V., Bosco, P., Siciliano, G., Mancuso, M., Panza, F., Solfrizzi, V., Nacmias, B., Sorbi, S., Bossù, P., Piccardi, P., Arosio, B., Annoni, G., Seripa, D., Pilotto, A., Scarpini, E., Galimberti, D., Brice, A., Hannequin, D., Licastro, F., Jones, L., Holmans, P. A., Jonsson, T., Riemenschneider, M., Morgan, K., Younkin, S. G., Owen, M. J., O'Donovan, M., Amouyel, P., & Williams, J. Nature Genetics, 43(5):429–435, May, 2011.
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An experimentally anchored map of transcriptional start sites in the model cyanobacterium Synechocystis sp. PCC6803. Mitschke, J., Georg, J., Scholz, I., Sharma, C. M., Dienst, D., Bantscheff, J., Voß, B., Steglich, C., Wilde, A., Vogel, J., & Hess, W. R. Proceedings of the National Academy of Sciences, 108(5):2124–2129, February, 2011.
An experimentally anchored map of transcriptional start sites in the model cyanobacterium Synechocystis sp. PCC6803 [link]Paper  doi  abstract   bibtex   
Double-strand break end resection and repair pathway choice. Symington, L. S. & Gautier, J. Annual Review of Genetics, 45:247–271, 2011.
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COANCESTRY: a program for simulating, estimating and analysing relatedness and inbreeding coefficients. Wang, J. Molecular Ecology Resources, 11(1):141–145, January, 2011.
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A tandem sequence motif acts as a distance-dependent enhancer in a set of genes involved in translation by binding the proteins NonO and SFPQ. Roepcke, S., Stahlberg, S., Klein, H., Schulz, M. H., Theobald, L., Gohlke, S., Vingron, M., & Walther, D. J. BMC genomics, 12:624, December, 2011.
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Disruption of thyroid hormone receptor-mediated transcription and thyroid hormone-induced Purkinje cell dendrite arborization by polybrominated diphenyl ethers. Ibhazehiebo, K., Iwasaki, T., Kimura-Kuroda, J., Miyazaki, W., Shimokawa, N., & Koibuchi, N. Environmental health perspectives, 119(2):168–75, February, 2011.
Disruption of thyroid hormone receptor-mediated transcription and thyroid hormone-induced Purkinje cell dendrite arborization by polybrominated diphenyl ethers. [link]Paper  doi  abstract   bibtex   
2010 (1)
In vitro gene transfer by electrosonoporation. Escoffre, J.M, Kaddur, K, Rols, P, M, & Bouakaz, A. Ultrasound in medicine \& biology, 36(10):1746--55, October, 2010.
In vitro gene transfer by electrosonoporation. [link]Paper  doi  abstract   bibtex   
2009 (4)
A new learning paradigm: learning using privileged information. Vapnik, V. & Vashist, A. Neural Networks, 22(5-6):544--57, Elsevier Ltd, 2009.
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Platination of telomeric sequences and nuclease hypersensitive elements of human c-myc and PDGF-A promoters and their ability to form G-quadruplexes. Viglasky, V. The FEBS journal, 276(2):401–9, January, 2009.
Platination of telomeric sequences and nuclease hypersensitive elements of human c-myc and PDGF-A promoters and their ability to form G-quadruplexes. [link]Paper  doi  abstract   bibtex   
Effect of monovalent cations and G-quadruplex structures on the outcome of intramolecular homologous recombination. Barros, P., Boán, F., Blanco, M. G, & Gómez-Márquez, J. The FEBS journal, 276(11):2983–93, June, 2009. tex.city: Departamento de Bioqumica e Bioloxa Molecular, Facultade de Bioloxa-CIBUS, Universidade de Santiago de Compostela, Spain
Effect of monovalent cations and G-quadruplex structures on the outcome of intramolecular homologous recombination. [link]Paper  doi  abstract   bibtex   
Elevated polyamines induce c-MYC overexpression by perturbing quadruplex-WC duplex equilibrium. Kumar, N., Basundra, R., & Maiti, S. Nucleic acids research, 37(10):3321–31, June, 2009.
Elevated polyamines induce c-MYC overexpression by perturbing quadruplex-WC duplex equilibrium. [link]Paper  doi  abstract   bibtex   
2008 (3)
High heritability for a composite index of children's activity level measures. Wood, A. C, Rijsdijk, F., Saudino, K. J, Asherson, P., & Kuntsi, J. Behavior genetics, 38(3):266–76, May, 2008.
High heritability for a composite index of children's activity level measures. [link]Paper  doi  abstract   bibtex   
Classifier subset selection for biomedical named entity recognition. Dimililer, N., Varoğlu, E., & Altınçay, H. Applied Intelligence, 31(3):267-282, Springer, 2008.
Classifier subset selection for biomedical named entity recognition [link]Website  abstract   bibtex   
Phenotypic plasticity, costs of phenotypes, and costs of plasticity: toward an integrative view. Callahan, H. S, Maughan, H., & Steiner, U. K Annals of the New York Academy of Sciences, 1133:44--66, 2008.
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2007 (8)
ASTALAVISTA: dynamic and flexible analysis of alternative splicing events in custom gene datasets. Foissac, S. & Sammeth, M. Nucleic acids research, 35(Web Server issue):297, July, 2007.
ASTALAVISTA: dynamic and flexible analysis of alternative splicing events in custom gene datasets. [link]Paper  doi  abstract   bibtex   
Tackling community concerns about commercialisation and genetic research: a modest interdisciplinary proposal. Haddow, G., Laurie, G., Cunningham-Burley, S., & Hunter, K. G Social Science & Medicine (1982), 64(2):272--282, January, 2007.
Tackling community concerns about commercialisation and genetic research: a modest interdisciplinary proposal [link]Paper  doi  abstract   bibtex   
The highly cooperative folding of small naturally occurring proteins is likely the result of natural selection. Watters, A. L, Deka, P., Corrent, C., Callender, D., Varani, G., Sosnick, T., & Baker, D. Cell, 128(3):613--624, February, 2007.
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Joint inference of the distribution of fitness effects of deleterious mutations and population demography based on nucleotide polymorphism frequencies. Keightley, P. D. & Eyre-Walker, A. Genetics, 177(4):2251–2261, December, 2007.
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C/EBPbeta reprograms white 3T3-L1 preadipocytes to a Brown adipocyte pattern of gene expression. Karamanlidis, G., Karamitri, A., Docherty, K., Hazlerigg, D. G, & Lomax, M. a The Journal of biological chemistry, 282(34):24660–9, August, 2007.
C/EBPbeta reprograms white 3T3-L1 preadipocytes to a Brown adipocyte pattern of gene expression. [link]Paper  doi  bibtex   
Natural selection on female life-history traits in relation to socio-economic class in pre-industrial human populations. Pettay, J., E., Helle, S., Jokela, J., & Lummaa, V. PloS one, 2(7):e606, 1, 2007.
Natural selection on female life-history traits in relation to socio-economic class in pre-industrial human populations. [pdf]Paper  Natural selection on female life-history traits in relation to socio-economic class in pre-industrial human populations. [link]Website  abstract   bibtex   
Targeting neural circuitry in zebrafish using GAL4 enhancer trapping. Scott, E. K, Mason, L., Arrenberg, A. B, Ziv, L., Gosse, N. J, Xiao, T., Chi, N. C, Asakawa, K., Kawakami, K., & Baier, H. Nature methods, 4(4):323–6, April, 2007.
Targeting neural circuitry in zebrafish using GAL4 enhancer trapping. [link]Paper  doi  abstract   bibtex   
Functional genomics and proteomics of the cellular osmotic stress response in 'non-model' organisms. Kültz, D., Fiol, D., Valkova, N., Gomez-Jimenez, S., Chan, S., Y., & Lee, J. The Journal of experimental biology, 210(Pt 9):1593-601, 5, 2007.
Functional genomics and proteomics of the cellular osmotic stress response in 'non-model' organisms. [pdf]Paper  Functional genomics and proteomics of the cellular osmotic stress response in 'non-model' organisms. [link]Website  abstract   bibtex   
2006 (4)
Survey and analysis of microsatellites from transcript sequences in Phytophthora species: frequency, distribution, and potential as markers for the genus. Garnica, D., P., Pinzón, A., M., Quesada-Ocampo, L., M., Bernal, A., J., Barreto, E., Grünwald, N., J., & Restrepo, S. BMC genomics, 7:245, 1, 2006.
Survey and analysis of microsatellites from transcript sequences in Phytophthora species: frequency, distribution, and potential as markers for the genus. [pdf]Paper  Survey and analysis of microsatellites from transcript sequences in Phytophthora species: frequency, distribution, and potential as markers for the genus. [link]Website  abstract   bibtex   
All-trans retinoic acid down-regulates human albumin gene expression through the induction of C/EBPbeta-LIP. Masaki, T., Matsuura, T., Ohkawa, K., Miyamura, T., Okazaki, I., Watanabe, T., & Suzuki, T. The Biochemical journal, 397(2):345-53, 7, 2006.
All-trans retinoic acid down-regulates human albumin gene expression through the induction of C/EBPbeta-LIP. [pdf]Paper  All-trans retinoic acid down-regulates human albumin gene expression through the induction of C/EBPbeta-LIP. [link]Website  abstract   bibtex   
Essential role of Jun family transcription factors in PU.1 knockdown-induced leukemic stem cells. Steidl, U., Rosenbauer, F., Verhaak, R. G., Gu, X., Ebralidze, A., Otu, H. H., Klippel, S., Steidl, C., Bruns, I., Costa, D. B., Wagner, K., Aivado, M., Kobbe, G., Valk, P. J., Passegué, E., Libermann, T. A., Delwel, R., & Tenen, D. G. Nat Genet, 38(11):1269-77, 2006. Steidl, Ulrich Rosenbauer, Frank Verhaak, Roel G W Gu, Xuesong Ebralidze, Alexander Otu, Hasan H Klippel, Steffen Steidl, Christian Bruns, Ingmar Costa, Daniel B Wagner, Katharina Aivado, Manuel Kobbe, Guido Valk, Peter J M Passegué, Emmanuelle Libermann, Towia A Delwel, Ruud Tenen, Daniel G CA41456/CA/NCI NIH HHS/United States Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't United States 2006/10/17 Nat Genet. 2006 Nov;38(11):1269-77. doi: 10.1038/ng1898. Epub 2006 Oct 15.
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Genomic profiling identifies discrete deletions associated with translocations in glioblastoma multiforme. Mulholland, P. J., Fiegler, H., Mazzanti, C., Gorman, P., Sasieni, P., Adams, J., Jones, T. A., Babbage, J. W., Vatcheva, R., Ichimura, K., East, P., Poullikas, C., Collins, V. P., Carter, N. P., Tomlinson, I. P. M., & Sheer, D. Cell Cycle (Georgetown, Tex.), 5(7):783–791, April, 2006.
doi  abstract   bibtex   
2005 (4)
Biological evidence for inheritance of exceptional longevity. Atzmon, G., Rincon, M., Rabizadeh, P., & Barzilai, N. Mech Ageing Dev, 126(2):341-345, 2005.
Biological evidence for inheritance of exceptional longevity [pdf]Paper  Biological evidence for inheritance of exceptional longevity [link]Website  abstract   bibtex   
Polymorphisms of the DNA mismatch repair gene HMSH2 in breast cancer occurence and progression. Poplawski, T., Zadrozny, M., Kolacinska, A., Rykala, J., Morawiec, Z., & Blasiak, J. Breast Cancer Research and Treatment, 94(3):199–204, December, 2005.
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Formation and properties of hairpin and tetraplex structures of guanine-rich regulatory sequences of muscle-specific genes. Yafe, A., Etzioni, S., Weisman-Shomer, P., & Fry, M. Nucleic acids research, 33(9):2887–900, January, 2005.
Formation and properties of hairpin and tetraplex structures of guanine-rich regulatory sequences of muscle-specific genes. [link]Paper  doi  abstract   bibtex   
A comparison of linkage disequilibrium patterns and estimated population recombination rates across multiple populations. Evans, D., M. & Cardon, L., R. Am J Hum Genet, 76(4):681-687, 2005.
A comparison of linkage disequilibrium patterns and estimated population recombination rates across multiple populations [pdf]Paper  A comparison of linkage disequilibrium patterns and estimated population recombination rates across multiple populations [link]Website  abstract   bibtex   
2004 (5)
Regulation of FlbD activity by flagellum assembly is accomplished through direct interaction with the trans-acting factor, FliX. Muir, R. E & Gober, J. W Molecular Microbiology, 54(3):715--730, November, 2004.
Regulation of FlbD activity by flagellum assembly is accomplished through direct interaction with the trans-acting factor, FliX [link]Paper  doi  abstract   bibtex   
Over 20% of human transcripts might form sense-antisense pairs. Chen, J., Sun, M., Kent, W J., Huang, X., Xie, H., Wang, W., Zhou, G., Shi, R. Z., & Rowley, J. D Nucleic acids research, 32(16):4812--20, January, 2004.
Over 20% of human transcripts might form sense-antisense pairs. [link]Paper  doi  abstract   bibtex   
Animal behaviour: Coalition among male fiddler crabs. Backwell, P. R Y & Jennions, M. D Nature, 430(6998):417, 2004.
doi  abstract   bibtex   
Telomerase inhibition and cell growth arrest after telomestatin treatment in multiple myeloma. Shammas, M. a, Reis, R. J S., Li, C., Koley, H., Hurley, L. H, Anderson, K. C, & Munshi, N. C Clinical cancer research : an official journal of the American Association for Cancer Research, 10(2):770–6, January, 2004.
Telomerase inhibition and cell growth arrest after telomestatin treatment in multiple myeloma. [link]Paper  abstract   bibtex   
Neanderthals and the modern human colonization of Europe. Mellars, P. Nature, 432(7016):461-5, 2004.
doi  abstract   bibtex   
2003 (4)
Genetic factors in longevity. Blanche, H. Presse Med, 32(8):365-369, 2003.
Genetic factors in longevity [link]Website  abstract   bibtex   
Large-scale evidence that the cardiotoxicity of smoking is not significantly modified by the apolipoprotein E epsilon2/epsilon3/epsilon4 genotype. Keavney, B., Parish, S., Palmer, A., Clark, S., Youngman, L., Danesh, J., McKenzie, C., Delépine, M., Lathrop, M., Peto, R., & Collins, R. Lancet, 361(9355):396–8, February, 2003.
Large-scale evidence that the cardiotoxicity of smoking is not significantly modified by the apolipoprotein E epsilon2/epsilon3/epsilon4 genotype. [link]Paper  doi  bibtex   
Stability of intramolecular DNA quadruplexes: comparison with DNA duplexes. Risitano, A. & Fox, K. R Biochemistry, 42(21):6507–13, July, 2003.
Stability of intramolecular DNA quadruplexes: comparison with DNA duplexes. [link]Paper  doi  abstract   bibtex   
Vanillins–a novel family of DNA-PK inhibitors. Durant, S. & Karran, P. Nucleic Acids Research, 31(19):5501–5512, October, 2003.
abstract   bibtex   
2002 (9)
Prenatal diagnosis of zygosity by fetal DNA analysis, a contribution to the management of multiple pregnancies. A series of 31 cases. Levy, R., Mirlesse, V., Jacquemard, F., & Daffos, F. Fetal Diagnosis and Therapy, 17(6):339–342, December, 2002.
doi  bibtex   
Selective targeting of zebrafish olfactory receptor neurons by the endogenous OMP promoter. Celik, A., Fuss, S. H, & Korsching, S I The European journal of neuroscience, 15(5):798–806, March, 2002.
Selective targeting of zebrafish olfactory receptor neurons by the endogenous OMP promoter. [link]Paper  abstract   bibtex   
Variance components models for gene-environment interaction in twin analysis. Purcell, S. Twin research : the official journal of the International Society for Twin Studies, 5(6):554–71, December, 2002.
Variance components models for gene-environment interaction in twin analysis. [link]Paper  doi  abstract   bibtex   
Fine-scale mapping of disease loci via shattered coalescent modeling of genealogies. Morris, A., P., Whittaker, J., C., & Balding, D., J. Am J Hum Genet, 70(3):686-707., 2002.
Fine-scale mapping of disease loci via shattered coalescent modeling of genealogies [pdf]Paper  abstract   bibtex   
Y-chromosome analysis in Egypt suggests a genetic regional continuity in Northeastern Africa. Manni, F., Leonardi, P., Barakat, A., Rouba, H., Heyer, E., Klintschar, M., McElreavey, K., & Quintana-Murci, L. Human biology, 74(5):645-658, 10, 2002.
Y-chromosome analysis in Egypt suggests a genetic regional continuity in Northeastern Africa [pdf]Paper  Y-chromosome analysis in Egypt suggests a genetic regional continuity in Northeastern Africa [link]Website  abstract   bibtex   
Genomic analysis of uncultured marine viral communities. Breitbart, M., Salamon, P., Andresen, B., Mahaffy, J. M., Segall, A. M., Mead, D., Azam, F., & Rohwer, F. Proceedings of the National Academy of Sciences of the United States of America, 99(22):14250--14255, October, 2002.
doi  abstract   bibtex   
Human mutation--blame (mostly) men. Ellegren, H. Nat Genet, 31(1):9-10., 2002.
Human mutation--blame (mostly) men [pdf]Paper  bibtex   
Intrinsic and extrinsic contributions to stochasticity in gene expression. Swain, P., S., Elowitz, M., B., & Siggia, E., D. Proceedings of the National Academy of Sciences of the United States of America, 99(20):12795-12800, 2002.
Intrinsic and extrinsic contributions to stochasticity in gene expression. [pdf]Paper  abstract   bibtex   
Evolutionary and statistical properties of three genetic distances. Kalinowski, S., T. Mol Ecol, 11(8):1263-1273, 2002.
Evolutionary and statistical properties of three genetic distances [pdf]Paper  Evolutionary and statistical properties of three genetic distances [link]Website  abstract   bibtex   
2001 (6)
Genomewide scans of complex human diseases: true linkage is hard to find. Altmüller, J., Palmer, L., J., Fischer, G., Scherb, H., & Wjst, M. American journal of human genetics, 69(5):936-50, 11, 2001.
Genomewide scans of complex human diseases: true linkage is hard to find. [pdf]Paper  Genomewide scans of complex human diseases: true linkage is hard to find. [link]Website  abstract   bibtex   
After BRCA1 and BRCA2-what next? Multifactorial segregation analyses of three-generation, population-based Australian families affected by female breast cancer. Cui, J., Antoniou, A., C., Dite, G., S., Southey, M., C., Venter, D., J., Easton, D., F., Giles, G., G., McCredie, M., R., & Hopper, J., L. Am J Hum Genet, 68(2):420-31., 2001.
After BRCA1 and BRCA2-what next? Multifactorial segregation analyses of three-generation, population-based Australian families affected by female breast cancer [pdf]Paper  abstract   bibtex   
Replication studies in longevity: puzzling findings in Danish centenarians at the 3'APOB-VNTR locus. Varcasia, O., Garasto, S., Rizza, T., Andersen-Ranberg, K., Jeune, B., Bathum, L., Andreev, K., Tan, Q., Yashin, A., I., Bonafe, M., Franceschi, C., & De Benedictis, G. Ann Hum Genet, 65(Pt 4):371-376, 2001.
Replication studies in longevity: puzzling findings in Danish centenarians at the 3'APOB-VNTR locus [link]Website  abstract   bibtex   
Protecting Against Bad Air. Luzzatto, L. & Notaro, R. Science, 293(July):442-443, 2001.
Protecting Against Bad Air [pdf]Paper  bibtex   
Increase of homozygosity in centenarians revealed by a new inter-Alu PCR technique. Bonafe, M., Cardelli, M., Marchegiani, F., Cavallone, L., Giovagnetti, S., Olivieri, F., Lisa, R., Pieri, C., & Franceschi, C. Exp Gerontol, 36(7):1063-1073, 2001.
Increase of homozygosity in centenarians revealed by a new inter-Alu PCR technique [pdf]Paper  Increase of homozygosity in centenarians revealed by a new inter-Alu PCR technique [link]Website  abstract   bibtex   
A molecular beacon strategy for the thermodynamic characterization of triplex DNA: triplex formation at the promoter region of cyclin D1. Antony, T, Thomas, T, Sigal, L H, Shirahata, a, & Thomas, T J Biochemistry, 40(31):9387–95, August, 2001.
A molecular beacon strategy for the thermodynamic characterization of triplex DNA: triplex formation at the promoter region of cyclin D1. [link]Paper  abstract   bibtex   
2000 (4)
Expanding the structural and functional diversity of RNA: analog uridine triphosphates as candidates for in vitro selection of nucleic acids. Vaish, N K, Fraley, a W, Szostak, J W, & McLaughlin, L W Nucleic acids research, 28(17):3316–22, September, 2000.
Expanding the structural and functional diversity of RNA: analog uridine triphosphates as candidates for in vitro selection of nucleic acids. [link]Paper  abstract   bibtex   
Multivariate frailty model with a major gene: application to genealogical data. Begun, A., Desjardins, B., Iachine, I., & Yashin, A. Stud Health Technol Inform, 77:412-416, 2000.
Multivariate frailty model with a major gene: application to genealogical data [link]Website  abstract   bibtex   
Genetic and environmental influences on behavioral disinhibition. Young, S E, Stallings, M C, Corley, R P, Krauter, K S, & Hewitt, J K American journal of medical genetics, 96(5):684–95, October, 2000.
Genetic and environmental influences on behavioral disinhibition. [link]Paper  abstract   bibtex   
Why are the majority of hereditary cases of early-onset breast cancer sporadic? A simulation study. Cui, J. & Hopper, J., L. Cancer Epidemiol Biomarkers Prev, 9(8):805-12., 2000.
Why are the majority of hereditary cases of early-onset breast cancer sporadic? A simulation study [pdf]Paper  abstract   bibtex   
1999 (2)
Individuality and adaptation across levels of selection: how shall we name and generalize the unit of Darwinism?. Gould, S., J. & Lloyd, E., A. Proc Natl Acad Sci U S A, 96(21):11904-9., 1999.
Individuality and adaptation across levels of selection: how shall we name and generalize the unit of Darwinism? [pdf]Paper  abstract   bibtex   
Methylation of the BRCA1 promoter region in sporadic breast and ovarian cancer: correlation with disease characteristics. Catteau, A., Harris, W. H., Xu, C. F., & Solomon, E. Oncogene, 18(11):1957–1965, March, 1999.
doi  abstract   bibtex   
1998 (1)
How heritable is individual susceptibility to death? The results of an analysis of survival data on Danish, Swedish and Finnish twins. Iachine, I., A., Holm, N., V., Harris, J., R., Begun, A., Z., Iachina, M., K., Laitinen, M., Kaprio, J., & Yashin, A., I. Twin Res, 1(4):196-205, 1998.
How heritable is individual susceptibility to death? The results of an analysis of survival data on Danish, Swedish and Finnish twins [link]Website  abstract   bibtex   
1997 (1)
Allelic disequilibrium and allele frequency distribution as a function of social and demographic history. Thompson, E., A. & Neel, J., V. Am J Hum Genet, 60(1):197-204, 1997.
Allelic disequilibrium and allele frequency distribution as a function of social and demographic history [pdf]Paper  Allelic disequilibrium and allele frequency distribution as a function of social and demographic history [link]Website  abstract   bibtex   
1996 (3)
The genetical archaeology of the human genome. von Haeseler, A., Sajantila, A., & Paabo, S. Nat Genet, 14(2):135-140, 1996.
abstract   bibtex   
Analysis of Hox gene expression in the chick limb bud. Nelson, C., E., Morgan, B., a., Burke, a., C., Laufer, E., DiMambro, E., Murtaugh, L., C., Gonzales, E., Tessarollo, L., Parada, L., F., & Tabin, C. Development (Cambridge, England), 122(5):1449-66, 5, 1996.
Analysis of Hox gene expression in the chick limb bud. [pdf]Paper  Analysis of Hox gene expression in the chick limb bud. [link]Website  abstract   bibtex   
The Spo0A protein of Bacillus subtilis inhibits transcription of the abrB gene without preventing binding of the polymerase to the promoter. Greene, E A & Spiegelman, G B The Journal of Biological Chemistry, 271(19):11455--11461, May, 1996.
The Spo0A protein of Bacillus subtilis inhibits transcription of the abrB gene without preventing binding of the polymerase to the promoter [link]Paper  abstract   bibtex   
1995 (1)
Triplex DNA structures. Frank-Kamenetskii, M D & Mirkin, S M Annual review of biochemistry, 64:65–95, January, 1995. tex.ids= frank-kamenetskiiTriplexDNAStructure, frank-kamenetskiiTriplexDNAStructures, frank-kamenetskiiTriplexDNAStructuresa
Triplex DNA structures. [link]Paper  doi  abstract   bibtex   
1994 (2)
Variability and stability in cognitive abilities are largely genetic later in life. Plomin, R, Pedersen, N L, Lichtenstein, P, & McClearn, G E Behavior genetics, 24(3):207–15, May, 1994.
Variability and stability in cognitive abilities are largely genetic later in life. [link]Paper  abstract   bibtex   
Molecular genetics of sex determination. Wachtel, S. S Academic Press, San Diego, 1994.
bibtex   
1978 (1)
A model for the statistical fluctuations of protein numbers in a microbial population. Berg, O., G. Journal of theoretical biology, 71(4):587-603, 1978.
A model for the statistical fluctuations of protein numbers in a microbial population. [pdf]Paper  abstract   bibtex   
1976 (1)
Differentiation in the Caulobacter cell cycle. Shapiro, L Annual Review of Microbiology, 30:377--407, 1976.
Differentiation in the Caulobacter cell cycle [link]Paper  doi  bibtex   
1967 (1)
Enzymatic synthesis of DNA with 4-thio-thymidine triphosphate as substitute for dTTP. Lezius, a G & Scheit, K H European journal of biochemistry / FEBS, 3(1):85–94, December, 1967.
Enzymatic synthesis of DNA with 4-thio-thymidine triphosphate as substitute for dTTP. [link]Paper  bibtex